RNA–Protein interactions for RNA: ENST00000474475.1

TNFRSF9-202, Transcript of TNF receptor superfamily member 9, humanhuman

TSL 3

Gene TNFRSF9, Length 445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF9-202ENST00000474475 TEX13AQ9BXU3 409 aaPredicted RBP11.72□□□□□ -0.53
TNFRSF9-202ENST00000474475 TAOK2Q9UL54 1235 aa11.72□□□□□ -0.53
TNFRSF9-202ENST00000474475 DLEC1Q9Y238 1755 aa11.72□□□□□ -0.53
TNFRSF9-202ENST00000474475 A0A087WZG4 1122 aa11.71□□□□□ -0.53
TNFRSF9-202ENST00000474475 RGL2O15211 777 aa11.71□□□□□ -0.53
TNFRSF9-202ENST00000474475 A1BGP04217 495 aa11.71□□□□□ -0.53
TNFRSF9-202ENST00000474475 PYGBP11216 843 aa11.71□□□□□ -0.53
TNFRSF9-202ENST00000474475 DALRD3Q5D0E6 543 aaKnown RBP11.71□□□□□ -0.53
TNFRSF9-202ENST00000474475 CARMIL3Q8ND23 1372 aa11.7□□□□□ -0.54
TNFRSF9-202ENST00000474475 PRAMEF22A3QJZ6 481 aa11.7□□□□□ -0.54
TNFRSF9-202ENST00000474475 KIF3CO14782 793 aa11.7□□□□□ -0.54
TNFRSF9-202ENST00000474475 IL6STP40189 918 aaPredicted RBP11.7□□□□□ -0.54
TNFRSF9-202ENST00000474475 DCTN1Q14203 1278 aa11.7□□□□□ -0.54
TNFRSF9-202ENST00000474475 BICDL1Q6ZP65 573 aa11.7□□□□□ -0.54
TNFRSF9-202ENST00000474475 TBC1D2BQ9UPU7 963 aa11.7□□□□□ -0.54
TNFRSF9-202ENST00000474475 ZNF330Q9Y3S2 320 aaPredicted RBP11.7□□□□□ -0.54
TNFRSF9-202ENST00000474475 TBC1D9BQ66K14 1250 aa11.69□□□□□ -0.54
TNFRSF9-202ENST00000474475 RTF1Q92541 710 aaKnown RBP11.69□□□□□ -0.54
TNFRSF9-202ENST00000474475 USP16Q9Y5T5 823 aa11.69□□□□□ -0.54
TNFRSF9-202ENST00000474475 ANKRD31Q8N7Z5 1873 aa11.69□□□□□ -0.54
TNFRSF9-202ENST00000474475 BCORQ6W2J9 1755 aa11.69□□□□□ -0.54
TNFRSF9-202ENST00000474475 HTATSF1O43719 755 aaKnown RBP11.68□□□□□ -0.54
TNFRSF9-202ENST00000474475 PIP4K2AP48426 406 aaPredicted RBP11.68□□□□□ -0.54
TNFRSF9-202ENST00000474475 C9orf131Q5VYM1 1079 aa11.68□□□□□ -0.54
TNFRSF9-202ENST00000474475 DLG5Q8TDM6 1919 aa11.68□□□□□ -0.54
TNFRSF9-202ENST00000474475 CAMTA2O94983 1202 aa11.67□□□□□ -0.54
TNFRSF9-202ENST00000474475 C2CD5Q86YS7 1000 aa11.67□□□□□ -0.54
TNFRSF9-202ENST00000474475 COL11A2P13942 1736 aaPredicted RBP11.66□□□□□ -0.54
TNFRSF9-202ENST00000474475 SBF1O95248 1867 aa11.66□□□□□ -0.54
TNFRSF9-202ENST00000474475 C19orf67A6NJJ6 358 aa11.66□□□□□ -0.54
TNFRSF9-202ENST00000474475 RIOK3O14730 519 aaKnown RBP11.66□□□□□ -0.54
TNFRSF9-202ENST00000474475 SNRPA1P09661 255 aaKnown RBP11.66□□□□□ -0.54
TNFRSF9-202ENST00000474475 PRR5LQ6MZQ0 368 aa11.66□□□□□ -0.54
TNFRSF9-202ENST00000474475 DZIP3Q86Y13 1208 aaKnown RBP11.66□□□□□ -0.54
TNFRSF9-202ENST00000474475 CCDC24Q8N4L8 307 aa11.66□□□□□ -0.54
TNFRSF9-202ENST00000474475 PLEKHF1Q96S99 279 aa11.66□□□□□ -0.54
TNFRSF9-202ENST00000474475 NMRK2Q9NPI5 230 aa11.66□□□□□ -0.54
TNFRSF9-202ENST00000474475 KDM3BQ7LBC6 1761 aa11.66□□□□□ -0.54
TNFRSF9-202ENST00000474475 NBPF26B4DH59 902 aa11.65□□□□□ -0.54
TNFRSF9-202ENST00000474475 H0YIN7 160 aa11.65□□□□□ -0.54
TNFRSF9-202ENST00000474475 HSPA6P17066 643 aa11.65□□□□□ -0.54
TNFRSF9-202ENST00000474475 TAF7Q15545 349 aaPredicted RBP11.65□□□□□ -0.54
TNFRSF9-202ENST00000474475 NBPF10Q6P3W6 841 aaKnown RBP11.65□□□□□ -0.54
TNFRSF9-202ENST00000474475 NBPF15Q8N660 670 aa11.65□□□□□ -0.54
TNFRSF9-202ENST00000474475 TTLL6Q8N841 843 aa11.65□□□□□ -0.54
TNFRSF9-202ENST00000474475 MIS18AQ9NYP9 233 aa11.65□□□□□ -0.54
TNFRSF9-202ENST00000474475 RNF181Q9P0P0 153 aa11.65□□□□□ -0.54
TNFRSF9-202ENST00000474475 LAMB4A4D0S4 1761 aa11.64□□□□□ -0.55
TNFRSF9-202ENST00000474475 HAX1O00165 279 aa11.64□□□□□ -0.55
TNFRSF9-202ENST00000474475 PRELPP51888 382 aa11.64□□□□□ -0.55
TNFRSF9-202ENST00000474475 RASSF7Q02833 373 aa11.64□□□□□ -0.55
TNFRSF9-202ENST00000474475 NPM2Q86SE8 214 aaKnown RBP11.64□□□□□ -0.55
TNFRSF9-202ENST00000474475 BRIP1Q9BX63 1249 aa11.64□□□□□ -0.55
TNFRSF9-202ENST00000474475 CEP350Q5VT06 3117 aa11.63□□□□□ -0.55
TNFRSF9-202ENST00000474475 NEFMP07197 916 aa11.63□□□□□ -0.55
TNFRSF9-202ENST00000474475 PDE6BP35913 854 aa11.63□□□□□ -0.55
TNFRSF9-202ENST00000474475 NFE2L2Q16236 605 aa11.63□□□□□ -0.55
TNFRSF9-202ENST00000474475 SETDB2Q96T68 719 aa11.63□□□□□ -0.55
TNFRSF9-202ENST00000474475 THUMPD2Q9BTF0 503 aaKnown RBP11.63□□□□□ -0.55
TNFRSF9-202ENST00000474475 NFKBIEO00221 500 aa11.62□□□□□ -0.55
TNFRSF9-202ENST00000474475 TOMM70O94826 608 aa11.62□□□□□ -0.55
TNFRSF9-202ENST00000474475 ZNF467Q7Z7K2 595 aaPredicted RBP11.62□□□□□ -0.55
TNFRSF9-202ENST00000474475 CNBD1Q8NA66 436 aa11.62□□□□□ -0.55
TNFRSF9-202ENST00000474475 ZNF622Q969S3 477 aaKnown RBP eCLIP11.62□□□□□ -0.55
TNFRSF9-202ENST00000474475 TIAM2Q8IVF5 1701 aa11.61□□□□□ -0.55
TNFRSF9-202ENST00000474475 CLEC4GQ6UXB4 293 aa11.61□□□□□ -0.55
TNFRSF9-202ENST00000474475 PNISRQ8TF01 805 aaKnown RBP11.61□□□□□ -0.55
TNFRSF9-202ENST00000474475 PDZRN3Q9UPQ7 1066 aa11.61□□□□□ -0.55
TNFRSF9-202ENST00000474475 TNRC6CQ9HCJ0 1690 aaKnown RBP11.61□□□□□ -0.55
TNFRSF9-202ENST00000474475 KDM2BQ8NHM5 1336 aa11.6□□□□□ -0.55
TNFRSF9-202ENST00000474475 MAPK8IP3Q9UPT6 1336 aa11.6□□□□□ -0.55
TNFRSF9-202ENST00000474475 CACNA1SQ13698 1873 aa11.6□□□□□ -0.55
TNFRSF9-202ENST00000474475 CCDC88AQ3V6T2 1871 aa11.6□□□□□ -0.55
TNFRSF9-202ENST00000474475 ARFGEF2Q9Y6D5 1785 aa11.6□□□□□ -0.55
TNFRSF9-202ENST00000474475 C21orf2O43822 256 aa11.6□□□□□ -0.55
TNFRSF9-202ENST00000474475 LMNB1P20700 586 aa11.6□□□□□ -0.55
TNFRSF9-202ENST00000474475 EIF4A1P60842 406 aaKnown RBP11.6□□□□□ -0.55
TNFRSF9-202ENST00000474475 ST5P78524 1137 aa11.6□□□□□ -0.55
TNFRSF9-202ENST00000474475 DDX10Q13206 875 aaKnown RBP11.6□□□□□ -0.55
TNFRSF9-202ENST00000474475 RALBP1Q15311 655 aa11.6□□□□□ -0.55
TNFRSF9-202ENST00000474475 ZNF652Q9Y2D9 606 aa11.6□□□□□ -0.55
TNFRSF9-202ENST00000474475 ZC3H4Q9UPT8 1303 aaKnown RBP11.6□□□□□ -0.55
TNFRSF9-202ENST00000474475 FER1L6Q2WGJ9 1857 aa11.59□□□□□ -0.55
TNFRSF9-202ENST00000474475 SLX4Q8IY92 1834 aa11.59□□□□□ -0.55
TNFRSF9-202ENST00000474475 NPHP1O15259 732 aa11.59□□□□□ -0.55
TNFRSF9-202ENST00000474475 SRGNP10124 158 aa11.59□□□□□ -0.55
TNFRSF9-202ENST00000474475 HLFQ16534 295 aa11.59□□□□□ -0.55
TNFRSF9-202ENST00000474475 STYK1Q6J9G0 422 aa11.59□□□□□ -0.55
TNFRSF9-202ENST00000474475 NBPF5PQ86XG9 351 aaPredicted RBP11.59□□□□□ -0.55
TNFRSF9-202ENST00000474475 RNF25Q96BH1 459 aaPredicted RBP11.59□□□□□ -0.55
TNFRSF9-202ENST00000474475 PNNQ9H307 717 aaKnown RBP11.59□□□□□ -0.55
TNFRSF9-202ENST00000474475 RRAGCQ9HB90 399 aa11.59□□□□□ -0.55
TNFRSF9-202ENST00000474475 RBM46Q8TBY0 533 aaKnown RBP11.58□□□□□ -0.56
TNFRSF9-202ENST00000474475 CNKSR1Q969H4 720 aa11.58□□□□□ -0.56
TNFRSF9-202ENST00000474475 MASTLQ96GX5 879 aa11.58□□□□□ -0.56
TNFRSF9-202ENST00000474475 NIP7Q9Y221 180 aaKnown RBP eCLIP11.58□□□□□ -0.56
TNFRSF9-202ENST00000474475 FAM177BA6PVY3 158 aa11.57□□□□□ -0.56
TNFRSF9-202ENST00000474475 RIPK4P57078 832 aa11.57□□□□□ -0.56
TNFRSF9-202ENST00000474475 PRPF40BQ6NWY9 871 aaKnown RBP11.57□□□□□ -0.56
TNFRSF9-202ENST00000474475 TPTE2Q6XPS3 522 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms