RNA–Protein interactions for RNA: ENST00000473602.1

SHROOM3-204, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 789 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-204ENST00000473602 ERFEQ4G0M1 354 aa17.06■□□□□ 0.32
SHROOM3-204ENST00000473602 CCDC24Q8N4L8 307 aa17.06■□□□□ 0.32
SHROOM3-204ENST00000473602 KCNQ3O43525 872 aa17.05■□□□□ 0.32
SHROOM3-204ENST00000473602 TMPOP42166 694 aaKnown RBP17.05■□□□□ 0.32
SHROOM3-204ENST00000473602 TBC1D9BQ66K14 1250 aa17.05■□□□□ 0.32
SHROOM3-204ENST00000473602 RUNDC1Q96C34 613 aa17.05■□□□□ 0.32
SHROOM3-204ENST00000473602 BRIP1Q9BX63 1249 aa17.05■□□□□ 0.32
SHROOM3-204ENST00000473602 SCN7AQ01118 1682 aa17.04■□□□□ 0.32
SHROOM3-204ENST00000473602 A0A087WZG4 1122 aa17.04■□□□□ 0.32
SHROOM3-204ENST00000473602 SNRPA1P09661 255 aaKnown RBP17.04■□□□□ 0.32
SHROOM3-204ENST00000473602 PDE6BP35913 854 aa17.04■□□□□ 0.32
SHROOM3-204ENST00000473602 RIPK4P57078 832 aa17.04■□□□□ 0.32
SHROOM3-204ENST00000473602 IL6STP40189 918 aaPredicted RBP17.03■□□□□ 0.32
SHROOM3-204ENST00000473602 CHADLQ6NUI6 762 aa17.03■□□□□ 0.32
SHROOM3-204ENST00000473602 MKRN1Q9UHC7 482 aaKnown RBP17.03■□□□□ 0.32
SHROOM3-204ENST00000473602 ADAMTS8Q9UP79 889 aa17.03■□□□□ 0.32
SHROOM3-204ENST00000473602 PDZRN3Q9UPQ7 1066 aa17.03■□□□□ 0.32
SHROOM3-204ENST00000473602 TBC1D2BQ9UPU7 963 aa17.03■□□□□ 0.32
SHROOM3-204ENST00000473602 AFDNP55196 1824 aaKnown RBP17.03■□□□□ 0.32
SHROOM3-204ENST00000473602 DDNO94850 711 aaPredicted RBP17.02■□□□□ 0.32
SHROOM3-204ENST00000473602 PRR5LQ6MZQ0 368 aa17.02■□□□□ 0.32
SHROOM3-204ENST00000473602 CREBZFQ9NS37 354 aa17.02■□□□□ 0.32
SHROOM3-204ENST00000473602 ZNF330Q9Y3S2 320 aaPredicted RBP17.02■□□□□ 0.32
SHROOM3-204ENST00000473602 NRXN2Q9P2S2 1712 aa17.01■□□□□ 0.31
SHROOM3-204ENST00000473602 POTEIP0CG38 1075 aa17.01■□□□□ 0.31
SHROOM3-204ENST00000473602 POTEJP0CG39 1038 aa17.01■□□□□ 0.31
SHROOM3-204ENST00000473602 CCDC146Q8IYE0 955 aa17.01■□□□□ 0.31
SHROOM3-204ENST00000473602 THUMPD2Q9BTF0 503 aaKnown RBP17.01■□□□□ 0.31
SHROOM3-204ENST00000473602 TAOK3Q9H2K8 898 aa17.01■□□□□ 0.31
SHROOM3-204ENST00000473602 BABAM1Q9NWV8 329 aa17.01■□□□□ 0.31
SHROOM3-204ENST00000473602 BCORQ6W2J9 1755 aa17.01■□□□□ 0.31
SHROOM3-204ENST00000473602 ANP32CO43423 234 aa17■□□□□ 0.31
SHROOM3-204ENST00000473602 NPM2Q86SE8 214 aaKnown RBP17■□□□□ 0.31
SHROOM3-204ENST00000473602 USP16Q9Y5T5 823 aa17■□□□□ 0.31
SHROOM3-204ENST00000473602 CNKSR1Q969H4 720 aa16.99■□□□□ 0.31
SHROOM3-204ENST00000473602 SETDB2Q96T68 719 aa16.99■□□□□ 0.31
SHROOM3-204ENST00000473602 MIS18AQ9NYP9 233 aa16.99■□□□□ 0.31
SHROOM3-204ENST00000473602 LTBP3Q9NS15 1303 aa16.98■□□□□ 0.31
SHROOM3-204ENST00000473602 NPHP1O15259 732 aa16.98■□□□□ 0.31
SHROOM3-204ENST00000473602 A1BGP04217 495 aa16.98■□□□□ 0.31
SHROOM3-204ENST00000473602 PRAMEF22A3QJZ6 481 aa16.97■□□□□ 0.31
SHROOM3-204ENST00000473602 EIF4A1P60842 406 aaKnown RBP16.97■□□□□ 0.31
SHROOM3-204ENST00000473602 STYK1Q6J9G0 422 aa16.97■□□□□ 0.31
SHROOM3-204ENST00000473602 PRPF40BQ6NWY9 871 aaKnown RBP16.97■□□□□ 0.31
SHROOM3-204ENST00000473602 CNBD1Q8NA66 436 aa16.97■□□□□ 0.31
SHROOM3-204ENST00000473602 TSPYL4Q9UJ04 414 aa16.97■□□□□ 0.31
SHROOM3-204ENST00000473602 RRP7AQ9Y3A4 280 aaKnown RBP16.97■□□□□ 0.31
SHROOM3-204ENST00000473602 FOXN1O15353 648 aa16.96■□□□□ 0.31
SHROOM3-204ENST00000473602 CAMTA2O94983 1202 aa16.96■□□□□ 0.31
SHROOM3-204ENST00000473602 SRGNP10124 158 aa16.96■□□□□ 0.31
SHROOM3-204ENST00000473602 NEUROD2Q15784 382 aa16.96■□□□□ 0.31
SHROOM3-204ENST00000473602 DLEC1Q9Y238 1755 aa16.96■□□□□ 0.31
SHROOM3-204ENST00000473602 RGL2O15211 777 aa16.95■□□□□ 0.3
SHROOM3-204ENST00000473602 ST5P78524 1137 aa16.95■□□□□ 0.3
SHROOM3-204ENST00000473602 SOGA3Q5TF21 947 aa16.95■□□□□ 0.3
SHROOM3-204ENST00000473602 MASTLQ96GX5 879 aa16.95■□□□□ 0.3
SHROOM3-204ENST00000473602 TRIM35Q9UPQ4 493 aa16.95■□□□□ 0.3
SHROOM3-204ENST00000473602 TIAM2Q8IVF5 1701 aa16.95■□□□□ 0.3
SHROOM3-204ENST00000473602 CCDC88AQ3V6T2 1871 aa16.95■□□□□ 0.3
SHROOM3-204ENST00000473602 CNTNAP1P78357 1384 aa16.94■□□□□ 0.3
SHROOM3-204ENST00000473602 IQCA1LA6NCM1 817 aa16.94■□□□□ 0.3
SHROOM3-204ENST00000473602 LDHDQ86WU2 507 aa16.94■□□□□ 0.3
SHROOM3-204ENST00000473602 DZIP3Q86Y13 1208 aaKnown RBP16.94■□□□□ 0.3
SHROOM3-204ENST00000473602 TAF1DQ9H5J8 278 aaPredicted RBP16.94■□□□□ 0.3
SHROOM3-204ENST00000473602 C7orf43Q8WVR3 580 aa16.93■□□□□ 0.3
SHROOM3-204ENST00000473602 ERBB4Q15303 1308 aa16.93■□□□□ 0.3
SHROOM3-204ENST00000473602 PASKQ96RG2 1323 aa16.93■□□□□ 0.3
SHROOM3-204ENST00000473602 NBPF26B4DH59 902 aa16.92■□□□□ 0.3
SHROOM3-204ENST00000473602 CHL1O00533 1208 aa16.92■□□□□ 0.3
SHROOM3-204ENST00000473602 VEGFBP49765 207 aa16.92■□□□□ 0.3
SHROOM3-204ENST00000473602 CCDC184Q52MB2 194 aa16.92■□□□□ 0.3
SHROOM3-204ENST00000473602 NBPF10Q6P3W6 841 aaKnown RBP16.92■□□□□ 0.3
SHROOM3-204ENST00000473602 NBPF15Q8N660 670 aa16.92■□□□□ 0.3
SHROOM3-204ENST00000473602 L3MBTL3Q96JM7 780 aaPredicted RBP16.92■□□□□ 0.3
SHROOM3-204ENST00000473602 MRS2Q9HD23 443 aa16.92■□□□□ 0.3
SHROOM3-204ENST00000473602 PRDM10Q9NQV6 1147 aa16.92■□□□□ 0.3
SHROOM3-204ENST00000473602 ANKRD31Q8N7Z5 1873 aa16.91■□□□□ 0.3
SHROOM3-204ENST00000473602 TMEM88BA6NKF7 163 aa16.91■□□□□ 0.3
SHROOM3-204ENST00000473602 APAF1O14727 1248 aa16.91■□□□□ 0.3
SHROOM3-204ENST00000473602 ITGBL1O95965 494 aaPredicted RBP16.91■□□□□ 0.3
SHROOM3-204ENST00000473602 PIP4K2AP48426 406 aaPredicted RBP16.91■□□□□ 0.3
SHROOM3-204ENST00000473602 CALD1Q05682 793 aaKnown RBP16.91■□□□□ 0.3
SHROOM3-204ENST00000473602 EAPPQ56P03 285 aaPredicted RBP16.91■□□□□ 0.3
SHROOM3-204ENST00000473602 CLEC4GQ6UXB4 293 aa16.91■□□□□ 0.3
SHROOM3-204ENST00000473602 AIDAQ96BJ3 306 aa16.91■□□□□ 0.3
SHROOM3-204ENST00000473602 ZNF652Q9Y2D9 606 aa16.91■□□□□ 0.3
SHROOM3-204ENST00000473602 CTCFP49711 727 aaPredicted RBP16.9■□□□□ 0.3
SHROOM3-204ENST00000473602 CCDC93Q567U6 631 aa16.9■□□□□ 0.3
SHROOM3-204ENST00000473602 NBPF5PQ86XG9 351 aaPredicted RBP16.9■□□□□ 0.3
SHROOM3-204ENST00000473602 ZNF277Q9NRM2 450 aaPredicted RBP16.9■□□□□ 0.3
SHROOM3-204ENST00000473602 FER1L6Q2WGJ9 1857 aa16.9■□□□□ 0.3
SHROOM3-204ENST00000473602 NPR1P16066 1061 aa16.89■□□□□ 0.29
SHROOM3-204ENST00000473602 CFAP44Q96MT7 982 aa16.89■□□□□ 0.29
SHROOM3-204ENST00000473602 CLEC11AQ9Y240 323 aa16.89■□□□□ 0.29
SHROOM3-204ENST00000473602 NUP98P52948 1817 aa16.89■□□□□ 0.29
SHROOM3-204ENST00000473602 SLX4Q8IY92 1834 aa16.89■□□□□ 0.29
SHROOM3-204ENST00000473602 COL11A2P13942 1736 aaPredicted RBP16.88■□□□□ 0.29
SHROOM3-204ENST00000473602 FKBP4Q02790 459 aaKnown RBP eCLIP16.88■□□□□ 0.29
SHROOM3-204ENST00000473602 OLFM4Q6UX06 510 aa16.88■□□□□ 0.29
SHROOM3-204ENST00000473602 WBP1LQ9NX94 342 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms