RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 NPHP4O75161 1426 aaPredicted RBP8.72□□□□□ -1.01
COL28A1-202ENST00000430711 PI4KAP2A4QPH2 592 aa8.72□□□□□ -1.01
COL28A1-202ENST00000430711 SRGAP3O43295 1099 aa8.72□□□□□ -1.01
COL28A1-202ENST00000430711 AK2P54819 239 aa8.72□□□□□ -1.01
COL28A1-202ENST00000430711 ZNF772Q68DY9 489 aaPredicted RBP8.72□□□□□ -1.01
COL28A1-202ENST00000430711 PI4KAP1Q8N8J0 262 aa8.72□□□□□ -1.01
COL28A1-202ENST00000430711 SSH3Q8TE77 659 aa8.72□□□□□ -1.01
COL28A1-202ENST00000430711 TCEANC2Q96MN5 208 aa8.72□□□□□ -1.01
COL28A1-202ENST00000430711 LSG1Q9H089 658 aaKnown RBP8.72□□□□□ -1.01
COL28A1-202ENST00000430711 CRYBG1Q9Y4K1 1723 aa8.71□□□□□ -1.01
COL28A1-202ENST00000430711 FAM177BA6PVY3 158 aa8.71□□□□□ -1.01
COL28A1-202ENST00000430711 UBTFL1P0CB47 393 aaPredicted RBP8.71□□□□□ -1.01
COL28A1-202ENST00000430711 HSPA4P34932 840 aa8.71□□□□□ -1.01
COL28A1-202ENST00000430711 TAF7Q15545 349 aaPredicted RBP8.71□□□□□ -1.01
COL28A1-202ENST00000430711 CWF19L2Q2TBE0 894 aaKnown RBP8.71□□□□□ -1.01
COL28A1-202ENST00000430711 CCDC30Q5VVM6 783 aa8.71□□□□□ -1.01
COL28A1-202ENST00000430711 FAM173BQ6P4H8 233 aa8.71□□□□□ -1.01
COL28A1-202ENST00000430711 MPRIPQ6WCQ1 1025 aa8.71□□□□□ -1.01
COL28A1-202ENST00000430711 RHPN1Q8TCX5 695 aa8.71□□□□□ -1.01
COL28A1-202ENST00000430711 TTC14Q96N46 770 aa8.71□□□□□ -1.01
COL28A1-202ENST00000430711 CWC22Q9HCG8 908 aaKnown RBP8.71□□□□□ -1.01
COL28A1-202ENST00000430711 TLR7Q9NYK1 1049 aaKnown RBP8.71□□□□□ -1.01
COL28A1-202ENST00000430711 OFD1O75665 1012 aa8.71□□□□□ -1.02
COL28A1-202ENST00000430711 ABTB2Q8N961 1025 aa8.71□□□□□ -1.02
COL28A1-202ENST00000430711 KLHDC4Q8TBB5 520 aa8.71□□□□□ -1.02
COL28A1-202ENST00000430711 NDUFB9Q9Y6M9 179 aa8.71□□□□□ -1.02
COL28A1-202ENST00000430711 KDM3BQ7LBC6 1761 aa8.71□□□□□ -1.02
COL28A1-202ENST00000430711 ROBO1Q9Y6N7 1651 aa8.7□□□□□ -1.02
COL28A1-202ENST00000430711 SGSM2O43147 1006 aa8.7□□□□□ -1.02
COL28A1-202ENST00000430711 HSP90AA2PQ14568 343 aaPredicted RBP8.7□□□□□ -1.02
COL28A1-202ENST00000430711 BEND3Q5T5X7 828 aa8.7□□□□□ -1.02
COL28A1-202ENST00000430711 GNAI3P08754 354 aa8.7□□□□□ -1.02
COL28A1-202ENST00000430711 PIP4K2AP48426 406 aaPredicted RBP8.7□□□□□ -1.02
COL28A1-202ENST00000430711 EIF4A1P60842 406 aaKnown RBP8.7□□□□□ -1.02
COL28A1-202ENST00000430711 NECAB1Q8N987 351 aa8.7□□□□□ -1.02
COL28A1-202ENST00000430711 EDC3Q96F86 508 aaKnown RBP8.7□□□□□ -1.02
COL28A1-202ENST00000430711 KAZALD1Q96I82 304 aa8.7□□□□□ -1.02
COL28A1-202ENST00000430711 NOL7Q9UMY1 257 aaKnown RBP8.7□□□□□ -1.02
COL28A1-202ENST00000430711 TTC21AQ8NDW8 1320 aa8.7□□□□□ -1.02
COL28A1-202ENST00000430711 RAD50Q92878 1312 aa8.7□□□□□ -1.02
COL28A1-202ENST00000430711 FAM227BQ96M60 508 aa8.69□□□□□ -1.02
COL28A1-202ENST00000430711 USP25Q9UHP3 1055 aa8.69□□□□□ -1.02
COL28A1-202ENST00000430711 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.69□□□□□ -1.02
COL28A1-202ENST00000430711 FIBPO43427 364 aa8.69□□□□□ -1.02
COL28A1-202ENST00000430711 HCLS1P14317 486 aaPredicted RBP8.69□□□□□ -1.02
COL28A1-202ENST00000430711 ZKSCAN5Q9Y2L8 839 aa8.69□□□□□ -1.02
COL28A1-202ENST00000430711 CEMIPQ8WUJ3 1361 aa8.69□□□□□ -1.02
COL28A1-202ENST00000430711 JCADQ9P266 1359 aa8.69□□□□□ -1.02
COL28A1-202ENST00000430711 SYT1P21579 422 aa8.68□□□□□ -1.02
COL28A1-202ENST00000430711 ANKLE2Q86XL3 938 aa8.68□□□□□ -1.02
COL28A1-202ENST00000430711 CCDC83Q8IWF9 413 aa8.68□□□□□ -1.02
COL28A1-202ENST00000430711 TTC12Q9H892 705 aaPredicted RBP8.68□□□□□ -1.02
COL28A1-202ENST00000430711 NFAT5O94916 1531 aa8.68□□□□□ -1.02
COL28A1-202ENST00000430711 PHLPP1O60346 1717 aa8.68□□□□□ -1.02
COL28A1-202ENST00000430711 CACNA1FO60840 1977 aa8.68□□□□□ -1.02
COL28A1-202ENST00000430711 CASTP20810 708 aaKnown RBP8.68□□□□□ -1.02
COL28A1-202ENST00000430711 PTMSP20962 102 aa8.68□□□□□ -1.02
COL28A1-202ENST00000430711 MSNP26038 577 aaKnown RBP8.68□□□□□ -1.02
COL28A1-202ENST00000430711 DNM1Q05193 864 aaKnown RBP8.68□□□□□ -1.02
COL28A1-202ENST00000430711 SLFNL1Q499Z3 407 aa8.68□□□□□ -1.02
COL28A1-202ENST00000430711 PRPF40BQ6NWY9 871 aaKnown RBP8.68□□□□□ -1.02
COL28A1-202ENST00000430711 GIMAP6Q6P9H5 292 aa8.68□□□□□ -1.02
COL28A1-202ENST00000430711 VSIG10Q8N0Z9 540 aa8.68□□□□□ -1.02
COL28A1-202ENST00000430711 PXDNLA1KZ92 1463 aa8.67□□□□□ -1.02
COL28A1-202ENST00000430711 IL17RAQ96F46 866 aa8.67□□□□□ -1.02
COL28A1-202ENST00000430711 ARHGAP23Q9P227 1491 aa8.67□□□□□ -1.02
COL28A1-202ENST00000430711 CHMP3Q9Y3E7 222 aa8.67□□□□□ -1.02
COL28A1-202ENST00000430711 LRP6O75581 1613 aa8.67□□□□□ -1.02
COL28A1-202ENST00000430711 COL15A1P39059 1388 aa8.66□□□□□ -1.02
COL28A1-202ENST00000430711 SASH1O94885 1247 aa8.66□□□□□ -1.02
COL28A1-202ENST00000430711 RXRBP28702 533 aa8.66□□□□□ -1.02
COL28A1-202ENST00000430711 FERMT3Q86UX7 667 aa8.66□□□□□ -1.02
COL28A1-202ENST00000430711 DNAAF4Q8WXU2 420 aa8.66□□□□□ -1.02
COL28A1-202ENST00000430711 CCDC8Q9H0W5 538 aaPredicted RBP8.66□□□□□ -1.02
COL28A1-202ENST00000430711 SIL1Q9H173 461 aa8.66□□□□□ -1.02
COL28A1-202ENST00000430711 TSPY26PQ9H489 355 aa8.66□□□□□ -1.02
COL28A1-202ENST00000430711 HYPKQ9NX55 129 aa8.66□□□□□ -1.02
COL28A1-202ENST00000430711 MAP3K2Q9Y2U5 619 aa8.66□□□□□ -1.02
COL28A1-202ENST00000430711 SLIT1O75093 1534 aa8.66□□□□□ -1.02
COL28A1-202ENST00000430711 ZNF500O60304 480 aaPredicted RBP8.66□□□□□ -1.02
COL28A1-202ENST00000430711 HAP1P54257 671 aaPredicted RBP8.66□□□□□ -1.02
COL28A1-202ENST00000430711 ANAPC15P60006 121 aa8.66□□□□□ -1.02
COL28A1-202ENST00000430711 ME3Q16798 604 aa8.66□□□□□ -1.02
COL28A1-202ENST00000430711 EPHA10Q5JZY3 1008 aa8.66□□□□□ -1.02
COL28A1-202ENST00000430711 INTS4Q96HW7 963 aaKnown RBP8.66□□□□□ -1.02
COL28A1-202ENST00000430711 SUCLG2Q96I99 432 aa8.66□□□□□ -1.02
COL28A1-202ENST00000430711 FAM13BQ9NYF5 915 aa8.66□□□□□ -1.02
COL28A1-202ENST00000430711 AXIN2Q9Y2T1 843 aa8.66□□□□□ -1.02
COL28A1-202ENST00000430711 RGPD5Q99666 1765 aa8.66□□□□□ -1.02
COL28A1-202ENST00000430711 UQCRHLA0A096LP55 91 aa8.65□□□□□ -1.02
COL28A1-202ENST00000430711 A0A0D9SFI3 127 aa8.65□□□□□ -1.02
COL28A1-202ENST00000430711 PPFIA3O75145 1194 aa8.65□□□□□ -1.02
COL28A1-202ENST00000430711 UQCRHP07919 91 aa8.65□□□□□ -1.02
COL28A1-202ENST00000430711 ZSCAN22P10073 491 aaPredicted RBP8.65□□□□□ -1.02
COL28A1-202ENST00000430711 AIMP1Q12904 312 aaKnown RBP8.65□□□□□ -1.02
COL28A1-202ENST00000430711 SLC39A6Q13433 755 aa8.65□□□□□ -1.02
COL28A1-202ENST00000430711 EAF2Q96CJ1 260 aaPredicted RBP8.65□□□□□ -1.02
COL28A1-202ENST00000430711 JAKMIP1Q96N16 626 aaKnown RBP8.65□□□□□ -1.02
COL28A1-202ENST00000430711 TPCN1Q9ULQ1 816 aa8.65□□□□□ -1.02
COL28A1-202ENST00000430711 C5P01031 1676 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms