RNA–Protein interactions for RNA: ENST00000442708.5

USP39-205, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-205ENST00000442708 TM4SF1P30408 202 aa20.67■□□□□ 0.9
USP39-205ENST00000442708 DDR1Q08345 913 aa20.67■□□□□ 0.9
USP39-205ENST00000442708 CCDC30Q5VVM6 783 aa20.67■□□□□ 0.9
USP39-205ENST00000442708 NPM2Q86SE8 214 aaKnown RBP20.67■□□□□ 0.9
USP39-205ENST00000442708 AIMP1Q12904 312 aaKnown RBP20.66■□□□□ 0.9
USP39-205ENST00000442708 NFIXQ14938 502 aa20.66■□□□□ 0.9
USP39-205ENST00000442708 TBC1D9BQ66K14 1250 aa20.66■□□□□ 0.9
USP39-205ENST00000442708 ZBTB3Q9H5J0 574 aa20.66■□□□□ 0.9
USP39-205ENST00000442708 PHAXQ9H814 394 aaKnown RBP20.66■□□□□ 0.9
USP39-205ENST00000442708 MAP3K15Q6ZN16 1313 aa20.66■□□□□ 0.9
USP39-205ENST00000442708 AFDNP55196 1824 aaKnown RBP20.66■□□□□ 0.9
USP39-205ENST00000442708 POLD1P28340 1107 aa20.65■□□□□ 0.9
USP39-205ENST00000442708 HYPKQ9NX55 129 aa20.65■□□□□ 0.9
USP39-205ENST00000442708 CACNA1FO60840 1977 aa20.65■□□□□ 0.9
USP39-205ENST00000442708 BICDL1Q6ZP65 573 aa20.64■□□□□ 0.89
USP39-205ENST00000442708 ERVV-1B6SEH8 477 aa20.63■□□□□ 0.89
USP39-205ENST00000442708 POLRMTO00411 1230 aaKnown RBP20.63■□□□□ 0.89
USP39-205ENST00000442708 KIF6Q6ZMV9 814 aa20.63■□□□□ 0.89
USP39-205ENST00000442708 G2E3Q7L622 706 aa20.63■□□□□ 0.89
USP39-205ENST00000442708 ARFGEF2Q9Y6D5 1785 aa20.63■□□□□ 0.89
USP39-205ENST00000442708 NRXN2Q9P2S2 1712 aa20.63■□□□□ 0.89
USP39-205ENST00000442708 SLC4A2P04920 1241 aa20.62■□□□□ 0.89
USP39-205ENST00000442708 CLEC4GQ6UXB4 293 aa20.62■□□□□ 0.89
USP39-205ENST00000442708 ANKRD36CQ5JPF3 1778 aa20.62■□□□□ 0.89
USP39-205ENST00000442708 STK31Q9BXU1 1019 aa20.61■□□□□ 0.89
USP39-205ENST00000442708 PPP1R1BQ9UD71 204 aaPredicted RBP20.61■□□□□ 0.89
USP39-205ENST00000442708 KIF13BQ9NQT8 1826 aa20.6■□□□□ 0.89
USP39-205ENST00000442708 RGL2O15211 777 aa20.6■□□□□ 0.89
USP39-205ENST00000442708 GIGYF2Q6Y7W6 1299 aaKnown RBP20.6■□□□□ 0.89
USP39-205ENST00000442708 CHMP4AQ9BY43 222 aa20.6■□□□□ 0.89
USP39-205ENST00000442708 PARP3Q9Y6F1 533 aa20.6■□□□□ 0.89
USP39-205ENST00000442708 FHDC1Q9C0D6 1143 aaPredicted RBP20.59■□□□□ 0.89
USP39-205ENST00000442708 ZNF652Q9Y2D9 606 aa20.59■□□□□ 0.89
USP39-205ENST00000442708 ATP10DQ9P241 1426 aa20.59■□□□□ 0.89
USP39-205ENST00000442708 SERPINB2P05120 415 aa20.58■□□□□ 0.89
USP39-205ENST00000442708 ANKRD13DQ6ZTN6 518 aa20.58■□□□□ 0.89
USP39-205ENST00000442708 PLBD2Q8NHP8 589 aa20.58■□□□□ 0.89
USP39-205ENST00000442708 UBN2Q6ZU65 1347 aa20.57■□□□□ 0.88
USP39-205ENST00000442708 ZNF34Q8IZ26 560 aa20.57■□□□□ 0.88
USP39-205ENST00000442708 SETDB2Q96T68 719 aa20.57■□□□□ 0.88
USP39-205ENST00000442708 KIAA1551Q9HCM1 1747 aa20.57■□□□□ 0.88
USP39-205ENST00000442708 NIP7Q9Y221 180 aaKnown RBP eCLIP20.57■□□□□ 0.88
USP39-205ENST00000442708 ADCY9O60503 1353 aa20.57■□□□□ 0.88
USP39-205ENST00000442708 CARMIL3Q8ND23 1372 aa20.57■□□□□ 0.88
USP39-205ENST00000442708 C10orf71Q711Q0 1435 aa20.56■□□□□ 0.88
USP39-205ENST00000442708 GPTP24298 496 aa20.56■□□□□ 0.88
USP39-205ENST00000442708 KLHL34Q8N239 644 aa20.56■□□□□ 0.88
USP39-205ENST00000442708 SSH1Q8WYL5 1049 aa20.56■□□□□ 0.88
USP39-205ENST00000442708 ANKRD31Q8N7Z5 1873 aa20.56■□□□□ 0.88
USP39-205ENST00000442708 FLIIQ13045 1269 aa20.55■□□□□ 0.88
USP39-205ENST00000442708 MRPL50Q8N5N7 158 aaKnown RBP20.55■□□□□ 0.88
USP39-205ENST00000442708 YTHDC1Q96MU7 727 aaKnown RBP20.55■□□□□ 0.88
USP39-205ENST00000442708 BCL2L13Q9BXK5 485 aa20.55■□□□□ 0.88
USP39-205ENST00000442708 TCIRG1Q13488 830 aa20.54■□□□□ 0.88
USP39-205ENST00000442708 CCDC24Q8N4L8 307 aa20.54■□□□□ 0.88
USP39-205ENST00000442708 NLGN2Q8NFZ4 835 aa20.54■□□□□ 0.88
USP39-205ENST00000442708 SYT17Q9BSW7 474 aa20.54■□□□□ 0.88
USP39-205ENST00000442708 N4BP2Q86UW6 1770 aaPredicted RBP20.54■□□□□ 0.88
USP39-205ENST00000442708 PI4KAP2A4QPH2 592 aa20.53■□□□□ 0.88
USP39-205ENST00000442708 FAM177BA6PVY3 158 aa20.53■□□□□ 0.88
USP39-205ENST00000442708 SUSD4Q5VX71 490 aa20.53■□□□□ 0.88
USP39-205ENST00000442708 PRR5LQ6MZQ0 368 aa20.53■□□□□ 0.88
USP39-205ENST00000442708 RIC3Q7Z5B4 369 aa20.53■□□□□ 0.88
USP39-205ENST00000442708 PI4KAP1Q8N8J0 262 aa20.53■□□□□ 0.88
USP39-205ENST00000442708 ZNF428Q96B54 188 aa20.53■□□□□ 0.88
USP39-205ENST00000442708 CT47B1P0C2W7 299 aaPredicted RBP20.52■□□□□ 0.88
USP39-205ENST00000442708 YY1P25490 414 aa20.52■□□□□ 0.88
USP39-205ENST00000442708 KSR2Q6VAB6 950 aa20.52■□□□□ 0.88
USP39-205ENST00000442708 MAP3K2Q9Y2U5 619 aa20.52■□□□□ 0.88
USP39-205ENST00000442708 CD2APQ9Y5K6 639 aa20.52■□□□□ 0.88
USP39-205ENST00000442708 ATP5J2-PTCD1G3V325 749 aa20.51■□□□□ 0.87
USP39-205ENST00000442708 RARSP54136 660 aaKnown RBP20.51■□□□□ 0.87
USP39-205ENST00000442708 ALDH1L2Q3SY69 923 aa20.51■□□□□ 0.87
USP39-205ENST00000442708 NBPF5PQ86XG9 351 aaPredicted RBP20.51■□□□□ 0.87
USP39-205ENST00000442708 ISCA1Q9BUE6 129 aa20.51■□□□□ 0.87
USP39-205ENST00000442708 DDX58O95786 925 aaKnown RBP20.5■□□□□ 0.87
USP39-205ENST00000442708 FKBP5Q13451 457 aaPredicted RBP20.5■□□□□ 0.87
USP39-205ENST00000442708 NLRP10Q86W26 655 aa20.5■□□□□ 0.87
USP39-205ENST00000442708 MYD88Q99836 296 aa20.5■□□□□ 0.87
USP39-205ENST00000442708 METTL22Q9BUU2 404 aaPredicted RBP20.5■□□□□ 0.87
USP39-205ENST00000442708 PXDNLA1KZ92 1463 aa20.5■□□□□ 0.87
USP39-205ENST00000442708 NTSR2O95665 410 aa20.49■□□□□ 0.87
USP39-205ENST00000442708 HSP90AB3PQ58FF7 597 aa20.49■□□□□ 0.87
USP39-205ENST00000442708 CNBD1Q8NA66 436 aa20.49■□□□□ 0.87
USP39-205ENST00000442708 TNRC6CQ9HCJ0 1690 aaKnown RBP20.48■□□□□ 0.87
USP39-205ENST00000442708 ABCC12Q96J65 1359 aa20.48■□□□□ 0.87
USP39-205ENST00000442708 F6X3S4 739 aa20.48■□□□□ 0.87
USP39-205ENST00000442708 NUTM1Q86Y26 1132 aa20.48■□□□□ 0.87
USP39-205ENST00000442708 SMC4Q9NTJ3 1288 aa20.48■□□□□ 0.87
USP39-205ENST00000442708 IBTKQ9P2D0 1353 aaPredicted RBP20.47■□□□□ 0.87
USP39-205ENST00000442708 COL11A2P13942 1736 aaPredicted RBP20.47■□□□□ 0.87
USP39-205ENST00000442708 IGKV5-2P06315 115 aa20.47■□□□□ 0.87
USP39-205ENST00000442708 ERFEQ4G0M1 354 aa20.47■□□□□ 0.87
USP39-205ENST00000442708 PARP10Q53GL7 1025 aa20.47■□□□□ 0.87
USP39-205ENST00000442708 SYNE4Q8N205 404 aa20.47■□□□□ 0.87
USP39-205ENST00000442708 BRCA1P38398 1863 aaKnown RBP20.47■□□□□ 0.87
USP39-205ENST00000442708 A0A0G2JLW4 131 aa20.46■□□□□ 0.87
USP39-205ENST00000442708 TRIM28Q13263 835 aaKnown RBP20.46■□□□□ 0.87
USP39-205ENST00000442708 TPTE2Q6XPS3 522 aa20.46■□□□□ 0.87
USP39-205ENST00000442708 DNAAF4Q8WXU2 420 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms