RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 POLR1AO95602 1720 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-211ENST00000413186 GLRX3O76003 335 aaKnown RBP10.28□□□□□ -0.76
SYNE1-211ENST00000413186 IL1RAPL2Q9NP60 686 aa10.28□□□□□ -0.76
SYNE1-211ENST00000413186 CAVIN4Q5BKX8 364 aa10.28□□□□□ -0.76
SYNE1-211ENST00000413186 LDHAL6AQ6ZMR3 332 aa10.28□□□□□ -0.76
SYNE1-211ENST00000413186 SEPT12Q8IYM1 358 aa10.28□□□□□ -0.76
SYNE1-211ENST00000413186 FLAD1Q8NFF5 587 aa10.28□□□□□ -0.76
SYNE1-211ENST00000413186 MEIS3Q99687 375 aa10.28□□□□□ -0.76
SYNE1-211ENST00000413186 METTL22Q9BUU2 404 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-211ENST00000413186 CPDO75976 1380 aa10.28□□□□□ -0.76
SYNE1-211ENST00000413186 APBA3O96018 575 aa10.28□□□□□ -0.76
SYNE1-211ENST00000413186 RBM6P78332 1123 aaKnown RBP10.27□□□□□ -0.76
SYNE1-211ENST00000413186 ANKRD44Q8N8A2 993 aa10.27□□□□□ -0.76
SYNE1-211ENST00000413186 CCDC191Q8NCU4 936 aa10.27□□□□□ -0.76
SYNE1-211ENST00000413186 PHAXQ9H814 394 aaKnown RBP10.27□□□□□ -0.76
SYNE1-211ENST00000413186 SLC5A1P13866 664 aa10.27□□□□□ -0.77
SYNE1-211ENST00000413186 HDAC1Q13547 482 aaPredicted RBP10.27□□□□□ -0.77
SYNE1-211ENST00000413186 VPS72Q15906 364 aa10.27□□□□□ -0.77
SYNE1-211ENST00000413186 SYNE3Q6ZMZ3 975 aa10.27□□□□□ -0.77
SYNE1-211ENST00000413186 A1BGP04217 495 aa10.27□□□□□ -0.77
SYNE1-211ENST00000413186 PIP4K2AP48426 406 aaPredicted RBP10.27□□□□□ -0.77
SYNE1-211ENST00000413186 CPLX2Q6PUV4 134 aaKnown RBP10.27□□□□□ -0.77
SYNE1-211ENST00000413186 LRRC7Q96NW7 1537 aa10.27□□□□□ -0.77
SYNE1-211ENST00000413186 LOC102724428A0A0B4J2F2 783 aa10.26□□□□□ -0.77
SYNE1-211ENST00000413186 SIK1P57059 783 aa10.26□□□□□ -0.77
SYNE1-211ENST00000413186 ATP8B2P98198 1209 aa10.26□□□□□ -0.77
SYNE1-211ENST00000413186 OVOS2A0A0G2JMS6 1433 aa10.26□□□□□ -0.77
SYNE1-211ENST00000413186 GNL2Q13823 731 aaKnown RBP10.26□□□□□ -0.77
SYNE1-211ENST00000413186 IFT172Q9UG01 1749 aa10.26□□□□□ -0.77
SYNE1-211ENST00000413186 ZNF521Q96K83 1311 aa10.26□□□□□ -0.77
SYNE1-211ENST00000413186 ZNF853P0CG23 659 aa10.26□□□□□ -0.77
SYNE1-211ENST00000413186 MX1P20591 662 aa10.26□□□□□ -0.77
SYNE1-211ENST00000413186 VSIG10Q8N0Z9 540 aa10.26□□□□□ -0.77
SYNE1-211ENST00000413186 GJD4Q96KN9 370 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-211ENST00000413186 PARP3Q9Y6F1 533 aa10.26□□□□□ -0.77
SYNE1-211ENST00000413186 CYP27B1O15528 508 aa10.25□□□□□ -0.77
SYNE1-211ENST00000413186 POLD1P28340 1107 aa10.25□□□□□ -0.77
SYNE1-211ENST00000413186 LMBR1LQ6UX01 489 aa10.25□□□□□ -0.77
SYNE1-211ENST00000413186 ANKIB1Q9P2G1 1089 aa10.25□□□□□ -0.77
SYNE1-211ENST00000413186 SH3TC1Q8TE82 1336 aa10.25□□□□□ -0.77
SYNE1-211ENST00000413186 ZRSR1Q15695 479 aaKnown RBP10.25□□□□□ -0.77
SYNE1-211ENST00000413186 G2E3Q7L622 706 aa10.25□□□□□ -0.77
SYNE1-211ENST00000413186 RALYLQ86SE5 291 aaKnown RBP10.25□□□□□ -0.77
SYNE1-211ENST00000413186 ANKRD18AQ8IVF6 992 aa10.25□□□□□ -0.77
SYNE1-211ENST00000413186 TRMT2AQ8IZ69 625 aaKnown RBP10.25□□□□□ -0.77
SYNE1-211ENST00000413186 PRM3Q9NNZ6 103 aa10.25□□□□□ -0.77
SYNE1-211ENST00000413186 IL15P40933 162 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-211ENST00000413186 ARID3AQ99856 593 aa10.24□□□□□ -0.77
SYNE1-211ENST00000413186 IRS4O14654 1257 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-211ENST00000413186 FKBP4Q02790 459 aaKnown RBP eCLIP10.24□□□□□ -0.77
SYNE1-211ENST00000413186 ZNF526Q8TF50 670 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-211ENST00000413186 NACAP1Q9BZK3 213 aa10.24□□□□□ -0.77
SYNE1-211ENST00000413186 TAOK2Q9UL54 1235 aa10.24□□□□□ -0.77
SYNE1-211ENST00000413186 USP16Q9Y5T5 823 aa10.24□□□□□ -0.77
SYNE1-211ENST00000413186 GOLGA6L4A6NEF3 574 aa10.24□□□□□ -0.77
SYNE1-211ENST00000413186 KCNQ3O43525 872 aa10.24□□□□□ -0.77
SYNE1-211ENST00000413186 CWF19L2Q2TBE0 894 aaKnown RBP10.24□□□□□ -0.77
SYNE1-211ENST00000413186 KIF1AQ12756 1690 aa10.24□□□□□ -0.77
SYNE1-211ENST00000413186 KDRP35968 1356 aa10.24□□□□□ -0.77
SYNE1-211ENST00000413186 SLC3A2P08195 630 aaKnown RBP10.24□□□□□ -0.77
SYNE1-211ENST00000413186 PSMA5P28066 241 aa10.24□□□□□ -0.77
SYNE1-211ENST00000413186 ASAP1Q9ULH1 1129 aa10.23□□□□□ -0.77
SYNE1-211ENST00000413186 ERICH2A1L162 156 aa10.23□□□□□ -0.77
SYNE1-211ENST00000413186 IL6STP40189 918 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-211ENST00000413186 ZBTB40Q9NUA8 1239 aa10.23□□□□□ -0.77
SYNE1-211ENST00000413186 PODXL2Q9NZ53 605 aa10.23□□□□□ -0.77
SYNE1-211ENST00000413186 SSH2Q76I76 1423 aa10.23□□□□□ -0.77
SYNE1-211ENST00000413186 C22orf23Q9BZE7 217 aa10.23□□□□□ -0.77
SYNE1-211ENST00000413186 ECHDC1Q9NTX5 307 aa10.23□□□□□ -0.77
SYNE1-211ENST00000413186 LRP2BPQ9P2M1 347 aa10.23□□□□□ -0.77
SYNE1-211ENST00000413186 ADGRB2O60241 1585 aa10.23□□□□□ -0.77
SYNE1-211ENST00000413186 NUTM1Q86Y26 1132 aa10.23□□□□□ -0.77
SYNE1-211ENST00000413186 HEG1Q9ULI3 1381 aa10.22□□□□□ -0.77
SYNE1-211ENST00000413186 BARGINQ6ZT62 677 aa10.22□□□□□ -0.77
SYNE1-211ENST00000413186 BRPF1P55201 1214 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-211ENST00000413186 TCIRG1Q13488 830 aa10.22□□□□□ -0.77
SYNE1-211ENST00000413186 CNBD1Q8NA66 436 aa10.22□□□□□ -0.77
SYNE1-211ENST00000413186 RHPN1Q8TCX5 695 aa10.22□□□□□ -0.77
SYNE1-211ENST00000413186 PIGBQ92521 554 aa10.22□□□□□ -0.77
SYNE1-211ENST00000413186 CD163L1Q9NR16 1453 aa10.22□□□□□ -0.77
SYNE1-211ENST00000413186 RLBP1P12271 317 aa10.22□□□□□ -0.77
SYNE1-211ENST00000413186 AKAP17AQ02040 695 aaKnown RBP10.22□□□□□ -0.77
SYNE1-211ENST00000413186 SPATA31A1Q5TZJ5 1347 aa10.22□□□□□ -0.77
SYNE1-211ENST00000413186 KNDC1Q76NI1 1749 aa10.22□□□□□ -0.77
SYNE1-211ENST00000413186 UQCRFS1P1P0C7P4 283 aa10.22□□□□□ -0.77
SYNE1-211ENST00000413186 ZNF622Q969S3 477 aaKnown RBP eCLIP10.22□□□□□ -0.77
SYNE1-211ENST00000413186 RAI14Q9P0K7 980 aa10.22□□□□□ -0.77
SYNE1-211ENST00000413186 CTNNA3Q9UI47 895 aa10.21□□□□□ -0.77
SYNE1-211ENST00000413186 C6orf229H3BNL8 230 aa10.21□□□□□ -0.77
SYNE1-211ENST00000413186 JARID2Q92833 1246 aaPredicted RBP10.21□□□□□ -0.77
SYNE1-211ENST00000413186 ZBTB7BO15156 539 aaPredicted RBP10.21□□□□□ -0.78
SYNE1-211ENST00000413186 BACH2Q9BYV9 841 aa10.21□□□□□ -0.78
SYNE1-211ENST00000413186 PDE8AO60658 829 aa10.21□□□□□ -0.78
SYNE1-211ENST00000413186 TRIM37O94972 964 aa10.21□□□□□ -0.78
SYNE1-211ENST00000413186 MAP3K12Q12852 859 aa10.21□□□□□ -0.78
SYNE1-211ENST00000413186 GCKRQ14397 625 aa10.21□□□□□ -0.78
SYNE1-211ENST00000413186 SART3Q15020 963 aaKnown RBP10.21□□□□□ -0.78
SYNE1-211ENST00000413186 TTF1Q15361 905 aaPredicted RBP10.21□□□□□ -0.78
SYNE1-211ENST00000413186 CEP85Q6P2H3 762 aa10.21□□□□□ -0.78
SYNE1-211ENST00000413186 SLF2Q8IX21 1173 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms