RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 STRN4Q9NRL3 753 aa24.66■■□□□ 1.54
USP39-204ENST00000409766 CHMLP26374 656 aa24.65■■□□□ 1.54
USP39-204ENST00000409766 PIP4K2AP48426 406 aaPredicted RBP24.64■■□□□ 1.53
USP39-204ENST00000409766 EVA1CP58658 441 aa24.64■■□□□ 1.53
USP39-204ENST00000409766 GCKRQ14397 625 aa24.64■■□□□ 1.53
USP39-204ENST00000409766 BICC1Q9H694 974 aaKnown RBP24.64■■□□□ 1.53
USP39-204ENST00000409766 PAPPAQ13219 1627 aa24.63■■□□□ 1.53
USP39-204ENST00000409766 MYD88Q99836 296 aa24.63■■□□□ 1.53
USP39-204ENST00000409766 AK9Q5TCS8 1911 aa24.63■■□□□ 1.53
USP39-204ENST00000409766 USP42Q9H9J4 1324 aaKnown RBP24.63■■□□□ 1.53
USP39-204ENST00000409766 ARFGEF2Q9Y6D5 1785 aa24.63■■□□□ 1.53
USP39-204ENST00000409766 OS9Q13438 667 aaPredicted RBP24.62■■□□□ 1.53
USP39-204ENST00000409766 PA2G4Q9UQ80 394 aaKnown RBP24.62■■□□□ 1.53
USP39-204ENST00000409766 ERC1Q8IUD2 1116 aa24.61■■□□□ 1.53
USP39-204ENST00000409766 ROBO1Q9Y6N7 1651 aa24.61■■□□□ 1.53
USP39-204ENST00000409766 KCPQ6ZWJ8 1503 aa24.61■■□□□ 1.53
USP39-204ENST00000409766 DDX54Q8TDD1 881 aaKnown RBP24.61■■□□□ 1.53
USP39-204ENST00000409766 ERBB4Q15303 1308 aa24.6■■□□□ 1.53
USP39-204ENST00000409766 CLASRPQ8N2M8 674 aaKnown RBP24.6■■□□□ 1.53
USP39-204ENST00000409766 AFDNP55196 1824 aaKnown RBP24.6■■□□□ 1.53
USP39-204ENST00000409766 TTC41PQ6P2S7 1318 aa24.59■■□□□ 1.53
USP39-204ENST00000409766 GSE1Q14687 1217 aa24.59■■□□□ 1.53
USP39-204ENST00000409766 CIZ1Q9ULV3 898 aaPredicted RBP24.59■■□□□ 1.53
USP39-204ENST00000409766 NBPF26B4DH59 902 aa24.57■■□□□ 1.52
USP39-204ENST00000409766 NBPF14Q5TI25 921 aa24.57■■□□□ 1.52
USP39-204ENST00000409766 NBPF10Q6P3W6 841 aaKnown RBP24.57■■□□□ 1.52
USP39-204ENST00000409766 NBPF15Q8N660 670 aa24.57■■□□□ 1.52
USP39-204ENST00000409766 PLBD2Q8NHP8 589 aa24.57■■□□□ 1.52
USP39-204ENST00000409766 TNS2Q63HR2 1409 aa24.57■■□□□ 1.52
USP39-204ENST00000409766 TOGARAM1Q9Y4F4 1720 aa24.56■■□□□ 1.52
USP39-204ENST00000409766 HSP90AA1P07900 732 aaKnown RBP24.56■■□□□ 1.52
USP39-204ENST00000409766 EPHA10Q5JZY3 1008 aa24.56■■□□□ 1.52
USP39-204ENST00000409766 AHDC1Q5TGY3 1603 aaPredicted RBP24.55■■□□□ 1.52
USP39-204ENST00000409766 GLRX3O76003 335 aaKnown RBP24.55■■□□□ 1.52
USP39-204ENST00000409766 SASH1O94885 1247 aa24.55■■□□□ 1.52
USP39-204ENST00000409766 MAP4K4O95819 1239 aaPredicted RBP24.55■■□□□ 1.52
USP39-204ENST00000409766 COL15A1P39059 1388 aa24.54■■□□□ 1.52
USP39-204ENST00000409766 CNTROBQ8N137 903 aa24.54■■□□□ 1.52
USP39-204ENST00000409766 BTG4Q9NY30 223 aa24.54■■□□□ 1.52
USP39-204ENST00000409766 MCM4P33991 863 aa24.54■■□□□ 1.52
USP39-204ENST00000409766 G3BP1Q13283 466 aaKnown RBP eCLIP24.54■■□□□ 1.52
USP39-204ENST00000409766 ANO2Q9NQ90 1003 aa24.54■■□□□ 1.52
USP39-204ENST00000409766 EPB41L2O43491 1005 aaKnown RBP24.53■■□□□ 1.52
USP39-204ENST00000409766 ST18O60284 1047 aa24.53■■□□□ 1.52
USP39-204ENST00000409766 IL25Q9H293 177 aa24.53■■□□□ 1.52
USP39-204ENST00000409766 ECHDC1Q9NTX5 307 aa24.53■■□□□ 1.52
USP39-204ENST00000409766 IFIT2P09913 472 aaKnown RBP24.52■■□□□ 1.52
USP39-204ENST00000409766 COL14A1Q05707 1796 aaKnown RBP24.52■■□□□ 1.52
USP39-204ENST00000409766 NUP188Q5SRE5 1749 aa24.52■■□□□ 1.52
USP39-204ENST00000409766 ATP5J2-PTCD1G3V325 749 aa24.52■■□□□ 1.52
USP39-204ENST00000409766 PTCD1O75127 700 aaKnown RBP24.52■■□□□ 1.52
USP39-204ENST00000409766 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP24.52■■□□□ 1.52
USP39-204ENST00000409766 MCCP23508 829 aa24.51■■□□□ 1.51
USP39-204ENST00000409766 AACSQ86V21 672 aa24.51■■□□□ 1.51
USP39-204ENST00000409766 FOXD4L1Q9NU39 408 aa24.51■■□□□ 1.51
USP39-204ENST00000409766 A1BGP04217 495 aa24.51■■□□□ 1.51
USP39-204ENST00000409766 ANAPC15P60006 121 aa24.51■■□□□ 1.51
USP39-204ENST00000409766 RABL6Q3YEC7 729 aaPredicted RBP24.51■■□□□ 1.51
USP39-204ENST00000409766 UBE3BQ7Z3V4 1068 aa24.51■■□□□ 1.51
USP39-204ENST00000409766 IL17RAQ96F46 866 aa24.51■■□□□ 1.51
USP39-204ENST00000409766 GPATCH3Q96I76 525 aa24.51■■□□□ 1.51
USP39-204ENST00000409766 CASP7P55210 303 aa24.5■■□□□ 1.51
USP39-204ENST00000409766 RAB3GAP1Q15042 981 aa24.5■■□□□ 1.51
USP39-204ENST00000409766 COL22A1Q8NFW1 1626 aaPredicted RBP24.49■■□□□ 1.51
USP39-204ENST00000409766 A0A087WZG4 1122 aa24.49■■□□□ 1.51
USP39-204ENST00000409766 KLHDC4Q8TBB5 520 aa24.49■■□□□ 1.51
USP39-204ENST00000409766 JARID2Q92833 1246 aaPredicted RBP24.49■■□□□ 1.51
USP39-204ENST00000409766 EAF2Q96CJ1 260 aaPredicted RBP24.49■■□□□ 1.51
USP39-204ENST00000409766 SGSM2O43147 1006 aa24.49■■□□□ 1.51
USP39-204ENST00000409766 TTLL7Q6ZT98 887 aa24.49■■□□□ 1.51
USP39-204ENST00000409766 SIL1Q9H173 461 aa24.49■■□□□ 1.51
USP39-204ENST00000409766 COPRSQ9NQ92 184 aa24.49■■□□□ 1.51
USP39-204ENST00000409766 TMOD3Q9NYL9 352 aa24.49■■□□□ 1.51
USP39-204ENST00000409766 PALD1Q9ULE6 856 aa24.49■■□□□ 1.51
USP39-204ENST00000409766 RFX5P48382 616 aaPredicted RBP24.48■■□□□ 1.51
USP39-204ENST00000409766 DISP2A7MBM2 1401 aa24.48■■□□□ 1.51
USP39-204ENST00000409766 TNPO1Q92973 898 aaKnown RBP24.47■■□□□ 1.51
USP39-204ENST00000409766 COL16A1Q07092 1604 aaPredicted RBP24.46■■□□□ 1.51
USP39-204ENST00000409766 H7C1W4 665 aa24.45■■□□□ 1.51
USP39-204ENST00000409766 PTPN12Q05209 780 aaKnown RBP24.45■■□□□ 1.51
USP39-204ENST00000409766 ITGB4P16144 1822 aa24.45■■□□□ 1.51
USP39-204ENST00000409766 NEK4P51957 841 aa24.45■■□□□ 1.5
USP39-204ENST00000409766 HSPA4P34932 840 aa24.44■■□□□ 1.5
USP39-204ENST00000409766 PIGBQ92521 554 aa24.44■■□□□ 1.5
USP39-204ENST00000409766 CCDC8Q9H0W5 538 aaPredicted RBP24.44■■□□□ 1.5
USP39-204ENST00000409766 TJP1Q07157 1748 aa24.44■■□□□ 1.5
USP39-204ENST00000409766 EVI5LQ96CN4 794 aa24.44■■□□□ 1.5
USP39-204ENST00000409766 RAD50Q92878 1312 aa24.43■■□□□ 1.5
USP39-204ENST00000409766 PLCH1Q4KWH8 1693 aa24.43■■□□□ 1.5
USP39-204ENST00000409766 CWC25Q9NXE8 425 aaPredicted RBP24.43■■□□□ 1.5
USP39-204ENST00000409766 TLR7Q9NYK1 1049 aaKnown RBP24.43■■□□□ 1.5
USP39-204ENST00000409766 CWC27Q6UX04 472 aaKnown RBP24.42■■□□□ 1.5
USP39-204ENST00000409766 VSIG10Q8N0Z9 540 aa24.42■■□□□ 1.5
USP39-204ENST00000409766 LSG1Q9H089 658 aaKnown RBP24.42■■□□□ 1.5
USP39-204ENST00000409766 ASAP1Q9ULH1 1129 aa24.42■■□□□ 1.5
USP39-204ENST00000409766 MCM2P49736 904 aa24.41■■□□□ 1.5
USP39-204ENST00000409766 FOXO4P98177 505 aa24.41■■□□□ 1.5
USP39-204ENST00000409766 ZBTB3Q9H5J0 574 aa24.41■■□□□ 1.5
USP39-204ENST00000409766 DIAPH3Q9NSV4 1193 aa24.41■■□□□ 1.5
USP39-204ENST00000409766 DDX11L8A8MPP1 907 aa24.4■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms