RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 FOXD4L5Q5VV16 416 aaPredicted RBP22.81■■□□□ 1.24
HMGA1-205ENST00000447654 NUTM2GQ5VZR2 741 aa22.81■■□□□ 1.24
HMGA1-205ENST00000447654 FOXD4L4Q8WXT5 416 aaPredicted RBP22.81■■□□□ 1.24
HMGA1-205ENST00000447654 BRMS1Q9HCU9 246 aa22.81■■□□□ 1.24
HMGA1-205ENST00000447654 CCDC192P0DO97 292 aa22.8■■□□□ 1.24
HMGA1-205ENST00000447654 PTGS1P23219 599 aa22.8■■□□□ 1.24
HMGA1-205ENST00000447654 NEK4P51957 841 aa22.8■■□□□ 1.24
HMGA1-205ENST00000447654 MAPK8IP2Q13387 824 aaPredicted RBP22.8■■□□□ 1.24
HMGA1-205ENST00000447654 CEP135Q66GS9 1140 aa22.8■■□□□ 1.24
HMGA1-205ENST00000447654 MRPL50Q8N5N7 158 aaKnown RBP22.79■■□□□ 1.24
HMGA1-205ENST00000447654 RNF216Q9NWF9 866 aaPredicted RBP22.79■■□□□ 1.24
HMGA1-205ENST00000447654 FBXO38Q6PIJ6 1188 aa22.79■■□□□ 1.24
HMGA1-205ENST00000447654 SPC24Q8NBT2 197 aa22.79■■□□□ 1.24
HMGA1-205ENST00000447654 FAM200AQ8TCP9 573 aa22.79■■□□□ 1.24
HMGA1-205ENST00000447654 ATP6V1DQ9Y5K8 247 aa22.79■■□□□ 1.24
HMGA1-205ENST00000447654 RGS12O14924 1447 aa22.78■■□□□ 1.24
HMGA1-205ENST00000447654 MCM10Q7L590 875 aa22.78■■□□□ 1.24
HMGA1-205ENST00000447654 NEMFO60524 1076 aa22.77■■□□□ 1.24
HMGA1-205ENST00000447654 ABCC4O15439 1325 aa22.77■■□□□ 1.24
HMGA1-205ENST00000447654 KIF2AO00139 706 aaPredicted RBP22.77■■□□□ 1.24
HMGA1-205ENST00000447654 SMARCA5O60264 1052 aaPredicted RBP22.77■■□□□ 1.24
HMGA1-205ENST00000447654 SDSP20132 328 aa22.77■■□□□ 1.24
HMGA1-205ENST00000447654 MCCP23508 829 aa22.77■■□□□ 1.24
HMGA1-205ENST00000447654 PLCB2Q00722 1185 aa22.77■■□□□ 1.24
HMGA1-205ENST00000447654 TPD52L1Q16890 204 aaPredicted RBP22.77■■□□□ 1.24
HMGA1-205ENST00000447654 KRT24Q2M2I5 525 aa22.77■■□□□ 1.24
HMGA1-205ENST00000447654 RSPH14Q9UHP6 348 aa22.77■■□□□ 1.24
HMGA1-205ENST00000447654 FMN2Q9NZ56 1722 aa22.76■■□□□ 1.23
HMGA1-205ENST00000447654 FOXO3O43524 673 aa22.76■■□□□ 1.23
HMGA1-205ENST00000447654 TPM4P67936 248 aa22.76■■□□□ 1.23
HMGA1-205ENST00000447654 NAA30Q147X3 362 aaPredicted RBP22.76■■□□□ 1.23
HMGA1-205ENST00000447654 TWISTNBQ3B726 338 aaPredicted RBP22.76■■□□□ 1.23
HMGA1-205ENST00000447654 ZSCAN25Q6NSZ9 544 aa22.76■■□□□ 1.23
HMGA1-205ENST00000447654 CWC15Q9P013 229 aaKnown RBP22.76■■□□□ 1.23
HMGA1-205ENST00000447654 MARF1Q9Y4F3 1742 aaKnown RBP22.75■■□□□ 1.23
HMGA1-205ENST00000447654 H2AFXP16104 143 aaPredicted RBP22.75■■□□□ 1.23
HMGA1-205ENST00000447654 PSEN1P49768 467 aa22.75■■□□□ 1.23
HMGA1-205ENST00000447654 NLRP6P59044 892 aa22.75■■□□□ 1.23
HMGA1-205ENST00000447654 LMOD3Q0VAK6 560 aa22.75■■□□□ 1.23
HMGA1-205ENST00000447654 ANKLE2Q86XL3 938 aa22.75■■□□□ 1.23
HMGA1-205ENST00000447654 ANKARQ7Z5J8 1434 aa22.75■■□□□ 1.23
HMGA1-205ENST00000447654 CCDC186Q7Z3E2 898 aa22.74■■□□□ 1.23
HMGA1-205ENST00000447654 ZNF215Q9UL58 517 aaPredicted RBP22.74■■□□□ 1.23
HMGA1-205ENST00000447654 CHD2O14647 1828 aaKnown RBP22.74■■□□□ 1.23
HMGA1-205ENST00000447654 DHX16O60231 1041 aaKnown RBP22.74■■□□□ 1.23
HMGA1-205ENST00000447654 CERS3Q8IU89 383 aa22.74■■□□□ 1.23
HMGA1-205ENST00000447654 KCND1Q9NSA2 647 aa22.74■■□□□ 1.23
HMGA1-205ENST00000447654 TCHHQ07283 1943 aa22.74■■□□□ 1.23
HMGA1-205ENST00000447654 SLU7O95391 586 aaKnown RBP22.73■■□□□ 1.23
HMGA1-205ENST00000447654 CASQ1P31415 396 aa22.73■■□□□ 1.23
HMGA1-205ENST00000447654 V9GYY5 206 aaPredicted RBP22.73■■□□□ 1.23
HMGA1-205ENST00000447654 SBNO1A3KN83 1393 aa22.73■■□□□ 1.23
HMGA1-205ENST00000447654 EPB41L2O43491 1005 aaKnown RBP22.73■■□□□ 1.23
HMGA1-205ENST00000447654 CDC25BP30305 580 aa22.73■■□□□ 1.23
HMGA1-205ENST00000447654 GTF2A1P52655 376 aaPredicted RBP22.73■■□□□ 1.23
HMGA1-205ENST00000447654 GPS2Q13227 327 aa22.73■■□□□ 1.23
HMGA1-205ENST00000447654 ICE2Q659A1 982 aa22.73■■□□□ 1.23
HMGA1-205ENST00000447654 EYA1Q99502 592 aa22.73■■□□□ 1.23
HMGA1-205ENST00000447654 GDPD2Q9HCC8 539 aa22.73■■□□□ 1.23
HMGA1-205ENST00000447654 FLT4P35916 1363 aa22.73■■□□□ 1.23
HMGA1-205ENST00000447654 ATP8B1O43520 1251 aa22.72■■□□□ 1.23
HMGA1-205ENST00000447654 NYAP1Q6ZVC0 841 aa22.72■■□□□ 1.23
HMGA1-205ENST00000447654 SRCIN1Q9C0H9 1055 aa22.72■■□□□ 1.23
HMGA1-205ENST00000447654 PTPRCP08575 1304 aa22.72■■□□□ 1.23
HMGA1-205ENST00000447654 MTHFSDQ2M296 383 aaKnown RBP22.71■■□□□ 1.23
HMGA1-205ENST00000447654 PLA2G4DQ86XP0 818 aa22.71■■□□□ 1.23
HMGA1-205ENST00000447654 MYCBPQ99417 103 aaPredicted RBP22.71■■□□□ 1.23
HMGA1-205ENST00000447654 ZNF446Q9NWS9 450 aa22.71■■□□□ 1.23
HMGA1-205ENST00000447654 ELP1O95163 1332 aa22.7■■□□□ 1.23
HMGA1-205ENST00000447654 ZSCAN22P10073 491 aaPredicted RBP22.7■■□□□ 1.23
HMGA1-205ENST00000447654 AMPHP49418 695 aa22.7■■□□□ 1.23
HMGA1-205ENST00000447654 FHOD1Q9Y613 1164 aa22.7■■□□□ 1.23
HMGA1-205ENST00000447654 ZNF142P52746 1687 aaPredicted RBP22.7■■□□□ 1.23
HMGA1-205ENST00000447654 ARHGEF10O15013 1369 aa22.7■■□□□ 1.22
HMGA1-205ENST00000447654 GIMAP6Q6P9H5 292 aa22.7■■□□□ 1.22
HMGA1-205ENST00000447654 GOLGA6L1Q8N7Z2 621 aa22.7■■□□□ 1.22
HMGA1-205ENST00000447654 NCAPGQ9BPX3 1015 aa22.7■■□□□ 1.22
HMGA1-205ENST00000447654 LMTK3Q96Q04 1460 aa22.7■■□□□ 1.22
HMGA1-205ENST00000447654 CHL1O00533 1208 aa22.69■■□□□ 1.22
HMGA1-205ENST00000447654 ZNF622Q969S3 477 aaKnown RBP eCLIP22.69■■□□□ 1.22
HMGA1-205ENST00000447654 C1orf115Q9H7X2 142 aa22.69■■□□□ 1.22
HMGA1-205ENST00000447654 MIS18AQ9NYP9 233 aa22.69■■□□□ 1.22
HMGA1-205ENST00000447654 HDAC5Q9UQL6 1122 aa22.69■■□□□ 1.22
HMGA1-205ENST00000447654 PTPN14Q15678 1187 aa22.69■■□□□ 1.22
HMGA1-205ENST00000447654 ELF2Q15723 593 aa22.69■■□□□ 1.22
HMGA1-205ENST00000447654 ABTB2Q8N961 1025 aa22.69■■□□□ 1.22
HMGA1-205ENST00000447654 ZNF75DP51815 510 aa22.68■■□□□ 1.22
HMGA1-205ENST00000447654 OSBPL3Q9H4L5 887 aa22.68■■□□□ 1.22
HMGA1-205ENST00000447654 CNPY2Q9Y2B0 182 aa22.68■■□□□ 1.22
HMGA1-205ENST00000447654 KDRP35968 1356 aa22.68■■□□□ 1.22
HMGA1-205ENST00000447654 TUBB4AP04350 444 aa22.67■■□□□ 1.22
HMGA1-205ENST00000447654 API5Q9BZZ5 524 aaKnown RBP22.67■■□□□ 1.22
HMGA1-205ENST00000447654 CRB1P82279 1406 aa22.67■■□□□ 1.22
HMGA1-205ENST00000447654 IGSF1Q8N6C5 1336 aa22.67■■□□□ 1.22
HMGA1-205ENST00000447654 MYO1CO00159 1063 aa22.67■■□□□ 1.22
HMGA1-205ENST00000447654 GUCY2CP25092 1073 aa22.66■■□□□ 1.22
HMGA1-205ENST00000447654 HOXC9P31274 260 aa22.66■■□□□ 1.22
HMGA1-205ENST00000447654 LRMPQ12912 555 aa22.66■■□□□ 1.22
HMGA1-205ENST00000447654 ST7Q9NRC1 585 aa22.66■■□□□ 1.22
HMGA1-205ENST00000447654 PHF8Q9UPP1 1060 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms