RNA–Protein interactions for RNA: ENST00000433297.2

HMGCS1-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGCS1, Length 3,466 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-202ENST00000433297 STAP2Q9UGK3 403 aa13.68□□□□□ -0.22
HMGCS1-202ENST00000433297 SSH2Q76I76 1423 aa13.68□□□□□ -0.22
HMGCS1-202ENST00000433297 NUTM2FA1L443 756 aa13.68□□□□□ -0.22
HMGCS1-202ENST00000433297 SKILP12757 684 aa13.68□□□□□ -0.22
HMGCS1-202ENST00000433297 EIF4A2Q14240 407 aaKnown RBP13.68□□□□□ -0.22
HMGCS1-202ENST00000433297 FBXO38Q6PIJ6 1188 aa13.68□□□□□ -0.22
HMGCS1-202ENST00000433297 KIAA0232Q92628 1395 aa13.68□□□□□ -0.22
HMGCS1-202ENST00000433297 A0A087WWV3 80 aa13.67□□□□□ -0.22
HMGCS1-202ENST00000433297 PTH1RQ03431 593 aa13.67□□□□□ -0.22
HMGCS1-202ENST00000433297 GTF3C6Q969F1 213 aa13.67□□□□□ -0.22
HMGCS1-202ENST00000433297 ARHGEF28Q8N1W1 1705 aaKnown RBP13.67□□□□□ -0.22
HMGCS1-202ENST00000433297 PPLO60437 1756 aa13.67□□□□□ -0.22
HMGCS1-202ENST00000433297 NR1I2O75469 434 aa13.67□□□□□ -0.22
HMGCS1-202ENST00000433297 SYCP1Q15431 976 aa13.67□□□□□ -0.22
HMGCS1-202ENST00000433297 USP16Q9Y5T5 823 aa13.67□□□□□ -0.22
HMGCS1-202ENST00000433297 PPP1R42Q7Z4L9 355 aa13.66□□□□□ -0.22
HMGCS1-202ENST00000433297 BECN2A8MW95 431 aa13.66□□□□□ -0.22
HMGCS1-202ENST00000433297 PLA2G4DQ86XP0 818 aa13.66□□□□□ -0.22
HMGCS1-202ENST00000433297 LRRC8AQ8IWT6 810 aa13.66□□□□□ -0.22
HMGCS1-202ENST00000433297 SRGAP3O43295 1099 aa13.66□□□□□ -0.22
HMGCS1-202ENST00000433297 FOSBP53539 338 aa13.66□□□□□ -0.22
HMGCS1-202ENST00000433297 HSP90AB2PQ58FF8 381 aa13.66□□□□□ -0.22
HMGCS1-202ENST00000433297 GORABQ5T7V8 394 aa13.66□□□□□ -0.22
HMGCS1-202ENST00000433297 RHPN1Q8TCX5 695 aa13.66□□□□□ -0.22
HMGCS1-202ENST00000433297 DDX11Q96FC9 970 aa13.65□□□□□ -0.22
HMGCS1-202ENST00000433297 TPCN1Q9ULQ1 816 aa13.65□□□□□ -0.22
HMGCS1-202ENST00000433297 RAB11FIP3O75154 756 aa13.65□□□□□ -0.23
HMGCS1-202ENST00000433297 ZKSCAN1P17029 563 aaPredicted RBP13.65□□□□□ -0.23
HMGCS1-202ENST00000433297 RBM6P78332 1123 aaKnown RBP13.65□□□□□ -0.23
HMGCS1-202ENST00000433297 ZSCAN31Q96LW9 406 aaPredicted RBP13.65□□□□□ -0.23
HMGCS1-202ENST00000433297 NOL10Q9BSC4 688 aaKnown RBP13.65□□□□□ -0.23
HMGCS1-202ENST00000433297 CHMP4AQ9BY43 222 aa13.65□□□□□ -0.23
HMGCS1-202ENST00000433297 CPSF1Q10570 1443 aaKnown RBP13.64□□□□□ -0.23
HMGCS1-202ENST00000433297 ERCC6LQ2NKX8 1250 aa13.64□□□□□ -0.23
HMGCS1-202ENST00000433297 PI4K2BQ8TCG2 481 aa13.64□□□□□ -0.23
HMGCS1-202ENST00000433297 SH2B1Q9NRF2 756 aaPredicted RBP13.64□□□□□ -0.23
HMGCS1-202ENST00000433297 CCDC69A6NI79 296 aa13.63□□□□□ -0.23
HMGCS1-202ENST00000433297 POLR3GO15318 223 aaPredicted RBP13.63□□□□□ -0.23
HMGCS1-202ENST00000433297 ST3GAL1Q11201 340 aa13.63□□□□□ -0.23
HMGCS1-202ENST00000433297 VPS53Q5VIR6 699 aa13.63□□□□□ -0.23
HMGCS1-202ENST00000433297 LARP1Q6PKG0 1096 aaKnown RBP13.63□□□□□ -0.23
HMGCS1-202ENST00000433297 USP44Q9H0E7 712 aa13.63□□□□□ -0.23
HMGCS1-202ENST00000433297 CALCOCO1Q9P1Z2 691 aa13.63□□□□□ -0.23
HMGCS1-202ENST00000433297 COL9A3Q14050 684 aaPredicted RBP13.63□□□□□ -0.23
HMGCS1-202ENST00000433297 ERCC4Q92889 916 aaPredicted RBP13.63□□□□□ -0.23
HMGCS1-202ENST00000433297 SCAND2PQ9GZW5 306 aaPredicted RBP13.63□□□□□ -0.23
HMGCS1-202ENST00000433297 DDX19AQ9NUU7 478 aaKnown RBP13.63□□□□□ -0.23
HMGCS1-202ENST00000433297 SOS1Q07889 1333 aaPredicted RBP13.63□□□□□ -0.23
HMGCS1-202ENST00000433297 SLU7O95391 586 aaKnown RBP13.63□□□□□ -0.23
HMGCS1-202ENST00000433297 RAPGEF3O95398 923 aa13.63□□□□□ -0.23
HMGCS1-202ENST00000433297 TDRD7Q8NHU6 1098 aaKnown RBP13.63□□□□□ -0.23
HMGCS1-202ENST00000433297 LEO1Q8WVC0 666 aaPredicted RBP13.63□□□□□ -0.23
HMGCS1-202ENST00000433297 MAP2P11137 1827 aaKnown RBP13.62□□□□□ -0.23
HMGCS1-202ENST00000433297 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.62□□□□□ -0.23
HMGCS1-202ENST00000433297 CLSTN2Q9H4D0 955 aa13.62□□□□□ -0.23
HMGCS1-202ENST00000433297 PTPRMP28827 1452 aa13.62□□□□□ -0.23
HMGCS1-202ENST00000433297 MTHFSDQ2M296 383 aaKnown RBP13.62□□□□□ -0.23
HMGCS1-202ENST00000433297 CCDC30Q5VVM6 783 aa13.62□□□□□ -0.23
HMGCS1-202ENST00000433297 RUFY2Q8WXA3 655 aa13.62□□□□□ -0.23
HMGCS1-202ENST00000433297 ERO1AQ96HE7 468 aa13.62□□□□□ -0.23
HMGCS1-202ENST00000433297 CCDC171Q6TFL3 1326 aa13.62□□□□□ -0.23
HMGCS1-202ENST00000433297 POGZQ7Z3K3 1410 aa13.62□□□□□ -0.23
HMGCS1-202ENST00000433297 FBXO31Q5XUX0 539 aaPredicted RBP13.62□□□□□ -0.23
HMGCS1-202ENST00000433297 EIF2S2P20042 333 aaKnown RBP13.61□□□□□ -0.23
HMGCS1-202ENST00000433297 C11orf57Q6ZUT1 292 aaPredicted RBP13.61□□□□□ -0.23
HMGCS1-202ENST00000433297 NUDT16Q96DE0 195 aaKnown RBP13.61□□□□□ -0.23
HMGCS1-202ENST00000433297 TRIM34Q9BYJ4 488 aa13.61□□□□□ -0.23
HMGCS1-202ENST00000433297 NPHP3Q7Z494 1330 aa13.61□□□□□ -0.23
HMGCS1-202ENST00000433297 PDCP20941 246 aa13.61□□□□□ -0.23
HMGCS1-202ENST00000433297 TXNDC2Q86VQ3 553 aa13.61□□□□□ -0.23
HMGCS1-202ENST00000433297 KIF1BPQ96EK5 621 aa13.61□□□□□ -0.23
HMGCS1-202ENST00000433297 PPP6R1Q9UPN7 881 aa13.61□□□□□ -0.23
HMGCS1-202ENST00000433297 IL17RAQ96F46 866 aa13.6□□□□□ -0.23
HMGCS1-202ENST00000433297 PHAXQ9H814 394 aaKnown RBP13.6□□□□□ -0.23
HMGCS1-202ENST00000433297 ZSWIM6Q9HCJ5 1215 aa13.6□□□□□ -0.23
HMGCS1-202ENST00000433297 CDC42BPGQ6DT37 1551 aa13.6□□□□□ -0.23
HMGCS1-202ENST00000433297 H3BQV1 296 aa13.6□□□□□ -0.23
HMGCS1-202ENST00000433297 PPFIA3O75145 1194 aa13.6□□□□□ -0.23
HMGCS1-202ENST00000433297 HNRNPH2P55795 449 aaKnown RBP13.6□□□□□ -0.23
HMGCS1-202ENST00000433297 IFFO2Q5TF58 517 aa13.6□□□□□ -0.23
HMGCS1-202ENST00000433297 PGBD1Q96JS3 809 aa13.6□□□□□ -0.23
HMGCS1-202ENST00000433297 SLC52A1Q9NWF4 448 aa13.6□□□□□ -0.23
HMGCS1-202ENST00000433297 RBM8AQ9Y5S9 174 aaKnown RBP13.6□□□□□ -0.23
HMGCS1-202ENST00000433297 BMS1Q14692 1282 aaKnown RBP13.6□□□□□ -0.23
HMGCS1-202ENST00000433297 SYT10Q6XYQ8 523 aa13.6□□□□□ -0.23
HMGCS1-202ENST00000433297 ZNF446Q9NWS9 450 aa13.6□□□□□ -0.23
HMGCS1-202ENST00000433297 HTATSF1O43719 755 aaKnown RBP13.59□□□□□ -0.23
HMGCS1-202ENST00000433297 HOMER1Q86YM7 354 aa13.59□□□□□ -0.23
HMGCS1-202ENST00000433297 LRRN4CLQ8ND94 238 aa13.59□□□□□ -0.23
HMGCS1-202ENST00000433297 IPO4Q8TEX9 1081 aaKnown RBP13.59□□□□□ -0.23
HMGCS1-202ENST00000433297 ZBTB9Q96C00 473 aa13.59□□□□□ -0.23
HMGCS1-202ENST00000433297 DNAJC2Q99543 621 aaKnown RBP13.59□□□□□ -0.23
HMGCS1-202ENST00000433297 NEXMIFQ5QGS0 1516 aa13.59□□□□□ -0.23
HMGCS1-202ENST00000433297 WASLO00401 505 aaPredicted RBP13.59□□□□□ -0.23
HMGCS1-202ENST00000433297 EPB41L2O43491 1005 aaKnown RBP13.59□□□□□ -0.23
HMGCS1-202ENST00000433297 NBPF7P0C2Y1 421 aaPredicted RBP13.59□□□□□ -0.23
HMGCS1-202ENST00000433297 SNW1Q13573 536 aaKnown RBP13.59□□□□□ -0.23
HMGCS1-202ENST00000433297 CCAR2Q8N163 923 aaKnown RBP13.59□□□□□ -0.23
HMGCS1-202ENST00000433297 SSH3Q8TE77 659 aa13.59□□□□□ -0.23
HMGCS1-202ENST00000433297 FMNL2Q96PY5 1086 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms