RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 CWC25Q9NXE8 425 aaPredicted RBP7.41□□□□□ -1.22
VPS50-205ENST00000441602 SLIT2O94813 1529 aa7.41□□□□□ -1.22
VPS50-205ENST00000441602 C8orf37Q96NL8 207 aa7.4□□□□□ -1.22
VPS50-205ENST00000441602 ERC2O15083 957 aa7.4□□□□□ -1.22
VPS50-205ENST00000441602 NBPF7P0C2Y1 421 aaPredicted RBP7.4□□□□□ -1.22
VPS50-205ENST00000441602 CWF19L2Q2TBE0 894 aaKnown RBP7.4□□□□□ -1.22
VPS50-205ENST00000441602 OSBPL3Q9H4L5 887 aa7.4□□□□□ -1.22
VPS50-205ENST00000441602 PNMA6EA0A0J9YXQ4 647 aa7.4□□□□□ -1.23
VPS50-205ENST00000441602 SMARCA5O60264 1052 aaPredicted RBP7.4□□□□□ -1.23
VPS50-205ENST00000441602 MX1P20591 662 aa7.4□□□□□ -1.23
VPS50-205ENST00000441602 CCDC191Q8NCU4 936 aa7.4□□□□□ -1.23
VPS50-205ENST00000441602 RHPN1Q8TCX5 695 aa7.4□□□□□ -1.23
VPS50-205ENST00000441602 ATG3Q9NT62 314 aa7.4□□□□□ -1.23
VPS50-205ENST00000441602 BCL9O00512 1426 aa7.4□□□□□ -1.23
VPS50-205ENST00000441602 DNAJC10Q8IXB1 793 aa7.39□□□□□ -1.23
VPS50-205ENST00000441602 C22orf23Q9BZE7 217 aa7.39□□□□□ -1.23
VPS50-205ENST00000441602 ZNF330Q9Y3S2 320 aaPredicted RBP7.39□□□□□ -1.23
VPS50-205ENST00000441602 COL15A1P39059 1388 aa7.39□□□□□ -1.23
VPS50-205ENST00000441602 KCPQ6ZWJ8 1503 aa7.39□□□□□ -1.23
VPS50-205ENST00000441602 C5P01031 1676 aa7.39□□□□□ -1.23
VPS50-205ENST00000441602 PAPPAQ13219 1627 aa7.39□□□□□ -1.23
VPS50-205ENST00000441602 A0A087WZG4 1122 aa7.39□□□□□ -1.23
VPS50-205ENST00000441602 REC8O95072 547 aa7.39□□□□□ -1.23
VPS50-205ENST00000441602 A1BGP04217 495 aa7.39□□□□□ -1.23
VPS50-205ENST00000441602 IFIT2P09913 472 aaKnown RBP7.39□□□□□ -1.23
VPS50-205ENST00000441602 HSP90B1P14625 803 aaKnown RBP7.39□□□□□ -1.23
VPS50-205ENST00000441602 PDE1AP54750 535 aa7.39□□□□□ -1.23
VPS50-205ENST00000441602 TBC1D32Q96NH3 1257 aa7.39□□□□□ -1.23
VPS50-205ENST00000441602 ARXQ96QS3 562 aa7.39□□□□□ -1.23
VPS50-205ENST00000441602 PRIM1P49642 420 aaKnown RBP7.39□□□□□ -1.23
VPS50-205ENST00000441602 SUCLG2Q96I99 432 aa7.39□□□□□ -1.23
VPS50-205ENST00000441602 ASAP1Q9ULH1 1129 aa7.39□□□□□ -1.23
VPS50-205ENST00000441602 NRAPQ86VF7 1730 aa7.38□□□□□ -1.23
VPS50-205ENST00000441602 IGKV5-2P06315 115 aa7.38□□□□□ -1.23
VPS50-205ENST00000441602 MCCP23508 829 aa7.38□□□□□ -1.23
VPS50-205ENST00000441602 HMGB2P26583 209 aaKnown RBP7.38□□□□□ -1.23
VPS50-205ENST00000441602 STAP2Q9UGK3 403 aa7.38□□□□□ -1.23
VPS50-205ENST00000441602 TTC41PQ6P2S7 1318 aa7.38□□□□□ -1.23
VPS50-205ENST00000441602 USP21Q9UK80 565 aa7.38□□□□□ -1.23
VPS50-205ENST00000441602 UBR2Q8IWV8 1755 aa7.38□□□□□ -1.23
VPS50-205ENST00000441602 SHANK3Q9BYB0 1731 aa7.38□□□□□ -1.23
VPS50-205ENST00000441602 TRIM6-TRIM34B2RNG4 842 aa7.37□□□□□ -1.23
VPS50-205ENST00000441602 NBPF26B4DH59 902 aa7.37□□□□□ -1.23
VPS50-205ENST00000441602 NBPF14Q5TI25 921 aa7.37□□□□□ -1.23
VPS50-205ENST00000441602 NBPF10Q6P3W6 841 aaKnown RBP7.37□□□□□ -1.23
VPS50-205ENST00000441602 UBE3BQ7Z3V4 1068 aa7.37□□□□□ -1.23
VPS50-205ENST00000441602 NBPF15Q8N660 670 aa7.37□□□□□ -1.23
VPS50-205ENST00000441602 ZBTB3Q9H5J0 574 aa7.37□□□□□ -1.23
VPS50-205ENST00000441602 BICC1Q9H694 974 aaKnown RBP7.37□□□□□ -1.23
VPS50-205ENST00000441602 WNK3Q9BYP7 1800 aa7.37□□□□□ -1.23
VPS50-205ENST00000441602 GLRX3O76003 335 aaKnown RBP7.37□□□□□ -1.23
VPS50-205ENST00000441602 IL6STP40189 918 aaPredicted RBP7.37□□□□□ -1.23
VPS50-205ENST00000441602 TCIRG1Q13488 830 aa7.37□□□□□ -1.23
VPS50-205ENST00000441602 CNTROBQ8N137 903 aa7.37□□□□□ -1.23
VPS50-205ENST00000441602 FNBP4Q8N3X1 1017 aaPredicted RBP7.37□□□□□ -1.23
VPS50-205ENST00000441602 MAP3K15Q6ZN16 1313 aa7.37□□□□□ -1.23
VPS50-205ENST00000441602 ATP5J2-PTCD1G3V325 749 aa7.37□□□□□ -1.23
VPS50-205ENST00000441602 TRIM28Q13263 835 aaKnown RBP7.37□□□□□ -1.23
VPS50-205ENST00000441602 TBC1D9Q6ZT07 1266 aa7.37□□□□□ -1.23
VPS50-205ENST00000441602 TTLL7Q6ZT98 887 aa7.37□□□□□ -1.23
VPS50-205ENST00000441602 LRP10Q7Z4F1 713 aa7.37□□□□□ -1.23
VPS50-205ENST00000441602 HSCBQ8IWL3 235 aa7.37□□□□□ -1.23
VPS50-205ENST00000441602 CHMP3Q9Y3E7 222 aa7.37□□□□□ -1.23
VPS50-205ENST00000441602 PIP4K2AP48426 406 aaPredicted RBP7.36□□□□□ -1.23
VPS50-205ENST00000441602 FAM98CQ17RN3 349 aaKnown RBP7.36□□□□□ -1.23
VPS50-205ENST00000441602 C16orf71Q8IYS4 520 aaPredicted RBP7.36□□□□□ -1.23
VPS50-205ENST00000441602 RUFY2Q8WXA3 655 aa7.36□□□□□ -1.23
VPS50-205ENST00000441602 IL1RAPL2Q9NP60 686 aa7.36□□□□□ -1.23
VPS50-205ENST00000441602 CCDC87Q9NVE4 849 aa7.36□□□□□ -1.23
VPS50-205ENST00000441602 ERVV-1B6SEH8 477 aa7.36□□□□□ -1.23
VPS50-205ENST00000441602 H7C1W4 665 aa7.36□□□□□ -1.23
VPS50-205ENST00000441602 HIP1O00291 1037 aa7.36□□□□□ -1.23
VPS50-205ENST00000441602 SDSP20132 328 aa7.36□□□□□ -1.23
VPS50-205ENST00000441602 IL27Q8NEV9 243 aa7.36□□□□□ -1.23
VPS50-205ENST00000441602 COPRSQ9NQ92 184 aa7.36□□□□□ -1.23
VPS50-205ENST00000441602 CYP19A1P11511 503 aaPredicted RBP7.36□□□□□ -1.23
VPS50-205ENST00000441602 TAF7LQ5H9L4 462 aa7.36□□□□□ -1.23
VPS50-205ENST00000441602 MARCH10Q8NA82 808 aaPredicted RBP7.36□□□□□ -1.23
VPS50-205ENST00000441602 RILPL2Q969X0 211 aa7.36□□□□□ -1.23
VPS50-205ENST00000441602 ISCA1Q9BUE6 129 aa7.36□□□□□ -1.23
VPS50-205ENST00000441602 ECHDC1Q9NTX5 307 aa7.36□□□□□ -1.23
VPS50-205ENST00000441602 ZNF652Q9Y2D9 606 aa7.36□□□□□ -1.23
VPS50-205ENST00000441602 PCCAP05165 728 aaPredicted RBP7.35□□□□□ -1.23
VPS50-205ENST00000441602 GSPT1P15170 499 aaKnown RBP7.35□□□□□ -1.23
VPS50-205ENST00000441602 ATP6V1AP38606 617 aa7.35□□□□□ -1.23
VPS50-205ENST00000441602 RABL6Q3YEC7 729 aaPredicted RBP7.35□□□□□ -1.23
VPS50-205ENST00000441602 GIGYF2Q6Y7W6 1299 aaKnown RBP7.35□□□□□ -1.23
VPS50-205ENST00000441602 ACSBG1Q96GR2 724 aa7.35□□□□□ -1.23
VPS50-205ENST00000441602 TRPC5Q9UL62 973 aaPredicted RBP7.35□□□□□ -1.23
VPS50-205ENST00000441602 TOGARAM1Q9Y4F4 1720 aa7.35□□□□□ -1.23
VPS50-205ENST00000441602 AACSQ86V21 672 aa7.35□□□□□ -1.23
VPS50-205ENST00000441602 DZIP3Q86Y13 1208 aaKnown RBP7.35□□□□□ -1.23
VPS50-205ENST00000441602 OTUD7AQ8TE49 926 aaPredicted RBP7.35□□□□□ -1.23
VPS50-205ENST00000441602 FBXO3Q9UK99 471 aa7.35□□□□□ -1.23
VPS50-205ENST00000441602 PALLDQ8WX93 1383 aa7.35□□□□□ -1.23
VPS50-205ENST00000441602 LOC102724428A0A0B4J2F2 783 aa7.35□□□□□ -1.23
VPS50-205ENST00000441602 EPB41L2O43491 1005 aaKnown RBP7.35□□□□□ -1.23
VPS50-205ENST00000441602 SEC24BO95487 1268 aa7.35□□□□□ -1.23
VPS50-205ENST00000441602 RBM25P49756 843 aaKnown RBP7.35□□□□□ -1.23
VPS50-205ENST00000441602 SIK1P57059 783 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms