RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 TMEM266Q2M3C6 531 aa10.24□□□□□ -0.77
NIPBL-202ENST00000448238 INTS8Q75QN2 995 aaKnown RBP10.24□□□□□ -0.77
NIPBL-202ENST00000448238 XAB2Q9HCS7 855 aaKnown RBP10.24□□□□□ -0.77
NIPBL-202ENST00000448238 RRBP1Q9P2E9 1410 aaKnown RBP10.24□□□□□ -0.77
NIPBL-202ENST00000448238 AMPD3Q01432 767 aa10.23□□□□□ -0.77
NIPBL-202ENST00000448238 CRBNQ96SW2 442 aa10.23□□□□□ -0.77
NIPBL-202ENST00000448238 EHMT1Q9H9B1 1298 aa10.23□□□□□ -0.77
NIPBL-202ENST00000448238 UACAQ9BZF9 1416 aa10.23□□□□□ -0.77
NIPBL-202ENST00000448238 TRIM60Q495X7 471 aa10.23□□□□□ -0.77
NIPBL-202ENST00000448238 UBAC1Q9BSL1 405 aa10.23□□□□□ -0.77
NIPBL-202ENST00000448238 SRRTQ9BXP5 876 aaKnown RBP10.23□□□□□ -0.77
NIPBL-202ENST00000448238 PPP1R12CQ9BZL4 782 aa10.23□□□□□ -0.77
NIPBL-202ENST00000448238 WDR46O15213 610 aaKnown RBP10.23□□□□□ -0.77
NIPBL-202ENST00000448238 CUL4BQ13620 913 aa10.23□□□□□ -0.77
NIPBL-202ENST00000448238 RBBP5Q15291 538 aaKnown RBP10.23□□□□□ -0.77
NIPBL-202ENST00000448238 SMARCC2Q8TAQ2 1214 aa10.23□□□□□ -0.77
NIPBL-202ENST00000448238 C16orf45Q96MC5 204 aaPredicted RBP10.23□□□□□ -0.77
NIPBL-202ENST00000448238 LNPKQ9C0E8 428 aa10.23□□□□□ -0.77
NIPBL-202ENST00000448238 RPGRIP1Q96KN7 1286 aa10.23□□□□□ -0.77
NIPBL-202ENST00000448238 SRCIN1Q9C0H9 1055 aa10.23□□□□□ -0.77
NIPBL-202ENST00000448238 CAPN2P17655 700 aa10.22□□□□□ -0.77
NIPBL-202ENST00000448238 RASSF2P50749 326 aa10.22□□□□□ -0.77
NIPBL-202ENST00000448238 POTEDQ86YR6 584 aa10.22□□□□□ -0.77
NIPBL-202ENST00000448238 POTEB3A0JP26 581 aa10.22□□□□□ -0.77
NIPBL-202ENST00000448238 POTEBQ6S5H4 581 aa10.22□□□□□ -0.77
NIPBL-202ENST00000448238 UBE2Q2Q8WVN8 375 aa10.22□□□□□ -0.77
NIPBL-202ENST00000448238 ZHX1Q9UKY1 873 aaPredicted RBP10.22□□□□□ -0.77
NIPBL-202ENST00000448238 SATB2Q9UPW6 733 aa10.22□□□□□ -0.77
NIPBL-202ENST00000448238 SIN3AQ96ST3 1273 aa10.22□□□□□ -0.77
NIPBL-202ENST00000448238 ANKFY1Q9P2R3 1169 aa10.22□□□□□ -0.77
NIPBL-202ENST00000448238 CEP85LQ5SZL2 805 aa10.22□□□□□ -0.77
NIPBL-202ENST00000448238 SYNCQ9H7C4 482 aa10.22□□□□□ -0.77
NIPBL-202ENST00000448238 FAN1Q9Y2M0 1017 aa10.22□□□□□ -0.77
NIPBL-202ENST00000448238 CRCPO75575 148 aa10.22□□□□□ -0.77
NIPBL-202ENST00000448238 AP1ARQ63HQ0 302 aa10.22□□□□□ -0.77
NIPBL-202ENST00000448238 UTP14AQ9BVJ6 771 aaKnown RBP10.22□□□□□ -0.77
NIPBL-202ENST00000448238 SCAND2PQ9GZW5 306 aaPredicted RBP10.22□□□□□ -0.77
NIPBL-202ENST00000448238 ATP2C2O75185 946 aa10.21□□□□□ -0.77
NIPBL-202ENST00000448238 GSDMBQ8TAX9 411 aa10.21□□□□□ -0.77
NIPBL-202ENST00000448238 BRPF3Q9ULD4 1205 aa10.21□□□□□ -0.77
NIPBL-202ENST00000448238 ATAD2Q6PL18 1390 aa10.21□□□□□ -0.77
NIPBL-202ENST00000448238 GNAI1P63096 354 aa10.21□□□□□ -0.77
NIPBL-202ENST00000448238 SNW1Q13573 536 aaKnown RBP10.21□□□□□ -0.77
NIPBL-202ENST00000448238 LIMCH1Q9UPQ0 1083 aa10.21□□□□□ -0.77
NIPBL-202ENST00000448238 DAAM1Q9Y4D1 1078 aa10.21□□□□□ -0.77
NIPBL-202ENST00000448238 CETN3O15182 167 aa10.21□□□□□ -0.77
NIPBL-202ENST00000448238 CLNS1AP54105 237 aaKnown RBP10.21□□□□□ -0.77
NIPBL-202ENST00000448238 FYB2Q5VWT5 728 aa10.21□□□□□ -0.77
NIPBL-202ENST00000448238 BUB1BO60566 1050 aaPredicted RBP10.21□□□□□ -0.77
NIPBL-202ENST00000448238 SMIM24O75264 130 aa10.21□□□□□ -0.77
NIPBL-202ENST00000448238 CCDC62Q6P9F0 684 aa10.21□□□□□ -0.77
NIPBL-202ENST00000448238 Q9H521 79 aa10.21□□□□□ -0.77
NIPBL-202ENST00000448238 GEN1Q17RS7 908 aa10.21□□□□□ -0.78
NIPBL-202ENST00000448238 LRRC43Q8N309 656 aa10.21□□□□□ -0.78
NIPBL-202ENST00000448238 HSP90AA5PQ58FG0 334 aa10.21□□□□□ -0.78
NIPBL-202ENST00000448238 CCDC183Q5T5S1 534 aa10.21□□□□□ -0.78
NIPBL-202ENST00000448238 KIF6Q6ZMV9 814 aa10.21□□□□□ -0.78
NIPBL-202ENST00000448238 HAUS2Q9NVX0 235 aa10.21□□□□□ -0.78
NIPBL-202ENST00000448238 KANK3Q6NY19 840 aa10.2□□□□□ -0.78
NIPBL-202ENST00000448238 LMBR1Q8WVP7 490 aa10.2□□□□□ -0.78
NIPBL-202ENST00000448238 PAWRQ96IZ0 340 aaKnown RBP10.2□□□□□ -0.78
NIPBL-202ENST00000448238 GBP5Q96PP8 586 aa10.2□□□□□ -0.78
NIPBL-202ENST00000448238 LRRC27Q9C0I9 530 aa10.2□□□□□ -0.78
NIPBL-202ENST00000448238 STX6O43752 255 aa10.2□□□□□ -0.78
NIPBL-202ENST00000448238 SYTL4Q96C24 671 aaPredicted RBP10.2□□□□□ -0.78
NIPBL-202ENST00000448238 K7ELQ4 463 aaPredicted RBP10.2□□□□□ -0.78
NIPBL-202ENST00000448238 GIGYF1O75420 1035 aaPredicted RBP10.2□□□□□ -0.78
NIPBL-202ENST00000448238 BLOC1S2Q6QNY1 142 aa10.2□□□□□ -0.78
NIPBL-202ENST00000448238 MTRF1LQ9UGC7 380 aaKnown RBP10.2□□□□□ -0.78
NIPBL-202ENST00000448238 ELL2O00472 640 aaPredicted RBP10.2□□□□□ -0.78
NIPBL-202ENST00000448238 CLUL1Q15846 466 aa10.2□□□□□ -0.78
NIPBL-202ENST00000448238 CCDC40Q4G0X9 1142 aa10.2□□□□□ -0.78
NIPBL-202ENST00000448238 SRGAP1Q7Z6B7 1085 aa10.2□□□□□ -0.78
NIPBL-202ENST00000448238 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.2□□□□□ -0.783e-6■■■■□ 21.4
NIPBL-202ENST00000448238 STRN4Q9NRL3 753 aa10.2□□□□□ -0.78
NIPBL-202ENST00000448238 SPTY2D1Q68D10 685 aaPredicted RBP10.19□□□□□ -0.78
NIPBL-202ENST00000448238 COG7P83436 770 aa10.19□□□□□ -0.78
NIPBL-202ENST00000448238 PPFIA3O75145 1194 aa10.19□□□□□ -0.78
NIPBL-202ENST00000448238 RNF10Q8N5U6 811 aaKnown RBP10.19□□□□□ -0.78
NIPBL-202ENST00000448238 NKIRAS1Q9NYS0 192 aa10.19□□□□□ -0.78
NIPBL-202ENST00000448238 FAM169AQ9Y6X4 670 aa10.19□□□□□ -0.78
NIPBL-202ENST00000448238 TTC39AQ5SRH9 613 aa10.19□□□□□ -0.78
NIPBL-202ENST00000448238 LRCH2Q5VUJ6 765 aa10.19□□□□□ -0.78
NIPBL-202ENST00000448238 GPR161Q8N6U8 529 aaKnown RBP10.19□□□□□ -0.78
NIPBL-202ENST00000448238 WDR70Q9NW82 654 aa10.19□□□□□ -0.78
NIPBL-202ENST00000448238 HDAC9Q9UKV0 1011 aa10.19□□□□□ -0.78
NIPBL-202ENST00000448238 MSANTD4Q8NCY6 345 aa10.19□□□□□ -0.78
NIPBL-202ENST00000448238 MCUR1Q96AQ8 359 aa10.19□□□□□ -0.78
NIPBL-202ENST00000448238 SETD5Q9C0A6 1442 aa10.19□□□□□ -0.78
NIPBL-202ENST00000448238 CTCFLQ8NI51 663 aaPredicted RBP10.19□□□□□ -0.78
NIPBL-202ENST00000448238 PLEKHH1Q9ULM0 1364 aa10.18□□□□□ -0.78
NIPBL-202ENST00000448238 CTAGE9A4FU28 777 aa10.18□□□□□ -0.78
NIPBL-202ENST00000448238 ARHGAP25P42331 645 aa10.18□□□□□ -0.78
NIPBL-202ENST00000448238 FOXD1Q16676 465 aa10.18□□□□□ -0.78
NIPBL-202ENST00000448238 LARSQ9P2J5 1176 aaKnown RBP10.18□□□□□ -0.78
NIPBL-202ENST00000448238 GKAP1Q5VSY0 366 aaPredicted RBP10.18□□□□□ -0.78
NIPBL-202ENST00000448238 CROCCP2Q86T23 111 aa10.18□□□□□ -0.78
NIPBL-202ENST00000448238 CXorf38Q8TB03 319 aa10.18□□□□□ -0.78
NIPBL-202ENST00000448238 MPHOSPH6Q99547 160 aaKnown RBP10.18□□□□□ -0.78
NIPBL-202ENST00000448238 ZMYND15Q9H091 742 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms