RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 MST1RQ04912 1400 aa10.86□□□□□ -0.67
SYNE1-217ENST00000466159 DDX58O95786 925 aaKnown RBP10.86□□□□□ -0.67
SYNE1-217ENST00000466159 TATP17735 454 aaPredicted RBP10.86□□□□□ -0.67
SYNE1-217ENST00000466159 CUL4AQ13619 759 aa10.86□□□□□ -0.67
SYNE1-217ENST00000466159 CHRNA2Q15822 529 aa10.86□□□□□ -0.67
SYNE1-217ENST00000466159 BICC1Q9H694 974 aaKnown RBP10.86□□□□□ -0.67
SYNE1-217ENST00000466159 TTC41PQ6P2S7 1318 aa10.85□□□□□ -0.67
SYNE1-217ENST00000466159 PRPF40AO75400 957 aaKnown RBP10.85□□□□□ -0.67
SYNE1-217ENST00000466159 GLRX3O76003 335 aaKnown RBP10.85□□□□□ -0.67
SYNE1-217ENST00000466159 IGKV5-2P06315 115 aa10.85□□□□□ -0.67
SYNE1-217ENST00000466159 CSB-PGBD3P0DP91 1061 aa10.85□□□□□ -0.67
SYNE1-217ENST00000466159 NCLP19338 710 aaKnown RBP10.85□□□□□ -0.67
SYNE1-217ENST00000466159 RIC3Q7Z5B4 369 aa10.85□□□□□ -0.67
SYNE1-217ENST00000466159 LSG1Q9H089 658 aaKnown RBP10.85□□□□□ -0.67
SYNE1-217ENST00000466159 RRAGDQ9NQL2 400 aaPredicted RBP10.85□□□□□ -0.67
SYNE1-217ENST00000466159 SPG7Q9UQ90 795 aa10.85□□□□□ -0.67
SYNE1-217ENST00000466159 MEGF6O75095 1541 aa10.85□□□□□ -0.67
SYNE1-217ENST00000466159 RAD50Q92878 1312 aa10.85□□□□□ -0.67
SYNE1-217ENST00000466159 SCN11AQ9UI33 1791 aa10.85□□□□□ -0.67
SYNE1-217ENST00000466159 ZNF496Q96IT1 587 aaPredicted RBP10.85□□□□□ -0.67
SYNE1-217ENST00000466159 C5P01031 1676 aa10.84□□□□□ -0.67
SYNE1-217ENST00000466159 EPB41L2O43491 1005 aaKnown RBP10.84□□□□□ -0.67
SYNE1-217ENST00000466159 IFIT2P09913 472 aaKnown RBP10.84□□□□□ -0.67
SYNE1-217ENST00000466159 PIP4K2AP48426 406 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-217ENST00000466159 RASEFQ8IZ41 740 aa10.84□□□□□ -0.67
SYNE1-217ENST00000466159 ECHDC1Q9NTX5 307 aa10.84□□□□□ -0.67
SYNE1-217ENST00000466159 SNX14Q9Y5W7 946 aa10.84□□□□□ -0.67
SYNE1-217ENST00000466159 UTYO14607 1347 aa10.84□□□□□ -0.67
SYNE1-217ENST00000466159 SASH1O94885 1247 aa10.84□□□□□ -0.67
SYNE1-217ENST00000466159 CAVIN1Q6NZI2 390 aaKnown RBP10.84□□□□□ -0.67
SYNE1-217ENST00000466159 COPS6Q7L5N1 327 aa10.84□□□□□ -0.67
SYNE1-217ENST00000466159 AACSQ86V21 672 aa10.84□□□□□ -0.67
SYNE1-217ENST00000466159 IFNL2Q8IZJ0 200 aa10.84□□□□□ -0.67
SYNE1-217ENST00000466159 XAGE3Q8WTP9 111 aa10.84□□□□□ -0.67
SYNE1-217ENST00000466159 HDAC5Q9UQL6 1122 aa10.84□□□□□ -0.67
SYNE1-217ENST00000466159 STRCP1A6NGW2 1772 aa10.83□□□□□ -0.68
SYNE1-217ENST00000466159 LMTK3Q96Q04 1460 aa10.83□□□□□ -0.68
SYNE1-217ENST00000466159 KIAA1211Q6ZU35 1233 aa10.83□□□□□ -0.68
SYNE1-217ENST00000466159 ERC1Q8IUD2 1116 aa10.83□□□□□ -0.68
SYNE1-217ENST00000466159 KLHDC4Q8TBB5 520 aa10.83□□□□□ -0.68
SYNE1-217ENST00000466159 INTS4Q96HW7 963 aaKnown RBP10.83□□□□□ -0.68
SYNE1-217ENST00000466159 USP16Q9Y5T5 823 aa10.83□□□□□ -0.68
SYNE1-217ENST00000466159 COL18A1P39060 1754 aa10.83□□□□□ -0.68
SYNE1-217ENST00000466159 CRYBG1Q9Y4K1 1723 aa10.83□□□□□ -0.68
SYNE1-217ENST00000466159 CYP27B1O15528 508 aa10.83□□□□□ -0.68
SYNE1-217ENST00000466159 BRD1O95696 1058 aa10.83□□□□□ -0.68
SYNE1-217ENST00000466159 LARP1Q6PKG0 1096 aaKnown RBP10.83□□□□□ -0.68
SYNE1-217ENST00000466159 GPT2Q8TD30 523 aa10.83□□□□□ -0.68
SYNE1-217ENST00000466159 EAF2Q96CJ1 260 aaPredicted RBP10.83□□□□□ -0.68
SYNE1-217ENST00000466159 SIL1Q9H173 461 aa10.83□□□□□ -0.68
SYNE1-217ENST00000466159 DIAPH3Q9NSV4 1193 aa10.83□□□□□ -0.68
SYNE1-217ENST00000466159 NEURL1BA8MQ27 555 aa10.82□□□□□ -0.68
SYNE1-217ENST00000466159 G3BP1Q13283 466 aaKnown RBP eCLIP10.82□□□□□ -0.68
SYNE1-217ENST00000466159 JARID2Q92833 1246 aaPredicted RBP10.82□□□□□ -0.68
SYNE1-217ENST00000466159 MYD88Q99836 296 aa10.82□□□□□ -0.68
SYNE1-217ENST00000466159 LARP6Q9BRS8 491 aaKnown RBP10.82□□□□□ -0.68
SYNE1-217ENST00000466159 CCDC8Q9H0W5 538 aaPredicted RBP10.82□□□□□ -0.68
SYNE1-217ENST00000466159 PTH1RQ03431 593 aa10.82□□□□□ -0.68
SYNE1-217ENST00000466159 EPHA10Q5JZY3 1008 aa10.82□□□□□ -0.68
SYNE1-217ENST00000466159 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.82□□□□□ -0.68
SYNE1-217ENST00000466159 NEXNQ0ZGT2 675 aa10.81□□□□□ -0.68
SYNE1-217ENST00000466159 GCKRQ14397 625 aa10.81□□□□□ -0.68
SYNE1-217ENST00000466159 ZSCAN23Q3MJ62 389 aa10.81□□□□□ -0.68
SYNE1-217ENST00000466159 GPATCH3Q96I76 525 aa10.81□□□□□ -0.68
SYNE1-217ENST00000466159 TLR7Q9NYK1 1049 aaKnown RBP10.81□□□□□ -0.68
SYNE1-217ENST00000466159 RBM27Q9P2N5 1060 aaKnown RBP10.81□□□□□ -0.68
SYNE1-217ENST00000466159 NSFL1CQ9UNZ2 370 aaKnown RBP10.81□□□□□ -0.68
SYNE1-217ENST00000466159 CPA1P15085 419 aa10.81□□□□□ -0.68
SYNE1-217ENST00000466159 ANKRD13DQ6ZTN6 518 aa10.81□□□□□ -0.68
SYNE1-217ENST00000466159 LRP10Q7Z4F1 713 aa10.81□□□□□ -0.68
SYNE1-217ENST00000466159 TTC5Q8N0Z6 440 aa10.81□□□□□ -0.68
SYNE1-217ENST00000466159 DCAF5Q96JK2 942 aa10.81□□□□□ -0.68
SYNE1-217ENST00000466159 TTC14Q96N46 770 aa10.81□□□□□ -0.68
SYNE1-217ENST00000466159 METTL22Q9BUU2 404 aaPredicted RBP10.81□□□□□ -0.68
SYNE1-217ENST00000466159 SNRPA1P09661 255 aaKnown RBP10.8□□□□□ -0.68
SYNE1-217ENST00000466159 AK2P54819 239 aa10.8□□□□□ -0.68
SYNE1-217ENST00000466159 RUFY2Q8WXA3 655 aa10.8□□□□□ -0.68
SYNE1-217ENST00000466159 EVI5LQ96CN4 794 aa10.8□□□□□ -0.68
SYNE1-217ENST00000466159 ZNF445P59923 1031 aa10.8□□□□□ -0.68
SYNE1-217ENST00000466159 FOXD4L6Q3SYB3 417 aaPredicted RBP10.8□□□□□ -0.68
SYNE1-217ENST00000466159 FOXD4L3Q6VB84 417 aaPredicted RBP10.8□□□□□ -0.68
SYNE1-217ENST00000466159 CADPS2Q86UW7 1296 aa10.8□□□□□ -0.68
SYNE1-217ENST00000466159 TNS3Q68CZ2 1445 aa10.8□□□□□ -0.68
SYNE1-217ENST00000466159 CASTP20810 708 aaKnown RBP10.79□□□□□ -0.68
SYNE1-217ENST00000466159 PRPF40BQ6NWY9 871 aaKnown RBP10.79□□□□□ -0.68
SYNE1-217ENST00000466159 RUFY3Q7L099 469 aa10.79□□□□□ -0.68
SYNE1-217ENST00000466159 BOLA2Q9H3K6 86 aa10.79□□□□□ -0.68
SYNE1-217ENST00000466159 NASPP49321 788 aaPredicted RBP10.79□□□□□ -0.68
SYNE1-217ENST00000466159 CABP4P57796 275 aa10.79□□□□□ -0.68
SYNE1-217ENST00000466159 ADCK5Q3MIX3 580 aa10.79□□□□□ -0.68
SYNE1-217ENST00000466159 FAM227BQ96M60 508 aa10.79□□□□□ -0.68
SYNE1-217ENST00000466159 FMNL2Q96PY5 1086 aa10.79□□□□□ -0.68
SYNE1-217ENST00000466159 SPATA31A3Q5VYP0 1347 aa10.79□□□□□ -0.68
SYNE1-217ENST00000466159 DCCP43146 1447 aa10.79□□□□□ -0.68
SYNE1-217ENST00000466159 ATP5J2-PTCD1G3V325 749 aa10.78□□□□□ -0.68
SYNE1-217ENST00000466159 PTCD1O75127 700 aaKnown RBP10.78□□□□□ -0.68
SYNE1-217ENST00000466159 TMEM63CQ9P1W3 806 aa10.78□□□□□ -0.68
SYNE1-217ENST00000466159 HSPA2P54652 639 aa10.78□□□□□ -0.68
SYNE1-217ENST00000466159 DDX54Q8TDD1 881 aaKnown RBP10.78□□□□□ -0.68
SYNE1-217ENST00000466159 LIMCH1Q9UPQ0 1083 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms