RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 NEURL1BA8MQ27 555 aa10.23□□□□□ -0.77
USP54-203ENST00000418501 ST18O60284 1047 aa10.23□□□□□ -0.77
USP54-203ENST00000418501 ANXA1P04083 346 aa10.23□□□□□ -0.77
USP54-203ENST00000418501 CCDC57Q2TAC2 916 aa10.23□□□□□ -0.77
USP54-203ENST00000418501 GORABQ5T7V8 394 aa10.23□□□□□ -0.77
USP54-203ENST00000418501 DIAPH3Q9NSV4 1193 aa10.23□□□□□ -0.77
USP54-203ENST00000418501 USP21Q9UK80 565 aa10.23□□□□□ -0.77
USP54-203ENST00000418501 FBXO3Q9UK99 471 aa10.23□□□□□ -0.77
USP54-203ENST00000418501 AKAP2Q9Y2D5 859 aa10.23□□□□□ -0.77
USP54-203ENST00000418501 USP16Q9Y5T5 823 aa10.23□□□□□ -0.77
USP54-203ENST00000418501 PHLPP1O60346 1717 aa10.23□□□□□ -0.77
USP54-203ENST00000418501 OSBPL3Q9H4L5 887 aa10.23□□□□□ -0.77
USP54-203ENST00000418501 COL18A1P39060 1754 aa10.23□□□□□ -0.77
USP54-203ENST00000418501 XIRP1Q702N8 1843 aaKnown RBP10.22□□□□□ -0.77
USP54-203ENST00000418501 RILPL2Q969X0 211 aa10.22□□□□□ -0.77
USP54-203ENST00000418501 PLEKHM2Q8IWE5 1019 aa10.22□□□□□ -0.77
USP54-203ENST00000418501 IL6STP40189 918 aaPredicted RBP10.22□□□□□ -0.77
USP54-203ENST00000418501 POLA2Q14181 598 aa10.22□□□□□ -0.77
USP54-203ENST00000418501 PARP10Q53GL7 1025 aa10.22□□□□□ -0.77
USP54-203ENST00000418501 TRPC5Q9UL62 973 aaPredicted RBP10.22□□□□□ -0.77
USP54-203ENST00000418501 PDE1AP54750 535 aa10.21□□□□□ -0.77
USP54-203ENST00000418501 COL22A1Q8NFW1 1626 aaPredicted RBP10.21□□□□□ -0.77
USP54-203ENST00000418501 ERVV-1B6SEH8 477 aa10.21□□□□□ -0.77
USP54-203ENST00000418501 KDM3BQ7LBC6 1761 aa10.21□□□□□ -0.77
USP54-203ENST00000418501 UTYO14607 1347 aa10.21□□□□□ -0.77
USP54-203ENST00000418501 PKD1L3Q7Z443 1732 aa10.21□□□□□ -0.77
USP54-203ENST00000418501 ADCY9O60503 1353 aa10.21□□□□□ -0.78
USP54-203ENST00000418501 NPHP1O15259 732 aa10.21□□□□□ -0.78
USP54-203ENST00000418501 PTMSP20962 102 aa10.21□□□□□ -0.78
USP54-203ENST00000418501 RABEP1Q15276 862 aa10.21□□□□□ -0.78
USP54-203ENST00000418501 TICAM2Q86XR7 235 aa10.21□□□□□ -0.78
USP54-203ENST00000418501 AK7Q96M32 723 aa10.21□□□□□ -0.78
USP54-203ENST00000418501 ECHDC1Q9NTX5 307 aa10.21□□□□□ -0.78
USP54-203ENST00000418501 ATP6V1AP38606 617 aa10.21□□□□□ -0.78
USP54-203ENST00000418501 PRIM1P49642 420 aaKnown RBP10.21□□□□□ -0.78
USP54-203ENST00000418501 MCM2P49736 904 aa10.21□□□□□ -0.78
USP54-203ENST00000418501 TCIRG1Q13488 830 aa10.21□□□□□ -0.78
USP54-203ENST00000418501 PIGBQ92521 554 aa10.21□□□□□ -0.78
USP54-203ENST00000418501 CHMP4CQ96CF2 233 aa10.21□□□□□ -0.78
USP54-203ENST00000418501 CCDC87Q9NVE4 849 aa10.21□□□□□ -0.78
USP54-203ENST00000418501 GTF2E1P29083 439 aaPredicted RBP10.2□□□□□ -0.78
USP54-203ENST00000418501 UBE3BQ7Z3V4 1068 aa10.2□□□□□ -0.78
USP54-203ENST00000418501 ATG3Q9NT62 314 aa10.2□□□□□ -0.78
USP54-203ENST00000418501 KCNJ4P48050 445 aa10.2□□□□□ -0.78
USP54-203ENST00000418501 SIRT2Q8IXJ6 389 aa10.2□□□□□ -0.78
USP54-203ENST00000418501 TBC1D32Q96NH3 1257 aa10.2□□□□□ -0.78
USP54-203ENST00000418501 IL15P40933 162 aaPredicted RBP10.2□□□□□ -0.78
USP54-203ENST00000418501 CWF19L2Q2TBE0 894 aaKnown RBP10.2□□□□□ -0.78
USP54-203ENST00000418501 AACSQ86V21 672 aa10.2□□□□□ -0.78
USP54-203ENST00000418501 CEP126Q9P2H0 1117 aa10.2□□□□□ -0.78
USP54-203ENST00000418501 STAP2Q9UGK3 403 aa10.2□□□□□ -0.78
USP54-203ENST00000418501 TRIM28Q13263 835 aaKnown RBP10.19□□□□□ -0.78
USP54-203ENST00000418501 DNAJC10Q8IXB1 793 aa10.19□□□□□ -0.78
USP54-203ENST00000418501 ZBTB3Q9H5J0 574 aa10.19□□□□□ -0.78
USP54-203ENST00000418501 COL15A1P39059 1388 aa10.19□□□□□ -0.78
USP54-203ENST00000418501 RGL2O15211 777 aa10.19□□□□□ -0.78
USP54-203ENST00000418501 PROSER3Q2NL68 480 aa10.19□□□□□ -0.78
USP54-203ENST00000418501 MAP3K15Q6ZN16 1313 aa10.19□□□□□ -0.78
USP54-203ENST00000418501 NBPF7P0C2Y1 421 aaPredicted RBP10.19□□□□□ -0.78
USP54-203ENST00000418501 IFIT5Q13325 482 aaKnown RBP10.19□□□□□ -0.78
USP54-203ENST00000418501 RNF20Q5VTR2 975 aa10.19□□□□□ -0.78
USP54-203ENST00000418501 DZIP3Q86Y13 1208 aaKnown RBP10.19□□□□□ -0.78
USP54-203ENST00000418501 EVI5LQ96CN4 794 aa10.19□□□□□ -0.78
USP54-203ENST00000418501 PCCAP05165 728 aaPredicted RBP10.18□□□□□ -0.78
USP54-203ENST00000418501 CCDC158Q5M9N0 1113 aa10.18□□□□□ -0.78
USP54-203ENST00000418501 BICC1Q9H694 974 aaKnown RBP10.18□□□□□ -0.78
USP54-203ENST00000418501 COPRSQ9NQ92 184 aa10.18□□□□□ -0.78
USP54-203ENST00000418501 SCN11AQ9UI33 1791 aa10.18□□□□□ -0.78
USP54-203ENST00000418501 DISP2A7MBM2 1401 aa10.18□□□□□ -0.78
USP54-203ENST00000418501 ANKRD18BA2A2Z9 1011 aa10.18□□□□□ -0.78
USP54-203ENST00000418501 SMARCA5O60264 1052 aaPredicted RBP10.18□□□□□ -0.78
USP54-203ENST00000418501 A1BGP04217 495 aa10.18□□□□□ -0.78
USP54-203ENST00000418501 PDIA6Q15084 440 aa10.18□□□□□ -0.78
USP54-203ENST00000418501 SUCLG2Q96I99 432 aa10.18□□□□□ -0.78
USP54-203ENST00000418501 CRYBG1Q9Y4K1 1723 aa10.18□□□□□ -0.78
USP54-203ENST00000418501 PNMA6EA0A0J9YXQ4 647 aa10.17□□□□□ -0.78
USP54-203ENST00000418501 GIGYF2Q6Y7W6 1299 aaKnown RBP10.17□□□□□ -0.78
USP54-203ENST00000418501 TBC1D9Q6ZT07 1266 aa10.17□□□□□ -0.78
USP54-203ENST00000418501 TRMT112Q9UI30 125 aaKnown RBP10.17□□□□□ -0.78
USP54-203ENST00000418501 ADAMTS7Q9UKP4 1686 aa10.17□□□□□ -0.78
USP54-203ENST00000418501 RGPD2P0DJD1 1756 aa10.17□□□□□ -0.78
USP54-203ENST00000418501 ATP5J2-PTCD1G3V325 749 aa10.17□□□□□ -0.78
USP54-203ENST00000418501 GOLGA6L22H0YM25 854 aa10.17□□□□□ -0.78
USP54-203ENST00000418501 FAM98CQ17RN3 349 aaKnown RBP10.17□□□□□ -0.78
USP54-203ENST00000418501 IL1RAPL2Q9NP60 686 aa10.17□□□□□ -0.78
USP54-203ENST00000418501 GPR108Q9NPR9 543 aa10.17□□□□□ -0.78
USP54-203ENST00000418501 LRP6O75581 1613 aa10.17□□□□□ -0.78
USP54-203ENST00000418501 ZKSCAN1P17029 563 aaPredicted RBP10.17□□□□□ -0.78
USP54-203ENST00000418501 ASAP1Q9ULH1 1129 aa10.17□□□□□ -0.78
USP54-203ENST00000418501 NYXQ9GZU5 481 aa10.17□□□□□ -0.78
USP54-203ENST00000418501 BCL9O00512 1426 aa10.16□□□□□ -0.78
USP54-203ENST00000418501 RGPD5Q99666 1765 aa10.16□□□□□ -0.78
USP54-203ENST00000418501 LOC102724428A0A0B4J2F2 783 aa10.16□□□□□ -0.78
USP54-203ENST00000418501 H7C1W4 665 aa10.16□□□□□ -0.78
USP54-203ENST00000418501 SDSP20132 328 aa10.16□□□□□ -0.78
USP54-203ENST00000418501 SIK1P57059 783 aa10.16□□□□□ -0.78
USP54-203ENST00000418501 ZSCAN25Q6NSZ9 544 aa10.16□□□□□ -0.78
USP54-203ENST00000418501 FNBP4Q8N3X1 1017 aaPredicted RBP10.16□□□□□ -0.78
USP54-203ENST00000418501 ZPR1O75312 459 aa10.16□□□□□ -0.78
USP54-203ENST00000418501 ZBTB38Q8NAP3 1195 aaPredicted RBP10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms