RNA–Protein interactions for RNA: ENST00000448572.1

SSBP3-209, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 454 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-209ENST00000448572 L3MBTL3Q96JM7 780 aaPredicted RBP13.81□□□□□ -0.2
SSBP3-209ENST00000448572 AFDNP55196 1824 aaKnown RBP13.8□□□□□ -0.2
SSBP3-209ENST00000448572 ALDH1B1P30837 517 aa13.8□□□□□ -0.2
SSBP3-209ENST00000448572 GRIPAP1Q4V328 841 aa13.8□□□□□ -0.2
SSBP3-209ENST00000448572 CC2D1BQ5T0F9 858 aaKnown RBP13.8□□□□□ -0.2
SSBP3-209ENST00000448572 PRDM10Q9NQV6 1147 aa13.8□□□□□ -0.2
SSBP3-209ENST00000448572 TMEM88BA6NKF7 163 aa13.79□□□□□ -0.2
SSBP3-209ENST00000448572 POTECB2RU33 542 aa13.79□□□□□ -0.2
SSBP3-209ENST00000448572 DDNO94850 711 aaPredicted RBP13.79□□□□□ -0.2
SSBP3-209ENST00000448572 CAMTA2O94983 1202 aa13.79□□□□□ -0.2
SSBP3-209ENST00000448572 NEFMP07197 916 aa13.79□□□□□ -0.2
SSBP3-209ENST00000448572 SNRPA1P09661 255 aaKnown RBP13.79□□□□□ -0.2
SSBP3-209ENST00000448572 GTF2E1P29083 439 aaPredicted RBP13.79□□□□□ -0.2
SSBP3-209ENST00000448572 CTCFP49711 727 aaPredicted RBP13.79□□□□□ -0.2
SSBP3-209ENST00000448572 FKBP4Q02790 459 aaKnown RBP eCLIP13.79□□□□□ -0.2
SSBP3-209ENST00000448572 IL17REQ8NFR9 667 aa13.79□□□□□ -0.2
SSBP3-209ENST00000448572 MKRN1Q9UHC7 482 aaKnown RBP13.79□□□□□ -0.2
SSBP3-209ENST00000448572 KIF7Q2M1P5 1343 aa13.79□□□□□ -0.2
SSBP3-209ENST00000448572 UBR2Q8IWV8 1755 aa13.78□□□□□ -0.2
SSBP3-209ENST00000448572 CC2D2BQ6DHV5 1058 aa13.78□□□□□ -0.2
SSBP3-209ENST00000448572 JDP2Q8WYK2 163 aa13.78□□□□□ -0.2
SSBP3-209ENST00000448572 HACL1Q9UJ83 578 aa13.78□□□□□ -0.2
SSBP3-209ENST00000448572 CNTNAP1P78357 1384 aa13.78□□□□□ -0.2
SSBP3-209ENST00000448572 CEMIPQ8WUJ3 1361 aa13.78□□□□□ -0.2
SSBP3-209ENST00000448572 SCN7AQ01118 1682 aa13.78□□□□□ -0.2
SSBP3-209ENST00000448572 PER1O15534 1290 aaPredicted RBP13.77□□□□□ -0.21
SSBP3-209ENST00000448572 A1BGP04217 495 aa13.77□□□□□ -0.21
SSBP3-209ENST00000448572 NYXQ9GZU5 481 aa13.77□□□□□ -0.21
SSBP3-209ENST00000448572 TMX4Q9H1E5 349 aaPredicted RBP13.77□□□□□ -0.21
SSBP3-209ENST00000448572 TAF1DQ9H5J8 278 aaPredicted RBP13.77□□□□□ -0.21
SSBP3-209ENST00000448572 CLEC11AQ9Y240 323 aa13.77□□□□□ -0.21
SSBP3-209ENST00000448572 HTATSF1O43719 755 aaKnown RBP13.76□□□□□ -0.21
SSBP3-209ENST00000448572 PASKQ96RG2 1323 aa13.75□□□□□ -0.21
SSBP3-209ENST00000448572 LMOD1P29536 600 aaPredicted RBP13.75□□□□□ -0.21
SSBP3-209ENST00000448572 MAP2K1Q02750 393 aaPredicted RBP13.75□□□□□ -0.21
SSBP3-209ENST00000448572 EAPPQ56P03 285 aaPredicted RBP13.75□□□□□ -0.21
SSBP3-209ENST00000448572 NIP7Q9Y221 180 aaKnown RBP eCLIP13.75□□□□□ -0.21
SSBP3-209ENST00000448572 KLRG2A4D1S0 409 aaPredicted RBP13.74□□□□□ -0.21
SSBP3-209ENST00000448572 PRKAR2BP31323 418 aa13.74□□□□□ -0.21
SSBP3-209ENST00000448572 EPHX2P34913 555 aa13.74□□□□□ -0.21
SSBP3-209ENST00000448572 EIF6P56537 245 aaKnown RBP13.74□□□□□ -0.21
SSBP3-209ENST00000448572 GPC2Q8N158 579 aa13.74□□□□□ -0.21
SSBP3-209ENST00000448572 CCDC24Q8N4L8 307 aa13.74□□□□□ -0.21
SSBP3-209ENST00000448572 BEGAINQ9BUH8 593 aa13.74□□□□□ -0.21
SSBP3-209ENST00000448572 FER1L6Q2WGJ9 1857 aa13.74□□□□□ -0.21
SSBP3-209ENST00000448572 DICER1Q9UPY3 1922 aaKnown RBP13.73□□□□□ -0.21
SSBP3-209ENST00000448572 IARSP41252 1262 aaKnown RBP13.73□□□□□ -0.21
SSBP3-209ENST00000448572 PNISRQ8TF01 805 aaKnown RBP13.73□□□□□ -0.21
SSBP3-209ENST00000448572 SCN4AP35499 1836 aa13.72□□□□□ -0.21
SSBP3-209ENST00000448572 ECE1P42892 770 aa13.72□□□□□ -0.21
SSBP3-209ENST00000448572 DEFB115Q30KQ5 88 aa13.72□□□□□ -0.21
SSBP3-209ENST00000448572 C7orf43Q8WVR3 580 aa13.72□□□□□ -0.21
SSBP3-209ENST00000448572 PSMD1Q99460 953 aa13.72□□□□□ -0.21
SSBP3-209ENST00000448572 USP16Q9Y5T5 823 aa13.72□□□□□ -0.21
SSBP3-209ENST00000448572 RASSF10A6NK89 507 aa13.71□□□□□ -0.21
SSBP3-209ENST00000448572 FOXN1O15353 648 aa13.71□□□□□ -0.21
SSBP3-209ENST00000448572 U2AF1L5P0DN76 240 aaPredicted RBP13.71□□□□□ -0.21
SSBP3-209ENST00000448572 U2AF1Q01081 240 aaKnown RBP eCLIP13.71□□□□□ -0.21
SSBP3-209ENST00000448572 CNTROBQ8N137 903 aa13.71□□□□□ -0.21
SSBP3-209ENST00000448572 RPGRQ92834 1020 aaKnown RBP13.71□□□□□ -0.21
SSBP3-209ENST00000448572 ZNF277Q9NRM2 450 aaPredicted RBP13.71□□□□□ -0.21
SSBP3-209ENST00000448572 ANKRD31Q8N7Z5 1873 aa13.7□□□□□ -0.22
SSBP3-209ENST00000448572 COL3A1P02461 1466 aaPredicted RBP13.7□□□□□ -0.22
SSBP3-209ENST00000448572 ERVV-1B6SEH8 477 aa13.7□□□□□ -0.22
SSBP3-209ENST00000448572 FZD9O00144 591 aa13.7□□□□□ -0.22
SSBP3-209ENST00000448572 ITGBL1O95965 494 aaPredicted RBP13.7□□□□□ -0.22
SSBP3-209ENST00000448572 POTEIP0CG38 1075 aa13.7□□□□□ -0.22
SSBP3-209ENST00000448572 POTEJP0CG39 1038 aa13.7□□□□□ -0.22
SSBP3-209ENST00000448572 VEGFBP49765 207 aa13.7□□□□□ -0.22
SSBP3-209ENST00000448572 KIF6Q6ZMV9 814 aa13.7□□□□□ -0.22
SSBP3-209ENST00000448572 RSPH6AQ9H0K4 717 aa13.7□□□□□ -0.22
SSBP3-209ENST00000448572 WBP1LQ9NX94 342 aa13.7□□□□□ -0.22
SSBP3-209ENST00000448572 ABT1Q9ULW3 272 aaKnown RBP13.7□□□□□ -0.22
SSBP3-209ENST00000448572 COL11A2P13942 1736 aaPredicted RBP13.7□□□□□ -0.22
SSBP3-209ENST00000448572 CCDC88AQ3V6T2 1871 aa13.7□□□□□ -0.22
SSBP3-209ENST00000448572 VIRMAQ69YN4 1812 aaKnown RBP13.69□□□□□ -0.22
SSBP3-209ENST00000448572 ARFGEF2Q9Y6D5 1785 aa13.69□□□□□ -0.22
SSBP3-209ENST00000448572 TAF7Q15545 349 aaPredicted RBP13.69□□□□□ -0.22
SSBP3-209ENST00000448572 SYNE4Q8N205 404 aa13.69□□□□□ -0.22
SSBP3-209ENST00000448572 VPS33BQ9H267 617 aa13.69□□□□□ -0.22
SSBP3-209ENST00000448572 PNNQ9H307 717 aaKnown RBP13.69□□□□□ -0.22
SSBP3-209ENST00000448572 RNF123Q5XPI4 1314 aa13.68□□□□□ -0.22
SSBP3-209ENST00000448572 IBTKQ9P2D0 1353 aaPredicted RBP13.68□□□□□ -0.22
SSBP3-209ENST00000448572 BCORQ6W2J9 1755 aa13.68□□□□□ -0.22
SSBP3-209ENST00000448572 ZNF541Q9H0D2 1346 aa13.67□□□□□ -0.22
SSBP3-209ENST00000448572 FAM177BA6PVY3 158 aa13.67□□□□□ -0.22
SSBP3-209ENST00000448572 CNGB1Q14028 1251 aaPredicted RBP13.67□□□□□ -0.22
SSBP3-209ENST00000448572 CRY2Q49AN0 593 aa13.67□□□□□ -0.22
SSBP3-209ENST00000448572 USP50Q70EL3 339 aaPredicted RBP13.67□□□□□ -0.22
SSBP3-209ENST00000448572 SUPT20HQ8NEM7 779 aa13.67□□□□□ -0.22
SSBP3-209ENST00000448572 RBM17Q96I25 401 aaKnown RBP13.67□□□□□ -0.22
SSBP3-209ENST00000448572 PHACTR3Q96KR7 559 aa13.67□□□□□ -0.22
SSBP3-209ENST00000448572 SLX4Q8IY92 1834 aa13.67□□□□□ -0.22
SSBP3-209ENST00000448572 WDR33Q9C0J8 1336 aaKnown RBP13.66□□□□□ -0.22
SSBP3-209ENST00000448572 RIC1Q4ADV7 1423 aa13.66□□□□□ -0.22
SSBP3-209ENST00000448572 SIPA1L3O60292 1781 aaPredicted RBP13.66□□□□□ -0.22
SSBP3-209ENST00000448572 KCNQ3O43525 872 aa13.66□□□□□ -0.22
SSBP3-209ENST00000448572 CA12O43570 354 aa13.66□□□□□ -0.22
SSBP3-209ENST00000448572 LBX1P52954 281 aa13.66□□□□□ -0.22
SSBP3-209ENST00000448572 MCM10Q7L590 875 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms