RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 ARHGAP31Q2M1Z3 1444 aa14.13□□□□□ -0.15
MSH6-204ENST00000445503 GORABQ5T7V8 394 aa14.13□□□□□ -0.15
MSH6-204ENST00000445503 CLEC17AQ6ZS10 378 aa14.13□□□□□ -0.15
MSH6-204ENST00000445503 RBM8AQ9Y5S9 174 aaKnown RBP14.13□□□□□ -0.15
MSH6-204ENST00000445503 PDCP20941 246 aa14.12□□□□□ -0.15
MSH6-204ENST00000445503 SF3A1Q15459 793 aaKnown RBP14.12□□□□□ -0.15
MSH6-204ENST00000445503 MYO3AQ8NEV4 1616 aa14.12□□□□□ -0.15
MSH6-204ENST00000445503 CFAP74Q9C0B2 1584 aa14.12□□□□□ -0.15
MSH6-204ENST00000445503 ATP10DQ9P241 1426 aa14.12□□□□□ -0.15
MSH6-204ENST00000445503 PIP4K2AP48426 406 aaPredicted RBP14.12□□□□□ -0.15
MSH6-204ENST00000445503 MAP3K11Q16584 847 aa14.12□□□□□ -0.15
MSH6-204ENST00000445503 IBTKQ9P2D0 1353 aaPredicted RBP14.12□□□□□ -0.15
MSH6-204ENST00000445503 PLEKHG3A1L390 1219 aa14.12□□□□□ -0.15
MSH6-204ENST00000445503 KDM4AO75164 1064 aa14.12□□□□□ -0.15
MSH6-204ENST00000445503 HMGN5P82970 282 aaKnown RBP14.11□□□□□ -0.15
MSH6-204ENST00000445503 DBF4Q9UBU7 674 aaPredicted RBP14.11□□□□□ -0.15
MSH6-204ENST00000445503 CUL4AQ13619 759 aa14.11□□□□□ -0.15
MSH6-204ENST00000445503 KLHDC4Q8TBB5 520 aa14.11□□□□□ -0.15
MSH6-204ENST00000445503 LRRC2Q9BYS8 371 aa14.11□□□□□ -0.15
MSH6-204ENST00000445503 TTC21AQ8NDW8 1320 aa14.11□□□□□ -0.15
MSH6-204ENST00000445503 PTH1RQ03431 593 aa14.11□□□□□ -0.15
MSH6-204ENST00000445503 IL25Q9H293 177 aa14.11□□□□□ -0.15
MSH6-204ENST00000445503 PIK3C2BO00750 1634 aa14.1□□□□□ -0.15
MSH6-204ENST00000445503 TRHP20396 242 aaPredicted RBP14.1□□□□□ -0.15
MSH6-204ENST00000445503 ZC3H6P61129 1189 aaKnown RBP14.1□□□□□ -0.15
MSH6-204ENST00000445503 CBX1P83916 185 aa14.1□□□□□ -0.15
MSH6-204ENST00000445503 RUFY3Q7L099 469 aa14.1□□□□□ -0.15
MSH6-204ENST00000445503 FAM227BQ96M60 508 aa14.1□□□□□ -0.15
MSH6-204ENST00000445503 RAD50Q92878 1312 aa14.1□□□□□ -0.15
MSH6-204ENST00000445503 MAP3K5Q99683 1374 aa14.1□□□□□ -0.15
MSH6-204ENST00000445503 TTC5Q8N0Z6 440 aa14.1□□□□□ -0.15
MSH6-204ENST00000445503 FRMPD1Q5SYB0 1578 aa14.1□□□□□ -0.15
MSH6-204ENST00000445503 SSH3Q8TE77 659 aa14.1□□□□□ -0.15
MSH6-204ENST00000445503 SH2B1Q9NRF2 756 aaPredicted RBP14.1□□□□□ -0.15
MSH6-204ENST00000445503 KIF3AQ9Y496 699 aa14.1□□□□□ -0.15
MSH6-204ENST00000445503 NEURL4Q96JN8 1562 aa14.1□□□□□ -0.15
MSH6-204ENST00000445503 ARHGEF28Q8N1W1 1705 aaKnown RBP14.09□□□□□ -0.15
MSH6-204ENST00000445503 CPS1P31327 1500 aa14.09□□□□□ -0.15
MSH6-204ENST00000445503 NMIQ13287 307 aaPredicted RBP14.09□□□□□ -0.15
MSH6-204ENST00000445503 RAPGEF4Q8WZA2 1011 aa14.09□□□□□ -0.15
MSH6-204ENST00000445503 EVI5LQ96CN4 794 aa14.09□□□□□ -0.15
MSH6-204ENST00000445503 PHF8Q9UPP1 1060 aa14.09□□□□□ -0.15
MSH6-204ENST00000445503 DYNC1I1O14576 645 aa14.09□□□□□ -0.15
MSH6-204ENST00000445503 ZNF500O60304 480 aaPredicted RBP14.09□□□□□ -0.15
MSH6-204ENST00000445503 SLC39A6Q13433 755 aa14.09□□□□□ -0.15
MSH6-204ENST00000445503 ADCK5Q3MIX3 580 aa14.09□□□□□ -0.15
MSH6-204ENST00000445503 THEMISQ8N1K5 641 aaPredicted RBP14.09□□□□□ -0.15
MSH6-204ENST00000445503 SBNO1A3KN83 1393 aa14.09□□□□□ -0.15
MSH6-204ENST00000445503 GUCY1B3Q02153 619 aa14.09□□□□□ -0.15
MSH6-204ENST00000445503 FMNL2Q96PY5 1086 aa14.09□□□□□ -0.15
MSH6-204ENST00000445503 HIP1O00291 1037 aa14.08□□□□□ -0.15
MSH6-204ENST00000445503 TPD52L1Q16890 204 aaPredicted RBP14.08□□□□□ -0.15
MSH6-204ENST00000445503 LARGE1O95461 756 aa14.08□□□□□ -0.16
MSH6-204ENST00000445503 UVSSAQ2YD98 709 aa14.08□□□□□ -0.16
MSH6-204ENST00000445503 MTERF4Q7Z6M4 381 aaKnown RBP14.08□□□□□ -0.16
MSH6-204ENST00000445503 MYD88Q99836 296 aa14.08□□□□□ -0.16
MSH6-204ENST00000445503 DACT1Q9NYF0 836 aa14.08□□□□□ -0.16
MSH6-204ENST00000445503 STAP2Q9UGK3 403 aa14.08□□□□□ -0.16
MSH6-204ENST00000445503 NDUFB9Q9Y6M9 179 aa14.08□□□□□ -0.16
MSH6-204ENST00000445503 CPSF1Q10570 1443 aaKnown RBP14.08□□□□□ -0.16
MSH6-204ENST00000445503 VIRMAQ69YN4 1812 aaKnown RBP14.08□□□□□ -0.16
MSH6-204ENST00000445503 NPHP1O15259 732 aa14.08□□□□□ -0.16
MSH6-204ENST00000445503 GNL2Q13823 731 aaKnown RBP14.08□□□□□ -0.16
MSH6-204ENST00000445503 CREB3L3Q68CJ9 461 aa14.08□□□□□ -0.16
MSH6-204ENST00000445503 A2ML1A8K2U0 1454 aa14.07□□□□□ -0.16
MSH6-204ENST00000445503 KCNA6P17658 529 aa14.07□□□□□ -0.16
MSH6-204ENST00000445503 CCDC73Q6ZRK6 1079 aa14.07□□□□□ -0.16
MSH6-204ENST00000445503 FILIP1Q7Z7B0 1213 aa14.07□□□□□ -0.16
MSH6-204ENST00000445503 C16orf45Q96MC5 204 aaPredicted RBP14.07□□□□□ -0.16
MSH6-204ENST00000445503 LUZP1Q86V48 1076 aa14.07□□□□□ -0.16
MSH6-204ENST00000445503 EDC3Q96F86 508 aaKnown RBP14.07□□□□□ -0.16
MSH6-204ENST00000445503 ANKRD1Q15327 319 aa14.07□□□□□ -0.16
MSH6-204ENST00000445503 NBPF6Q5VWK0 638 aa14.07□□□□□ -0.16
MSH6-204ENST00000445503 NBPF4Q96M43 638 aa14.07□□□□□ -0.16
MSH6-204ENST00000445503 SDF4Q9BRK5 362 aa14.07□□□□□ -0.16
MSH6-204ENST00000445503 SPDYE4A6NLX3 237 aa14.06□□□□□ -0.16
MSH6-204ENST00000445503 ATP5J2-PTCD1G3V325 749 aa14.06□□□□□ -0.16
MSH6-204ENST00000445503 PTCD1O75127 700 aaKnown RBP14.06□□□□□ -0.16
MSH6-204ENST00000445503 USP32Q8NFA0 1604 aa14.06□□□□□ -0.16
MSH6-204ENST00000445503 TAF7LQ5H9L4 462 aa14.06□□□□□ -0.16
MSH6-204ENST00000445503 PDLIM2Q96JY6 352 aa14.06□□□□□ -0.16
MSH6-204ENST00000445503 LSG1Q9H089 658 aaKnown RBP14.06□□□□□ -0.16
MSH6-204ENST00000445503 ARHGEF10O15013 1369 aa14.06□□□□□ -0.16
MSH6-204ENST00000445503 CCT2P78371 535 aaKnown RBP14.05□□□□□ -0.16
MSH6-204ENST00000445503 PTGS1P23219 599 aa14.05□□□□□ -0.16
MSH6-204ENST00000445503 EIF4A1P60842 406 aaKnown RBP14.05□□□□□ -0.16
MSH6-204ENST00000445503 ME3Q16798 604 aa14.05□□□□□ -0.16
MSH6-204ENST00000445503 CCDC186Q7Z3E2 898 aa14.05□□□□□ -0.16
MSH6-204ENST00000445503 MAP2P11137 1827 aaKnown RBP14.05□□□□□ -0.16
MSH6-204ENST00000445503 ME1P48163 572 aa14.05□□□□□ -0.16
MSH6-204ENST00000445503 ANO6Q4KMQ2 910 aa14.05□□□□□ -0.16
MSH6-204ENST00000445503 RGS12O14924 1447 aa14.05□□□□□ -0.16
MSH6-204ENST00000445503 GRM8O00222 908 aa14.04□□□□□ -0.16
MSH6-204ENST00000445503 BICC1Q9H694 974 aaKnown RBP14.04□□□□□ -0.16
MSH6-204ENST00000445503 CCDC171Q6TFL3 1326 aa14.04□□□□□ -0.16
MSH6-204ENST00000445503 WASHC4Q2M389 1173 aa14.04□□□□□ -0.16
MSH6-204ENST00000445503 VPS53Q5VIR6 699 aa14.04□□□□□ -0.16
MSH6-204ENST00000445503 KSR2Q6VAB6 950 aa14.04□□□□□ -0.16
MSH6-204ENST00000445503 DDX46Q7L014 1031 aaKnown RBP14.04□□□□□ -0.16
MSH6-204ENST00000445503 CDC37L1Q7L3B6 337 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms