RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 PLEKHM2Q8IWE5 1019 aa11.12□□□□□ -0.63
LINC01040-201ENST00000425048 TPCN2Q8NHX9 752 aa11.11□□□□□ -0.63
LINC01040-201ENST00000425048 C7orf43Q8WVR3 580 aa11.11□□□□□ -0.63
LINC01040-201ENST00000425048 POM121CA8CG34 1229 aa11.1□□□□□ -0.63
LINC01040-201ENST00000425048 SYT9Q86SS6 491 aa11.1□□□□□ -0.63
LINC01040-201ENST00000425048 CD163Q86VB7 1156 aa11.1□□□□□ -0.63
LINC01040-201ENST00000425048 ELOA3CA0A087WX78 387 aaPredicted RBP11.09□□□□□ -0.63
LINC01040-201ENST00000425048 USP17L3A6NCW0 530 aa11.09□□□□□ -0.63
LINC01040-201ENST00000425048 USP17L4A6NCW7 530 aa11.09□□□□□ -0.63
LINC01040-201ENST00000425048 ELOA3DA6NLF2 546 aaPredicted RBP11.09□□□□□ -0.63
LINC01040-201ENST00000425048 FURINP09958 794 aa11.09□□□□□ -0.63
LINC01040-201ENST00000425048 ELOA3BQ3SY89 546 aa11.09□□□□□ -0.63
LINC01040-201ENST00000425048 USP17L2Q6R6M4 530 aa11.09□□□□□ -0.63
LINC01040-201ENST00000425048 USP17L1Q7RTZ2 530 aa11.09□□□□□ -0.63
LINC01040-201ENST00000425048 ELOA3Q8NG57 546 aa11.09□□□□□ -0.63
LINC01040-201ENST00000425048 ADAMTS19Q8TE59 1207 aa11.09□□□□□ -0.63
LINC01040-201ENST00000425048 CHMP3Q9Y3E7 222 aa11.09□□□□□ -0.63
LINC01040-201ENST00000425048 CLDN10P78369 228 aa11.08□□□□□ -0.64
LINC01040-201ENST00000425048 PLVAPQ9BX97 442 aa11.08□□□□□ -0.64
LINC01040-201ENST00000425048 KIAA1024Q9UPX6 916 aa11.08□□□□□ -0.64
LINC01040-201ENST00000425048 ATP9BO43861 1147 aa11.07□□□□□ -0.64
LINC01040-201ENST00000425048 SIN3BO75182 1162 aa11.07□□□□□ -0.64
LINC01040-201ENST00000425048 PSMA6P60900 246 aaKnown RBP11.07□□□□□ -0.64
LINC01040-201ENST00000425048 SFSWAPQ12872 951 aaKnown RBP11.07□□□□□ -0.64
LINC01040-201ENST00000425048 C1orf53Q5VUE5 145 aa11.07□□□□□ -0.64
LINC01040-201ENST00000425048 LARGE2Q8N3Y3 721 aa11.07□□□□□ -0.64
LINC01040-201ENST00000425048 RHPN1Q8TCX5 695 aa11.07□□□□□ -0.64
LINC01040-201ENST00000425048 ANKIB1Q9P2G1 1089 aa11.07□□□□□ -0.64
LINC01040-201ENST00000425048 PALM3A6NDB9 673 aaPredicted RBP11.06□□□□□ -0.64
LINC01040-201ENST00000425048 M0R2N6 131 aa11.06□□□□□ -0.64
LINC01040-201ENST00000425048 SH3PXD2AQ5TCZ1 1133 aa11.06□□□□□ -0.64
LINC01040-201ENST00000425048 OGFOD1Q8N543 542 aa11.06□□□□□ -0.64
LINC01040-201ENST00000425048 TRIM11Q96F44 468 aa11.06□□□□□ -0.64
LINC01040-201ENST00000425048 MKRN1Q9UHC7 482 aaKnown RBP11.06□□□□□ -0.64
LINC01040-201ENST00000425048 HCN4Q9Y3Q4 1203 aa11.06□□□□□ -0.64
LINC01040-201ENST00000425048 CHRNA4P43681 627 aa11.05□□□□□ -0.64
LINC01040-201ENST00000425048 UCN2Q96RP3 112 aa11.05□□□□□ -0.64
LINC01040-201ENST00000425048 TSPAN10Q9H1Z9 355 aaPredicted RBP11.05□□□□□ -0.64
LINC01040-201ENST00000425048 RBM19Q9Y4C8 960 aaKnown RBP11.05□□□□□ -0.64
LINC01040-201ENST00000425048 SPDYE3A6NKU9 549 aa11.04□□□□□ -0.64
LINC01040-201ENST00000425048 ADARB2-AS1A8MUL3 147 aa11.04□□□□□ -0.64
LINC01040-201ENST00000425048 NEUROD1Q13562 356 aa11.04□□□□□ -0.64
LINC01040-201ENST00000425048 SPATA31C1P0DKV0 1188 aa11.03□□□□□ -0.64
LINC01040-201ENST00000425048 HIRAP54198 1017 aaPredicted RBP11.03□□□□□ -0.64
LINC01040-201ENST00000425048 CEP63Q96MT8 703 aa11.03□□□□□ -0.64
LINC01040-201ENST00000425048 SLC30A3Q99726 388 aa11.03□□□□□ -0.64
LINC01040-201ENST00000425048 MDFIQ99750 246 aa11.03□□□□□ -0.64
LINC01040-201ENST00000425048 SFI1A8K8P3 1242 aa11.02□□□□□ -0.65
LINC01040-201ENST00000425048 POTEAQ6S8J7 498 aa11.02□□□□□ -0.65
LINC01040-201ENST00000425048 PHACTR1Q9C0D0 580 aa11.02□□□□□ -0.65
LINC01040-201ENST00000425048 SPEM2Q0P670 501 aa11.01□□□□□ -0.65
LINC01040-201ENST00000425048 SIX5Q8N196 739 aa11.01□□□□□ -0.65
LINC01040-201ENST00000425048 TNFRSF25Q93038 417 aa11.01□□□□□ -0.65
LINC01040-201ENST00000425048 TSEN2Q8NCE0 465 aaKnown RBP11□□□□□ -0.65
LINC01040-201ENST00000425048 BRD7Q9NPI1 651 aa11□□□□□ -0.65
LINC01040-201ENST00000425048 PPP1R12BO60237 982 aaPredicted RBP10.99□□□□□ -0.65
LINC01040-201ENST00000425048 PRRT3Q5FWE3 981 aa10.99□□□□□ -0.65
LINC01040-201ENST00000425048 SUSD3Q96L08 255 aa10.99□□□□□ -0.65
LINC01040-201ENST00000425048 KCNH4Q9UQ05 1017 aa10.99□□□□□ -0.65
LINC01040-201ENST00000425048 GATA4P43694 442 aa10.98□□□□□ -0.65
LINC01040-201ENST00000425048 KCNQ4P56696 695 aa10.98□□□□□ -0.65
LINC01040-201ENST00000425048 XP32Q5T750 250 aa10.98□□□□□ -0.65
LINC01040-201ENST00000425048 ZNF594Q96JF6 807 aaPredicted RBP10.98□□□□□ -0.65
LINC01040-201ENST00000425048 HSH2DQ96JZ2 352 aa10.98□□□□□ -0.65
LINC01040-201ENST00000425048 ATAD2Q6PL18 1390 aa10.98□□□□□ -0.65
LINC01040-201ENST00000425048 M0R082 166 aa10.97□□□□□ -0.65
LINC01040-201ENST00000425048 DOC2BQ14184 412 aa10.97□□□□□ -0.65
LINC01040-201ENST00000425048 STAG2Q8N3U4 1231 aa10.97□□□□□ -0.65
LINC01040-201ENST00000425048 GAS2L2Q8NHY3 880 aa10.97□□□□□ -0.65
LINC01040-201ENST00000425048 ZNF417Q8TAU3 575 aa10.97□□□□□ -0.65
LINC01040-201ENST00000425048 ZNF587Q96SQ5 575 aaPredicted RBP10.97□□□□□ -0.65
LINC01040-201ENST00000425048 PRDM6Q9NQX0 595 aa10.97□□□□□ -0.65
LINC01040-201ENST00000425048 DKK1O94907 266 aa10.96□□□□□ -0.65
LINC01040-201ENST00000425048 RASA1P20936 1047 aa10.96□□□□□ -0.65
LINC01040-201ENST00000425048 ALDH16A1Q8IZ83 802 aa10.96□□□□□ -0.65
LINC01040-201ENST00000425048 MICALL1Q8N3F8 863 aa10.96□□□□□ -0.65
LINC01040-201ENST00000425048 ZNF280CQ8ND82 737 aa10.96□□□□□ -0.65
LINC01040-201ENST00000425048 TFIP11Q9UBB9 837 aaKnown RBP10.96□□□□□ -0.65
LINC01040-201ENST00000425048 STARD13Q9Y3M8 1113 aa10.96□□□□□ -0.65
LINC01040-201ENST00000425048 C21orf2O43822 256 aa10.95□□□□□ -0.66
LINC01040-201ENST00000425048 ADH7P40394 386 aa10.95□□□□□ -0.66
LINC01040-201ENST00000425048 TYRO3Q06418 890 aa10.95□□□□□ -0.66
LINC01040-201ENST00000425048 HIF1AQ16665 826 aa10.95□□□□□ -0.66
LINC01040-201ENST00000425048 APBA3O96018 575 aa10.94□□□□□ -0.66
LINC01040-201ENST00000425048 SEC13P55735 322 aa10.94□□□□□ -0.66
LINC01040-201ENST00000425048 TRIM28Q13263 835 aaKnown RBP10.94□□□□□ -0.66
LINC01040-201ENST00000425048 RAB44Q7Z6P3 723 aaPredicted RBP10.94□□□□□ -0.66
LINC01040-201ENST00000425048 C2orf49Q9BVC5 232 aaPredicted RBP10.94□□□□□ -0.66
LINC01040-201ENST00000425048 ALBP02768 609 aa10.93□□□□□ -0.66
LINC01040-201ENST00000425048 COL9A3Q14050 684 aaPredicted RBP10.93□□□□□ -0.66
LINC01040-201ENST00000425048 SCG3Q8WXD2 468 aaKnown RBP10.93□□□□□ -0.66
LINC01040-201ENST00000425048 SEMA6BQ9H3T3 888 aa10.93□□□□□ -0.66
LINC01040-201ENST00000425048 LARP1Q6PKG0 1096 aaKnown RBP10.92□□□□□ -0.66
LINC01040-201ENST00000425048 C8orf86Q6ZUL3 223 aa10.92□□□□□ -0.66
LINC01040-201ENST00000425048 BTLAQ7Z6A9 289 aa10.92□□□□□ -0.66
LINC01040-201ENST00000425048 FNBP4Q8N3X1 1017 aaPredicted RBP10.92□□□□□ -0.66
LINC01040-201ENST00000425048 CHMP7Q8WUX9 453 aaPredicted RBP10.92□□□□□ -0.66
LINC01040-201ENST00000425048 GLMNQ92990 594 aa10.92□□□□□ -0.66
LINC01040-201ENST00000425048 BHMTQ93088 406 aa10.92□□□□□ -0.66
LINC01040-201ENST00000425048 CLUAP1Q96AJ1 413 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms