RNA–Protein interactions for RNA: ENST00000466222.6

CAPN3-209, Transcript of calpain 3, humanhuman

TSL 2

Gene CAPN3, Length 1,934 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-209ENST00000466222 SMIM5Q71RC9 77 aa23.35■■□□□ 1.33
CAPN3-209ENST00000466222 IGKV5-2P06315 115 aa23.34■■□□□ 1.33
CAPN3-209ENST00000466222 USP44Q9H0E7 712 aa23.34■■□□□ 1.33
CAPN3-209ENST00000466222 RTL5Q5HYW3 569 aaPredicted RBP23.33■■□□□ 1.33
CAPN3-209ENST00000466222 MYD88Q99836 296 aa23.33■■□□□ 1.33
CAPN3-209ENST00000466222 AAMPQ13685 434 aa23.33■■□□□ 1.32
CAPN3-209ENST00000466222 SKAP1Q86WV1 359 aa23.33■■□□□ 1.32
CAPN3-209ENST00000466222 CCDC87Q9NVE4 849 aa23.33■■□□□ 1.32
CAPN3-209ENST00000466222 ATP5J2-PTCD1G3V325 749 aa23.32■■□□□ 1.32
CAPN3-209ENST00000466222 PLBD2Q8NHP8 589 aa23.32■■□□□ 1.32
CAPN3-209ENST00000466222 CCNL1Q9UK58 526 aaPredicted RBP23.32■■□□□ 1.32
CAPN3-209ENST00000466222 NBPF7P0C2Y1 421 aaPredicted RBP23.31■■□□□ 1.32
CAPN3-209ENST00000466222 SIRT2Q8IXJ6 389 aa23.31■■□□□ 1.32
CAPN3-209ENST00000466222 METTL22Q9BUU2 404 aaPredicted RBP23.31■■□□□ 1.32
CAPN3-209ENST00000466222 FAM161AQ3B820 660 aa23.31■■□□□ 1.32
CAPN3-209ENST00000466222 LRRC4BQ9NT99 713 aa23.31■■□□□ 1.32
CAPN3-209ENST00000466222 BRWD3Q6RI45 1802 aa23.3■■□□□ 1.32
CAPN3-209ENST00000466222 TBC1D2BQ9UPU7 963 aa23.3■■□□□ 1.32
CAPN3-209ENST00000466222 NHSQ6T4R5 1651 aa23.3■■□□□ 1.32
CAPN3-209ENST00000466222 NBR1Q14596 966 aa23.29■■□□□ 1.32
CAPN3-209ENST00000466222 LINS1Q8NG48 757 aa23.29■■□□□ 1.32
CAPN3-209ENST00000466222 LAMB4A4D0S4 1761 aa23.29■■□□□ 1.32
CAPN3-209ENST00000466222 DEKP35659 375 aaKnown RBP23.29■■□□□ 1.32
CAPN3-209ENST00000466222 JARID2Q92833 1246 aaPredicted RBP23.29■■□□□ 1.32
CAPN3-209ENST00000466222 IL6STP40189 918 aaPredicted RBP23.28■■□□□ 1.32
CAPN3-209ENST00000466222 EIF5P55010 431 aaKnown RBP23.28■■□□□ 1.32
CAPN3-209ENST00000466222 HLFQ16534 295 aa23.28■■□□□ 1.32
CAPN3-209ENST00000466222 PXDNLA1KZ92 1463 aa23.28■■□□□ 1.32
CAPN3-209ENST00000466222 TJP1Q07157 1748 aa23.28■■□□□ 1.32
CAPN3-209ENST00000466222 ATP10DQ9P241 1426 aa23.28■■□□□ 1.32
CAPN3-209ENST00000466222 NEURL1BA8MQ27 555 aa23.27■■□□□ 1.32
CAPN3-209ENST00000466222 CHMP4BQ9H444 224 aaKnown RBP23.27■■□□□ 1.32
CAPN3-209ENST00000466222 AMIGO3Q86WK7 504 aa23.27■■□□□ 1.32
CAPN3-209ENST00000466222 BCL11AQ9H165 835 aa23.27■■□□□ 1.32
CAPN3-209ENST00000466222 NEXNQ0ZGT2 675 aa23.26■■□□□ 1.31
CAPN3-209ENST00000466222 BTAF1O14981 1849 aa23.26■■□□□ 1.31
CAPN3-209ENST00000466222 DZIP3Q86Y13 1208 aaKnown RBP23.25■■□□□ 1.31
CAPN3-209ENST00000466222 PROM2Q8N271 834 aa23.25■■□□□ 1.31
CAPN3-209ENST00000466222 LRRFIP2Q9Y608 721 aaKnown RBP23.25■■□□□ 1.31
CAPN3-209ENST00000466222 ALDH1L1O75891 902 aa23.25■■□□□ 1.31
CAPN3-209ENST00000466222 UBTFL1P0CB47 393 aaPredicted RBP23.25■■□□□ 1.31
CAPN3-209ENST00000466222 CEP85Q6P2H3 762 aa23.25■■□□□ 1.31
CAPN3-209ENST00000466222 KIF6Q6ZMV9 814 aa23.25■■□□□ 1.31
CAPN3-209ENST00000466222 GNAI2P04899 355 aa23.24■■□□□ 1.31
CAPN3-209ENST00000466222 GNAI3P08754 354 aa23.24■■□□□ 1.31
CAPN3-209ENST00000466222 C9orf78Q9NZ63 289 aaPredicted RBP23.24■■□□□ 1.31
CAPN3-209ENST00000466222 MAP3K15Q6ZN16 1313 aa23.24■■□□□ 1.31
CAPN3-209ENST00000466222 APBA3O96018 575 aa23.23■■□□□ 1.31
CAPN3-209ENST00000466222 GCKRQ14397 625 aa23.23■■□□□ 1.31
CAPN3-209ENST00000466222 RWDD1Q9H446 243 aaPredicted RBP23.23■■□□□ 1.31
CAPN3-209ENST00000466222 GRM8O00222 908 aa23.22■■□□□ 1.31
CAPN3-209ENST00000466222 HDAC1Q13547 482 aaPredicted RBP23.22■■□□□ 1.31
CAPN3-209ENST00000466222 GNPATO15228 680 aa23.21■■□□□ 1.31
CAPN3-209ENST00000466222 C8orf34Q49A92 452 aa23.21■■□□□ 1.31
CAPN3-209ENST00000466222 ANKRD44Q8N8A2 993 aa23.21■■□□□ 1.31
CAPN3-209ENST00000466222 CNTNAP4Q9C0A0 1308 aa23.21■■□□□ 1.31
CAPN3-209ENST00000466222 GPTP24298 496 aa23.2■■□□□ 1.3
CAPN3-209ENST00000466222 TCIRG1Q13488 830 aa23.2■■□□□ 1.3
CAPN3-209ENST00000466222 GIGYF2Q6Y7W6 1299 aaKnown RBP23.2■■□□□ 1.3
CAPN3-209ENST00000466222 SBF2Q86WG5 1849 aa23.2■■□□□ 1.3
CAPN3-209ENST00000466222 PNMA6EA0A0J9YXQ4 647 aa23.2■■□□□ 1.3
CAPN3-209ENST00000466222 TXNRD1Q16881 649 aa23.2■■□□□ 1.3
CAPN3-209ENST00000466222 A0A087WZG4 1122 aa23.19■■□□□ 1.3
CAPN3-209ENST00000466222 KAZALD1Q96I82 304 aa23.19■■□□□ 1.3
CAPN3-209ENST00000466222 SUCLG2Q96I99 432 aa23.19■■□□□ 1.3
CAPN3-209ENST00000466222 CAMTA2O94983 1202 aa23.18■■□□□ 1.3
CAPN3-209ENST00000466222 RC3H1Q5TC82 1133 aaKnown RBP23.18■■□□□ 1.3
CAPN3-209ENST00000466222 ISCA1Q9BUE6 129 aa23.18■■□□□ 1.3
CAPN3-209ENST00000466222 CACNA1FO60840 1977 aa23.18■■□□□ 1.3
CAPN3-209ENST00000466222 COL15A1P39059 1388 aa23.18■■□□□ 1.3
CAPN3-209ENST00000466222 UBE3BQ7Z3V4 1068 aa23.18■■□□□ 1.3
CAPN3-209ENST00000466222 RPAP2Q8IXW5 612 aaPredicted RBP23.18■■□□□ 1.3
CAPN3-209ENST00000466222 RPS6KA4O75676 772 aa23.17■■□□□ 1.3
CAPN3-209ENST00000466222 PHF14O94880 888 aa23.17■■□□□ 1.3
CAPN3-209ENST00000466222 UTYO14607 1347 aa23.17■■□□□ 1.3
CAPN3-209ENST00000466222 EPHA10Q5JZY3 1008 aa23.16■■□□□ 1.3
CAPN3-209ENST00000466222 CWC25Q9NXE8 425 aaPredicted RBP23.16■■□□□ 1.3
CAPN3-209ENST00000466222 ERVV-1B6SEH8 477 aa23.16■■□□□ 1.3
CAPN3-209ENST00000466222 PLSCR1O15162 318 aa23.15■■□□□ 1.3
CAPN3-209ENST00000466222 SLC27A3Q5K4L6 730 aa23.15■■□□□ 1.3
CAPN3-209ENST00000466222 SYNE4Q8N205 404 aa23.15■■□□□ 1.3
CAPN3-209ENST00000466222 SRP68Q9UHB9 627 aaKnown RBP23.15■■□□□ 1.3
CAPN3-209ENST00000466222 CASP7P55210 303 aa23.14■■□□□ 1.3
CAPN3-209ENST00000466222 ATP8B2P98198 1209 aa23.14■■□□□ 1.3
CAPN3-209ENST00000466222 PPP1R42Q7Z4L9 355 aa23.14■■□□□ 1.3
CAPN3-209ENST00000466222 CCDC191Q8NCU4 936 aa23.14■■□□□ 1.3
CAPN3-209ENST00000466222 BICC1Q9H694 974 aaKnown RBP23.14■■□□□ 1.3
CAPN3-209ENST00000466222 RTCBQ9Y3I0 505 aaKnown RBP23.14■■□□□ 1.3
CAPN3-209ENST00000466222 MYH14Q7Z406 1995 aaKnown RBP23.14■■□□□ 1.29
CAPN3-209ENST00000466222 UBN2Q6ZU65 1347 aa23.14■■□□□ 1.29
CAPN3-209ENST00000466222 SMC5Q8IY18 1101 aa23.14■■□□□ 1.29
CAPN3-209ENST00000466222 ARHGEF1Q92888 912 aaKnown RBP23.14■■□□□ 1.29
CAPN3-209ENST00000466222 AK7Q96M32 723 aa23.14■■□□□ 1.29
CAPN3-209ENST00000466222 H7C1W4 665 aa23.13■■□□□ 1.29
CAPN3-209ENST00000466222 NLRP10Q86W26 655 aa23.13■■□□□ 1.29
CAPN3-209ENST00000466222 PDZRN3Q9UPQ7 1066 aa23.13■■□□□ 1.29
CAPN3-209ENST00000466222 CICQ96RK0 1608 aaPredicted RBP23.13■■□□□ 1.29
CAPN3-209ENST00000466222 RGS3P49796 1198 aa23.12■■□□□ 1.29
CAPN3-209ENST00000466222 FAM89AQ96GI7 184 aa23.12■■□□□ 1.29
CAPN3-209ENST00000466222 FAM177BA6PVY3 158 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms