RNA–Protein interactions for RNA: ENST00000413582.6

RFFL-203, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 5 BASIC

Gene RFFL, Length 1,217 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-203ENST00000413582 CAMTA2O94983 1202 aa12.96□□□□□ -0.33
RFFL-203ENST00000413582 NCBP3Q53F19 620 aaKnown RBP12.96□□□□□ -0.33
RFFL-203ENST00000413582 SOGA3Q5TF21 947 aa12.96□□□□□ -0.33
RFFL-203ENST00000413582 ZNF790Q6PG37 636 aa12.96□□□□□ -0.33
RFFL-203ENST00000413582 TAF1DQ9H5J8 278 aaPredicted RBP12.96□□□□□ -0.33
RFFL-203ENST00000413582 CLSPNQ9HAW4 1339 aa12.95□□□□□ -0.34
RFFL-203ENST00000413582 MASTLQ96GX5 879 aa12.95□□□□□ -0.34
RFFL-203ENST00000413582 ZNF541Q9H0D2 1346 aa12.94□□□□□ -0.34
RFFL-203ENST00000413582 DIAPH1O60610 1272 aaKnown RBP12.94□□□□□ -0.34
RFFL-203ENST00000413582 CTCFP49711 727 aaPredicted RBP12.94□□□□□ -0.34
RFFL-203ENST00000413582 VEGFBP49765 207 aa12.94□□□□□ -0.34
RFFL-203ENST00000413582 ST5P78524 1137 aa12.94□□□□□ -0.34
RFFL-203ENST00000413582 IL17REQ8NFR9 667 aa12.94□□□□□ -0.34
RFFL-203ENST00000413582 C7orf43Q8WVR3 580 aa12.94□□□□□ -0.34
RFFL-203ENST00000413582 SETDB2Q96T68 719 aa12.94□□□□□ -0.34
RFFL-203ENST00000413582 TEX13AQ9BXU3 409 aaPredicted RBP12.94□□□□□ -0.34
RFFL-203ENST00000413582 THSD7BQ9C0I4 1608 aa12.93□□□□□ -0.34
RFFL-203ENST00000413582 TMEM88BA6NKF7 163 aa12.93□□□□□ -0.34
RFFL-203ENST00000413582 NPHP1O15259 732 aa12.93□□□□□ -0.34
RFFL-203ENST00000413582 ITGBL1O95965 494 aaPredicted RBP12.93□□□□□ -0.34
RFFL-203ENST00000413582 A1BGP04217 495 aa12.93□□□□□ -0.34
RFFL-203ENST00000413582 TEFQ10587 303 aa12.93□□□□□ -0.34
RFFL-203ENST00000413582 CCDC93Q567U6 631 aa12.93□□□□□ -0.34
RFFL-203ENST00000413582 AIDAQ96BJ3 306 aa12.93□□□□□ -0.34
RFFL-203ENST00000413582 CEMIPQ8WUJ3 1361 aa12.93□□□□□ -0.34
RFFL-203ENST00000413582 DZIP3Q86Y13 1208 aaKnown RBP12.92□□□□□ -0.34
RFFL-203ENST00000413582 FMNL2Q96PY5 1086 aa12.92□□□□□ -0.34
RFFL-203ENST00000413582 WBP1LQ9NX94 342 aa12.92□□□□□ -0.34
RFFL-203ENST00000413582 GNAT3A8MTJ3 354 aa12.91□□□□□ -0.34
RFFL-203ENST00000413582 FKBP4Q02790 459 aaKnown RBP eCLIP12.91□□□□□ -0.34
RFFL-203ENST00000413582 EAPPQ56P03 285 aaPredicted RBP12.91□□□□□ -0.34
RFFL-203ENST00000413582 GAS2L2Q8NHY3 880 aa12.91□□□□□ -0.34
RFFL-203ENST00000413582 ZNF277Q9NRM2 450 aaPredicted RBP12.91□□□□□ -0.34
RFFL-203ENST00000413582 SNED1Q8TER0 1413 aa12.9□□□□□ -0.34
RFFL-203ENST00000413582 KLRG2A4D1S0 409 aaPredicted RBP12.9□□□□□ -0.34
RFFL-203ENST00000413582 RASSF10A6NK89 507 aa12.9□□□□□ -0.34
RFFL-203ENST00000413582 KCNQ3O43525 872 aa12.9□□□□□ -0.34
RFFL-203ENST00000413582 NPR1P16066 1061 aa12.9□□□□□ -0.34
RFFL-203ENST00000413582 EPHX2P34913 555 aa12.9□□□□□ -0.34
RFFL-203ENST00000413582 LBX1P52954 281 aa12.9□□□□□ -0.34
RFFL-203ENST00000413582 NBPF5PQ86XG9 351 aaPredicted RBP12.9□□□□□ -0.34
RFFL-203ENST00000413582 HACL1Q9UJ83 578 aa12.9□□□□□ -0.34
RFFL-203ENST00000413582 KIF7Q2M1P5 1343 aa12.89□□□□□ -0.35
RFFL-203ENST00000413582 RNF123Q5XPI4 1314 aa12.89□□□□□ -0.35
RFFL-203ENST00000413582 LTBP1Q14766 1721 aa12.89□□□□□ -0.35
RFFL-203ENST00000413582 SLC34A2O95436 690 aa12.89□□□□□ -0.35
RFFL-203ENST00000413582 HSPA8P11142 646 aaKnown RBP12.89□□□□□ -0.35
RFFL-203ENST00000413582 PIP4K2AP48426 406 aaPredicted RBP12.89□□□□□ -0.35
RFFL-203ENST00000413582 OLFM4Q6UX06 510 aa12.89□□□□□ -0.35
RFFL-203ENST00000413582 NPM2Q86SE8 214 aaKnown RBP12.89□□□□□ -0.35
RFFL-203ENST00000413582 COL4A5P29400 1685 aa12.89□□□□□ -0.35
RFFL-203ENST00000413582 PER1O15534 1290 aaPredicted RBP12.88□□□□□ -0.35
RFFL-203ENST00000413582 NPM3O75607 178 aaKnown RBP12.88□□□□□ -0.35
RFFL-203ENST00000413582 CLEC4GQ6UXB4 293 aa12.88□□□□□ -0.35
RFFL-203ENST00000413582 CCER1Q8TC90 406 aaPredicted RBP12.88□□□□□ -0.35
RFFL-203ENST00000413582 LAMB4A4D0S4 1761 aa12.87□□□□□ -0.35
RFFL-203ENST00000413582 PRAMEF22A3QJZ6 481 aa12.87□□□□□ -0.35
RFFL-203ENST00000413582 BTBD11A6QL63 1104 aa12.87□□□□□ -0.35
RFFL-203ENST00000413582 FZD9O00144 591 aa12.87□□□□□ -0.35
RFFL-203ENST00000413582 U2SURPO15042 1029 aaKnown RBP12.87□□□□□ -0.35
RFFL-203ENST00000413582 CC2D1BQ5T0F9 858 aaKnown RBP12.87□□□□□ -0.35
RFFL-203ENST00000413582 MAP1SQ66K74 1059 aaPredicted RBP12.87□□□□□ -0.35
RFFL-203ENST00000413582 PNMA8AQ86V59 439 aaPredicted RBP12.87□□□□□ -0.35
RFFL-203ENST00000413582 CNTROBQ8N137 903 aa12.87□□□□□ -0.35
RFFL-203ENST00000413582 ABHD8Q96I13 439 aa12.87□□□□□ -0.35
RFFL-203ENST00000413582 CLEC11AQ9Y240 323 aa12.87□□□□□ -0.35
RFFL-203ENST00000413582 ZNF652Q9Y2D9 606 aa12.87□□□□□ -0.35
RFFL-203ENST00000413582 USP16Q9Y5T5 823 aa12.87□□□□□ -0.35
RFFL-203ENST00000413582 TRPM7Q96QT4 1865 aa12.87□□□□□ -0.35
RFFL-203ENST00000413582 RGL2O15211 777 aa12.86□□□□□ -0.35
RFFL-203ENST00000413582 IARSP41252 1262 aaKnown RBP12.86□□□□□ -0.35
RFFL-203ENST00000413582 DEFB115Q30KQ5 88 aa12.86□□□□□ -0.35
RFFL-203ENST00000413582 RTKN2Q8IZC4 609 aa12.86□□□□□ -0.35
RFFL-203ENST00000413582 WDR33Q9C0J8 1336 aaKnown RBP12.86□□□□□ -0.35
RFFL-203ENST00000413582 ABCC12Q96J65 1359 aa12.85□□□□□ -0.35
RFFL-203ENST00000413582 NPC1L1Q9UHC9 1359 aa12.85□□□□□ -0.35
RFFL-203ENST00000413582 MAP2K1Q02750 393 aaPredicted RBP12.85□□□□□ -0.35
RFFL-203ENST00000413582 FAM161AQ3B820 660 aa12.85□□□□□ -0.35
RFFL-203ENST00000413582 GPC2Q8N158 579 aa12.85□□□□□ -0.35
RFFL-203ENST00000413582 NIP7Q9Y221 180 aaKnown RBP eCLIP12.85□□□□□ -0.35
RFFL-203ENST00000413582 NBPF26B4DH59 902 aa12.84□□□□□ -0.35
RFFL-203ENST00000413582 NBPF10Q6P3W6 841 aaKnown RBP12.84□□□□□ -0.35
RFFL-203ENST00000413582 TPTE2Q6XPS3 522 aa12.84□□□□□ -0.35
RFFL-203ENST00000413582 SYNE4Q8N205 404 aa12.84□□□□□ -0.35
RFFL-203ENST00000413582 NBPF15Q8N660 670 aa12.84□□□□□ -0.35
RFFL-203ENST00000413582 PHACTR3Q96KR7 559 aa12.84□□□□□ -0.35
RFFL-203ENST00000413582 PSMD1Q99460 953 aa12.84□□□□□ -0.35
RFFL-203ENST00000413582 ABT1Q9ULW3 272 aaKnown RBP12.84□□□□□ -0.35
RFFL-203ENST00000413582 NUP98P52948 1817 aa12.83□□□□□ -0.35
RFFL-203ENST00000413582 SNRPA1P09661 255 aaKnown RBP12.83□□□□□ -0.36
RFFL-203ENST00000413582 PRKAR2BP31323 418 aa12.83□□□□□ -0.36
RFFL-203ENST00000413582 ZEB1P37275 1124 aaPredicted RBP12.83□□□□□ -0.36
RFFL-203ENST00000413582 CRY2Q49AN0 593 aa12.83□□□□□ -0.36
RFFL-203ENST00000413582 RSPH6AQ9H0K4 717 aa12.83□□□□□ -0.36
RFFL-203ENST00000413582 DDX21Q9NR30 783 aaKnown RBP eCLIP12.83□□□□□ -0.36
RFFL-203ENST00000413582 RIC1Q4ADV7 1423 aa12.82□□□□□ -0.36
RFFL-203ENST00000413582 FAM177BA6PVY3 158 aa12.82□□□□□ -0.36
RFFL-203ENST00000413582 JDP2Q8WYK2 163 aa12.82□□□□□ -0.36
RFFL-203ENST00000413582 ALDH1B1P30837 517 aa12.81□□□□□ -0.36
RFFL-203ENST00000413582 SCNN1DP51172 638 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms