RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 SLX4Q8IY92 1834 aa27.99■■■□□ 2.07
COL9A3-207ENST00000467819 ST5P78524 1137 aa27.99■■■□□ 2.07
COL9A3-207ENST00000467819 C21orf2O43822 256 aa27.98■■■□□ 2.07
COL9A3-207ENST00000467819 NEFMP07197 916 aa27.98■■■□□ 2.07
COL9A3-207ENST00000467819 TAF7Q15545 349 aaPredicted RBP27.98■■■□□ 2.07
COL9A3-207ENST00000467819 MIS18AQ9NYP9 233 aa27.97■■■□□ 2.07
COL9A3-207ENST00000467819 ZNF652Q9Y2D9 606 aa27.96■■■□□ 2.07
COL9A3-207ENST00000467819 NBPF26B4DH59 902 aa27.95■■■□□ 2.06
COL9A3-207ENST00000467819 NBPF10Q6P3W6 841 aaKnown RBP27.95■■■□□ 2.06
COL9A3-207ENST00000467819 NBPF15Q8N660 670 aa27.95■■■□□ 2.06
COL9A3-207ENST00000467819 FSTL1Q12841 308 aa27.94■■■□□ 2.06
COL9A3-207ENST00000467819 CLEC4GQ6UXB4 293 aa27.94■■■□□ 2.06
COL9A3-207ENST00000467819 NBPF5PQ86XG9 351 aaPredicted RBP27.94■■■□□ 2.06
COL9A3-207ENST00000467819 GLTPD2A6NH11 291 aa27.93■■■□□ 2.06
COL9A3-207ENST00000467819 SRGNP10124 158 aa27.92■■■□□ 2.06
COL9A3-207ENST00000467819 STYK1Q6J9G0 422 aa27.92■■■□□ 2.06
COL9A3-207ENST00000467819 CNKSR1Q969H4 720 aa27.92■■■□□ 2.06
COL9A3-207ENST00000467819 PRPF40BQ6NWY9 871 aaKnown RBP27.91■■■□□ 2.06
COL9A3-207ENST00000467819 PLEKHF1Q96S99 279 aa27.91■■■□□ 2.06
COL9A3-207ENST00000467819 NUP98P52948 1817 aa27.9■■■□□ 2.06
COL9A3-207ENST00000467819 HTRA3P83110 453 aa27.9■■■□□ 2.06
COL9A3-207ENST00000467819 DNAJC5GQ8N7S2 189 aa27.9■■■□□ 2.06
COL9A3-207ENST00000467819 MASTLQ96GX5 879 aa27.9■■■□□ 2.06
COL9A3-207ENST00000467819 NIP7Q9Y221 180 aaKnown RBP eCLIP27.9■■■□□ 2.06
COL9A3-207ENST00000467819 FAM177BA6PVY3 158 aa27.89■■■□□ 2.06
COL9A3-207ENST00000467819 NFE2L2Q16236 605 aa27.89■■■□□ 2.06
COL9A3-207ENST00000467819 THUMPD2Q9BTF0 503 aaKnown RBP27.89■■■□□ 2.06
COL9A3-207ENST00000467819 VEGFAP15692 232 aaPredicted RBP27.88■■■□□ 2.05
COL9A3-207ENST00000467819 PNISRQ8TF01 805 aaKnown RBP27.88■■■□□ 2.05
COL9A3-207ENST00000467819 MAPK8IP3Q9UPT6 1336 aa27.88■■■□□ 2.05
COL9A3-207ENST00000467819 ERFEQ4G0M1 354 aa27.87■■■□□ 2.05
COL9A3-207ENST00000467819 NGEFQ8N5V2 710 aa27.87■■■□□ 2.05
COL9A3-207ENST00000467819 SMC1BQ8NDV3 1235 aa27.87■■■□□ 2.05
COL9A3-207ENST00000467819 TAOK3Q9H2K8 898 aa27.87■■■□□ 2.05
COL9A3-207ENST00000467819 HLFQ16534 295 aa27.86■■■□□ 2.05
COL9A3-207ENST00000467819 LTBP3Q9NS15 1303 aa27.86■■■□□ 2.05
COL9A3-207ENST00000467819 TPTE2Q6XPS3 522 aa27.85■■■□□ 2.05
COL9A3-207ENST00000467819 RGL2O15211 777 aa27.84■■■□□ 2.05
COL9A3-207ENST00000467819 EIF4A1P60842 406 aaKnown RBP27.84■■■□□ 2.05
COL9A3-207ENST00000467819 DPY19L2Q6NUT2 758 aa27.84■■■□□ 2.05
COL9A3-207ENST00000467819 PNNQ9H307 717 aaKnown RBP27.84■■■□□ 2.05
COL9A3-207ENST00000467819 NPR1P16066 1061 aa27.83■■■□□ 2.05
COL9A3-207ENST00000467819 SOGA3Q5TF21 947 aa27.83■■■□□ 2.05
COL9A3-207ENST00000467819 RRP7AQ9Y3A4 280 aaKnown RBP27.83■■■□□ 2.05
COL9A3-207ENST00000467819 IFFO2Q5TF58 517 aa27.82■■■□□ 2.04
COL9A3-207ENST00000467819 POTECB2RU33 542 aa27.8■■■□□ 2.04
COL9A3-207ENST00000467819 MYL6BP14649 208 aa27.8■■■□□ 2.04
COL9A3-207ENST00000467819 GTF2E1P29083 439 aaPredicted RBP27.8■■■□□ 2.04
COL9A3-207ENST00000467819 KLRG2A4D1S0 409 aaPredicted RBP27.79■■■□□ 2.04
COL9A3-207ENST00000467819 CCDC93Q567U6 631 aa27.79■■■□□ 2.04
COL9A3-207ENST00000467819 KLRG1Q96E93 195 aa27.79■■■□□ 2.04
COL9A3-207ENST00000467819 MAP3K15Q6ZN16 1313 aa27.78■■■□□ 2.04
COL9A3-207ENST00000467819 KIF6Q6ZMV9 814 aa27.78■■■□□ 2.04
COL9A3-207ENST00000467819 TTLL7Q6ZT98 887 aa27.78■■■□□ 2.04
COL9A3-207ENST00000467819 C7orf43Q8WVR3 580 aa27.78■■■□□ 2.04
COL9A3-207ENST00000467819 ABCC12Q96J65 1359 aa27.76■■■□□ 2.03
COL9A3-207ENST00000467819 ERVV-1B6SEH8 477 aa27.76■■■□□ 2.03
COL9A3-207ENST00000467819 OLFM4Q6UX06 510 aa27.76■■■□□ 2.03
COL9A3-207ENST00000467819 NUTM1Q86Y26 1132 aa27.76■■■□□ 2.03
COL9A3-207ENST00000467819 TSPYL4Q9UJ04 414 aa27.76■■■□□ 2.03
COL9A3-207ENST00000467819 DDNO94850 711 aaPredicted RBP27.75■■■□□ 2.03
COL9A3-207ENST00000467819 RALBP1Q15311 655 aa27.75■■■□□ 2.03
COL9A3-207ENST00000467819 NYXQ9GZU5 481 aa27.75■■■□□ 2.03
COL9A3-207ENST00000467819 ZBTB3Q9H5J0 574 aa27.75■■■□□ 2.03
COL9A3-207ENST00000467819 GPTP24298 496 aa27.74■■■□□ 2.03
COL9A3-207ENST00000467819 RIPK4P57078 832 aa27.74■■■□□ 2.03
COL9A3-207ENST00000467819 FKBP4Q02790 459 aaKnown RBP eCLIP27.73■■■□□ 2.03
COL9A3-207ENST00000467819 ZNF277Q9NRM2 450 aaPredicted RBP27.73■■■□□ 2.03
COL9A3-207ENST00000467819 ALDH1B1P30837 517 aa27.72■■■□□ 2.03
COL9A3-207ENST00000467819 SCN4AP35499 1836 aa27.71■■■□□ 2.03
COL9A3-207ENST00000467819 PCNTO95613 3336 aa27.7■■■□□ 2.03
COL9A3-207ENST00000467819 ERBB4Q15303 1308 aa27.7■■■□□ 2.03
COL9A3-207ENST00000467819 UBN2Q6ZU65 1347 aa27.7■■■□□ 2.03
COL9A3-207ENST00000467819 DDX10Q13206 875 aaKnown RBP27.7■■■□□ 2.02
COL9A3-207ENST00000467819 JMYQ8N9B5 988 aa27.7■■■□□ 2.02
COL9A3-207ENST00000467819 EIF2S2P20042 333 aaKnown RBP27.69■■■□□ 2.02
COL9A3-207ENST00000467819 RTKN2Q8IZC4 609 aa27.69■■■□□ 2.02
COL9A3-207ENST00000467819 TMPOP42166 694 aaKnown RBP27.68■■■□□ 2.02
COL9A3-207ENST00000467819 CRY2Q49AN0 593 aa27.68■■■□□ 2.02
COL9A3-207ENST00000467819 SUSD4Q5VX71 490 aa27.68■■■□□ 2.02
COL9A3-207ENST00000467819 IBTKQ9P2D0 1353 aaPredicted RBP27.68■■■□□ 2.02
COL9A3-207ENST00000467819 POTEIP0CG38 1075 aa27.67■■■□□ 2.02
COL9A3-207ENST00000467819 POTEJP0CG39 1038 aa27.67■■■□□ 2.02
COL9A3-207ENST00000467819 GIGYF2Q6Y7W6 1299 aaKnown RBP27.67■■■□□ 2.02
COL9A3-207ENST00000467819 ANKRD36CQ5JPF3 1778 aa27.67■■■□□ 2.02
COL9A3-207ENST00000467819 MYBBP1AQ9BQG0 1328 aaKnown RBP27.67■■■□□ 2.02
COL9A3-207ENST00000467819 LMOD3Q0VAK6 560 aa27.66■■■□□ 2.02
COL9A3-207ENST00000467819 CCDC146Q8IYE0 955 aa27.66■■■□□ 2.02
COL9A3-207ENST00000467819 RPGRQ92834 1020 aaKnown RBP27.66■■■□□ 2.02
COL9A3-207ENST00000467819 RIC1Q4ADV7 1423 aa27.66■■■□□ 2.02
COL9A3-207ENST00000467819 ZNF541Q9H0D2 1346 aa27.66■■■□□ 2.02
COL9A3-207ENST00000467819 ANXA1P04083 346 aa27.65■■■□□ 2.02
COL9A3-207ENST00000467819 NEUROD2Q15784 382 aa27.65■■■□□ 2.02
COL9A3-207ENST00000467819 CHADLQ6NUI6 762 aa27.65■■■□□ 2.02
COL9A3-207ENST00000467819 ZNF34Q8IZ26 560 aa27.65■■■□□ 2.02
COL9A3-207ENST00000467819 SYNE4Q8N205 404 aa27.65■■■□□ 2.02
COL9A3-207ENST00000467819 NTSR2O95665 410 aa27.64■■■□□ 2.02
COL9A3-207ENST00000467819 IARSP41252 1262 aaKnown RBP27.64■■■□□ 2.02
COL9A3-207ENST00000467819 PDIA6Q15084 440 aa27.64■■■□□ 2.02
COL9A3-207ENST00000467819 SNED1Q8TER0 1413 aa27.64■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms