RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 SIK1P57059 783 aa12.71□□□□□ -0.38
TCOF1-204ENST00000427724 SART3Q15020 963 aaKnown RBP12.71□□□□□ -0.38
TCOF1-204ENST00000427724 KRT24Q2M2I5 525 aa12.71□□□□□ -0.38
TCOF1-204ENST00000427724 IFFO2Q5TF58 517 aa12.71□□□□□ -0.38
TCOF1-204ENST00000427724 INTS3Q68E01 1043 aaKnown RBP12.71□□□□□ -0.38
TCOF1-204ENST00000427724 FEZ1Q99689 392 aa12.71□□□□□ -0.38
TCOF1-204ENST00000427724 ADGRL3Q9HAR2 1447 aa12.7□□□□□ -0.38
TCOF1-204ENST00000427724 TRIM29Q14134 588 aa12.7□□□□□ -0.38
TCOF1-204ENST00000427724 RRAGDQ9NQL2 400 aaPredicted RBP12.7□□□□□ -0.38
TCOF1-204ENST00000427724 ZMYM4Q5VZL5 1548 aa12.7□□□□□ -0.38
TCOF1-204ENST00000427724 SBNO1A3KN83 1393 aa12.7□□□□□ -0.38
TCOF1-204ENST00000427724 PIK3R4Q99570 1358 aa12.7□□□□□ -0.38
TCOF1-204ENST00000427724 GCC1Q96CN9 775 aa12.7□□□□□ -0.38
TCOF1-204ENST00000427724 LRRCC1Q9C099 1032 aa12.7□□□□□ -0.38
TCOF1-204ENST00000427724 PIK3C2GO75747 1445 aa12.7□□□□□ -0.38
TCOF1-204ENST00000427724 IRS4O14654 1257 aaPredicted RBP12.7□□□□□ -0.38
TCOF1-204ENST00000427724 FOSBP53539 338 aa12.7□□□□□ -0.38
TCOF1-204ENST00000427724 CREBRFQ8IUR6 639 aa12.7□□□□□ -0.38
TCOF1-204ENST00000427724 ZNF496Q96IT1 587 aaPredicted RBP12.7□□□□□ -0.38
TCOF1-204ENST00000427724 JAG2Q9Y219 1238 aa12.7□□□□□ -0.38
TCOF1-204ENST00000427724 MINDY4BA8MYZ0 360 aa12.69□□□□□ -0.38
TCOF1-204ENST00000427724 R3HDM1Q15032 1099 aaKnown RBP12.69□□□□□ -0.38
TCOF1-204ENST00000427724 AIDAQ96BJ3 306 aa12.69□□□□□ -0.38
TCOF1-204ENST00000427724 FAM89AQ96GI7 184 aa12.69□□□□□ -0.38
TCOF1-204ENST00000427724 CCDC8Q9H0W5 538 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-204ENST00000427724 EIF6P56537 245 aaKnown RBP12.69□□□□□ -0.38
TCOF1-204ENST00000427724 SLC4A8Q2Y0W8 1093 aa12.69□□□□□ -0.38
TCOF1-204ENST00000427724 DPY19L2Q6NUT2 758 aa12.69□□□□□ -0.38
TCOF1-204ENST00000427724 LMBR1LQ6UX01 489 aa12.69□□□□□ -0.38
TCOF1-204ENST00000427724 LRRFIP2Q9Y608 721 aaKnown RBP12.69□□□□□ -0.38
TCOF1-204ENST00000427724 IBSPP21815 317 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-204ENST00000427724 WDR17Q8IZU2 1322 aa12.69□□□□□ -0.38
TCOF1-204ENST00000427724 PRR36Q9H6K5 1346 aa12.69□□□□□ -0.38
TCOF1-204ENST00000427724 NLGN1Q8N2Q7 840 aa12.68□□□□□ -0.38
TCOF1-204ENST00000427724 ASAP1Q9ULH1 1129 aa12.68□□□□□ -0.38
TCOF1-204ENST00000427724 ADGBQ8N7X0 1667 aa12.68□□□□□ -0.38
TCOF1-204ENST00000427724 ZSCAN25Q6NSZ9 544 aa12.68□□□□□ -0.38
TCOF1-204ENST00000427724 SYAP1Q96A49 352 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-204ENST00000427724 NUTM1Q86Y26 1132 aa12.68□□□□□ -0.38
TCOF1-204ENST00000427724 EDC4Q6P2E9 1401 aaKnown RBP12.68□□□□□ -0.38
TCOF1-204ENST00000427724 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.68□□□□□ -0.38
TCOF1-204ENST00000427724 EYA3Q99504 573 aa12.68□□□□□ -0.38
TCOF1-204ENST00000427724 BOLA2Q9H3K6 86 aa12.68□□□□□ -0.38
TCOF1-204ENST00000427724 ARAP3Q8WWN8 1544 aa12.67□□□□□ -0.38
TCOF1-204ENST00000427724 NUCB2P80303 420 aa12.67□□□□□ -0.38
TCOF1-204ENST00000427724 SLC52A2Q9HAB3 445 aa12.67□□□□□ -0.38
TCOF1-204ENST00000427724 MKNK2Q9HBH9 465 aa12.67□□□□□ -0.38
TCOF1-204ENST00000427724 MAP3K5Q99683 1374 aa12.67□□□□□ -0.38
TCOF1-204ENST00000427724 CAVIN1Q6NZI2 390 aaKnown RBP12.67□□□□□ -0.38
TCOF1-204ENST00000427724 EIF2AK4Q9P2K8 1649 aaKnown RBP12.67□□□□□ -0.38
TCOF1-204ENST00000427724 SLF2Q8IX21 1173 aa12.67□□□□□ -0.38
TCOF1-204ENST00000427724 CNKSR2Q8WXI2 1034 aa12.67□□□□□ -0.38
TCOF1-204ENST00000427724 CCDC34Q96HJ3 373 aa12.67□□□□□ -0.38
TCOF1-204ENST00000427724 K7ELQ4 463 aaPredicted RBP12.66□□□□□ -0.38
TCOF1-204ENST00000427724 XRCC6P12956 609 aaKnown RBP eCLIP12.66□□□□□ -0.38
TCOF1-204ENST00000427724 ATP2B1P20020 1258 aa12.66□□□□□ -0.38
TCOF1-204ENST00000427724 RBM17Q96I25 401 aaKnown RBP12.66□□□□□ -0.38
TCOF1-204ENST00000427724 LRRIQ1Q96JM4 1722 aa12.66□□□□□ -0.38
TCOF1-204ENST00000427724 POLR3AO14802 1390 aaPredicted RBP12.66□□□□□ -0.38
TCOF1-204ENST00000427724 LDHCP07864 332 aa12.66□□□□□ -0.38
TCOF1-204ENST00000427724 DRC7Q8IY82 874 aa12.66□□□□□ -0.38
TCOF1-204ENST00000427724 SPATA31A6Q5VVP1 1343 aa12.66□□□□□ -0.38
TCOF1-204ENST00000427724 SH3TC1Q8TE82 1336 aa12.66□□□□□ -0.38
TCOF1-204ENST00000427724 HTATSF1O43719 755 aaKnown RBP12.65□□□□□ -0.38
TCOF1-204ENST00000427724 MAP3K12Q12852 859 aa12.65□□□□□ -0.38
TCOF1-204ENST00000427724 PRKG1Q13976 671 aa12.65□□□□□ -0.38
TCOF1-204ENST00000427724 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.65□□□□□ -0.38
TCOF1-204ENST00000427724 DEFB132Q7Z7B7 95 aa12.65□□□□□ -0.38
TCOF1-204ENST00000427724 PHKG2P15735 406 aa12.65□□□□□ -0.38
TCOF1-204ENST00000427724 DPP8Q6V1X1 898 aaPredicted RBP12.65□□□□□ -0.38
TCOF1-204ENST00000427724 C2CD5Q86YS7 1000 aa12.65□□□□□ -0.38
TCOF1-204ENST00000427724 PIBF1Q8WXW3 757 aa12.65□□□□□ -0.38
TCOF1-204ENST00000427724 CWF19L2Q2TBE0 894 aaKnown RBP12.65□□□□□ -0.39
TCOF1-204ENST00000427724 USPL1Q5W0Q7 1092 aa12.65□□□□□ -0.39
TCOF1-204ENST00000427724 ERVV-2B6SEH9 535 aa12.64□□□□□ -0.39
TCOF1-204ENST00000427724 KSR2Q6VAB6 950 aa12.64□□□□□ -0.39
TCOF1-204ENST00000427724 C8orf58Q8NAV2 365 aa12.64□□□□□ -0.39
TCOF1-204ENST00000427724 RNF214Q8ND24 703 aa12.64□□□□□ -0.39
TCOF1-204ENST00000427724 NUP133Q8WUM0 1156 aa12.64□□□□□ -0.39
TCOF1-204ENST00000427724 PRDM10Q9NQV6 1147 aa12.64□□□□□ -0.39
TCOF1-204ENST00000427724 NEK4P51957 841 aa12.64□□□□□ -0.39
TCOF1-204ENST00000427724 ARHGEF5Q12774 1597 aa12.64□□□□□ -0.39
TCOF1-204ENST00000427724 PRPF40AO75400 957 aaKnown RBP12.64□□□□□ -0.39
TCOF1-204ENST00000427724 UFL1O94874 794 aa12.64□□□□□ -0.39
TCOF1-204ENST00000427724 CLCN1P35523 988 aa12.64□□□□□ -0.39
TCOF1-204ENST00000427724 ABCC3O15438 1527 aa12.63□□□□□ -0.39
TCOF1-204ENST00000427724 RABEP1Q15276 862 aa12.63□□□□□ -0.39
TCOF1-204ENST00000427724 MAP7D2Q96T17 732 aa12.63□□□□□ -0.39
TCOF1-204ENST00000427724 SPON1Q9HCB6 807 aa12.63□□□□□ -0.39
TCOF1-204ENST00000427724 PPIP5K2O43314 1243 aa12.62□□□□□ -0.39
TCOF1-204ENST00000427724 IL13P35225 146 aa12.62□□□□□ -0.39
TCOF1-204ENST00000427724 PARP10Q53GL7 1025 aa12.62□□□□□ -0.39
TCOF1-204ENST00000427724 NIM1KQ8IY84 436 aa12.62□□□□□ -0.39
TCOF1-204ENST00000427724 KIF1BPQ96EK5 621 aa12.62□□□□□ -0.39
TCOF1-204ENST00000427724 ERBB3P21860 1342 aa12.62□□□□□ -0.39
TCOF1-204ENST00000427724 BAG3O95817 575 aa12.62□□□□□ -0.39
TCOF1-204ENST00000427724 PICALMQ13492 652 aa12.62□□□□□ -0.39
TCOF1-204ENST00000427724 RPAP2Q8IXW5 612 aaPredicted RBP12.62□□□□□ -0.39
TCOF1-204ENST00000427724 MPNDQ8N594 471 aa12.62□□□□□ -0.39
TCOF1-204ENST00000427724 TNPO1Q92973 898 aaKnown RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms