RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 TEX13AQ9BXU3 409 aaPredicted RBP22.6■■□□□ 1.21
CHMP3-203ENST00000409225 CAMTA2O94983 1202 aa22.59■■□□□ 1.21
CHMP3-203ENST00000409225 A1BGP04217 495 aa22.59■■□□□ 1.21
CHMP3-203ENST00000409225 TEFQ10587 303 aa22.59■■□□□ 1.21
CHMP3-203ENST00000409225 AMER1Q5JTC6 1135 aaPredicted RBP22.59■■□□□ 1.21
CHMP3-203ENST00000409225 L3MBTL3Q96JM7 780 aaPredicted RBP22.59■■□□□ 1.21
CHMP3-203ENST00000409225 DIAPH1O60610 1272 aaKnown RBP22.58■■□□□ 1.21
CHMP3-203ENST00000409225 SCN4AP35499 1836 aa22.57■■□□□ 1.2
CHMP3-203ENST00000409225 LBX1P52954 281 aa22.57■■□□□ 1.2
CHMP3-203ENST00000409225 CLEC11AQ9Y240 323 aa22.57■■□□□ 1.2
CHMP3-203ENST00000409225 ARFGEF2Q9Y6D5 1785 aa22.57■■□□□ 1.2
CHMP3-203ENST00000409225 ZNF541Q9H0D2 1346 aa22.57■■□□□ 1.2
CHMP3-203ENST00000409225 ITGBL1O95965 494 aaPredicted RBP22.56■■□□□ 1.2
CHMP3-203ENST00000409225 CCDC93Q567U6 631 aa22.56■■□□□ 1.2
CHMP3-203ENST00000409225 IL17REQ8NFR9 667 aa22.56■■□□□ 1.2
CHMP3-203ENST00000409225 WBP1LQ9NX94 342 aa22.56■■□□□ 1.2
CHMP3-203ENST00000409225 DZIP3Q86Y13 1208 aaKnown RBP22.55■■□□□ 1.2
CHMP3-203ENST00000409225 FMNL2Q96PY5 1086 aa22.55■■□□□ 1.2
CHMP3-203ENST00000409225 ZNF277Q9NRM2 450 aaPredicted RBP22.55■■□□□ 1.2
CHMP3-203ENST00000409225 NBPF5PQ86XG9 351 aaPredicted RBP22.54■■□□□ 1.2
CHMP3-203ENST00000409225 C7orf43Q8WVR3 580 aa22.54■■□□□ 1.2
CHMP3-203ENST00000409225 HACL1Q9UJ83 578 aa22.54■■□□□ 1.2
CHMP3-203ENST00000409225 BCORQ6W2J9 1755 aa22.53■■□□□ 1.2
CHMP3-203ENST00000409225 GNAT3A8MTJ3 354 aa22.53■■□□□ 1.2
CHMP3-203ENST00000409225 PIP4K2AP48426 406 aaPredicted RBP22.53■■□□□ 1.2
CHMP3-203ENST00000409225 FKBP4Q02790 459 aaKnown RBP eCLIP22.53■■□□□ 1.2
CHMP3-203ENST00000409225 EPHX2P34913 555 aa22.52■■□□□ 1.2
CHMP3-203ENST00000409225 TRIM26Q12899 539 aaPredicted RBP22.52■■□□□ 1.2
CHMP3-203ENST00000409225 OLFM4Q6UX06 510 aa22.52■■□□□ 1.2
CHMP3-203ENST00000409225 SIPA1L3O60292 1781 aaPredicted RBP22.51■■□□□ 1.19
CHMP3-203ENST00000409225 KCNQ3O43525 872 aa22.51■■□□□ 1.19
CHMP3-203ENST00000409225 NPR1P16066 1061 aa22.51■■□□□ 1.19
CHMP3-203ENST00000409225 GAS2L2Q8NHY3 880 aa22.51■■□□□ 1.19
CHMP3-203ENST00000409225 U2SURPO15042 1029 aaKnown RBP22.5■■□□□ 1.19
CHMP3-203ENST00000409225 HSPA8P11142 646 aaKnown RBP22.5■■□□□ 1.19
CHMP3-203ENST00000409225 DEFB115Q30KQ5 88 aa22.5■■□□□ 1.19
CHMP3-203ENST00000409225 MAP1SQ66K74 1059 aaPredicted RBP22.5■■□□□ 1.19
CHMP3-203ENST00000409225 RNF123Q5XPI4 1314 aa22.5■■□□□ 1.19
CHMP3-203ENST00000409225 ADAMTSL1Q8N6G6 1762 aa22.49■■□□□ 1.19
CHMP3-203ENST00000409225 RASSF10A6NK89 507 aa22.49■■□□□ 1.19
CHMP3-203ENST00000409225 CC2D1BQ5T0F9 858 aaKnown RBP22.49■■□□□ 1.19
CHMP3-203ENST00000409225 CNTROBQ8N137 903 aa22.49■■□□□ 1.19
CHMP3-203ENST00000409225 ABHD8Q96I13 439 aa22.49■■□□□ 1.19
CHMP3-203ENST00000409225 BTBD11A6QL63 1104 aa22.48■■□□□ 1.19
CHMP3-203ENST00000409225 PNMA8AQ86V59 439 aaPredicted RBP22.48■■□□□ 1.19
CHMP3-203ENST00000409225 ABT1Q9ULW3 272 aaKnown RBP22.48■■□□□ 1.19
CHMP3-203ENST00000409225 USP16Q9Y5T5 823 aa22.48■■□□□ 1.19
CHMP3-203ENST00000409225 SLC34A2O95436 690 aa22.47■■□□□ 1.19
CHMP3-203ENST00000409225 FAM161AQ3B820 660 aa22.47■■□□□ 1.19
CHMP3-203ENST00000409225 RTKN2Q8IZC4 609 aa22.47■■□□□ 1.19
CHMP3-203ENST00000409225 ZNF652Q9Y2D9 606 aa22.47■■□□□ 1.19
CHMP3-203ENST00000409225 WDR33Q9C0J8 1336 aaKnown RBP22.47■■□□□ 1.19
CHMP3-203ENST00000409225 CLSPNQ9HAW4 1339 aa22.47■■□□□ 1.19
CHMP3-203ENST00000409225 FAM177BA6PVY3 158 aa22.46■■□□□ 1.19
CHMP3-203ENST00000409225 IARSP41252 1262 aaKnown RBP22.46■■□□□ 1.19
CHMP3-203ENST00000409225 CLEC4GQ6UXB4 293 aa22.46■■□□□ 1.19
CHMP3-203ENST00000409225 PCGF6Q9BYE7 350 aa22.46■■□□□ 1.19
CHMP3-203ENST00000409225 PRAMEF22A3QJZ6 481 aa22.45■■□□□ 1.18
CHMP3-203ENST00000409225 KLRG2A4D1S0 409 aaPredicted RBP22.45■■□□□ 1.18
CHMP3-203ENST00000409225 MAP2K1Q02750 393 aaPredicted RBP22.45■■□□□ 1.18
CHMP3-203ENST00000409225 SYNE4Q8N205 404 aa22.45■■□□□ 1.18
CHMP3-203ENST00000409225 CEMIPQ8WUJ3 1361 aa22.45■■□□□ 1.18
CHMP3-203ENST00000409225 COL3A1P02461 1466 aaPredicted RBP22.45■■□□□ 1.18
CHMP3-203ENST00000409225 FZD9O00144 591 aa22.44■■□□□ 1.18
CHMP3-203ENST00000409225 CNGB1Q14028 1251 aaPredicted RBP22.44■■□□□ 1.18
CHMP3-203ENST00000409225 TPTE2Q6XPS3 522 aa22.44■■□□□ 1.18
CHMP3-203ENST00000409225 NIP7Q9Y221 180 aaKnown RBP eCLIP22.44■■□□□ 1.18
CHMP3-203ENST00000409225 GPC2Q8N158 579 aa22.43■■□□□ 1.18
CHMP3-203ENST00000409225 KIF7Q2M1P5 1343 aa22.42■■□□□ 1.18
CHMP3-203ENST00000409225 PAXIP1Q6ZW49 1069 aaPredicted RBP22.42■■□□□ 1.18
CHMP3-203ENST00000409225 ALDH1B1P30837 517 aa22.41■■□□□ 1.18
CHMP3-203ENST00000409225 JDP2Q8WYK2 163 aa22.41■■□□□ 1.18
CHMP3-203ENST00000409225 DDX21Q9NR30 783 aaKnown RBP eCLIP22.41■■□□□ 1.18
CHMP3-203ENST00000409225 GJA3Q9Y6H8 435 aa22.41■■□□□ 1.18
CHMP3-203ENST00000409225 PER1O15534 1290 aaPredicted RBP22.4■■□□□ 1.18
CHMP3-203ENST00000409225 GRM1Q13255 1194 aa22.4■■□□□ 1.18
CHMP3-203ENST00000409225 PHACTR3Q96KR7 559 aa22.4■■□□□ 1.18
CHMP3-203ENST00000409225 SNRPA1P09661 255 aaKnown RBP22.39■■□□□ 1.17
CHMP3-203ENST00000409225 GTF2E1P29083 439 aaPredicted RBP22.39■■□□□ 1.17
CHMP3-203ENST00000409225 FMR1Q06787 632 aaKnown RBP eCLIP22.39■■□□□ 1.17
CHMP3-203ENST00000409225 CCDC85CA6NKD9 419 aa22.38■■□□□ 1.17
CHMP3-203ENST00000409225 NBPF26B4DH59 902 aa22.38■■□□□ 1.17
CHMP3-203ENST00000409225 LMOD1P29536 600 aaPredicted RBP22.38■■□□□ 1.17
CHMP3-203ENST00000409225 PRKAR2BP31323 418 aa22.38■■□□□ 1.17
CHMP3-203ENST00000409225 EIF6P56537 245 aaKnown RBP22.38■■□□□ 1.17
CHMP3-203ENST00000409225 NBPF10Q6P3W6 841 aaKnown RBP22.38■■□□□ 1.17
CHMP3-203ENST00000409225 NBPF15Q8N660 670 aa22.38■■□□□ 1.17
CHMP3-203ENST00000409225 CAPNS2Q96L46 248 aa22.38■■□□□ 1.17
CHMP3-203ENST00000409225 PSMD1Q99460 953 aa22.38■■□□□ 1.17
CHMP3-203ENST00000409225 HLFQ16534 295 aa22.37■■□□□ 1.17
CHMP3-203ENST00000409225 BEGAINQ9BUH8 593 aa22.37■■□□□ 1.17
CHMP3-203ENST00000409225 CYP4F22Q6NT55 531 aa22.36■■□□□ 1.17
CHMP3-203ENST00000409225 LTBP1Q14766 1721 aa22.36■■□□□ 1.17
CHMP3-203ENST00000409225 COL4A5P29400 1685 aa22.36■■□□□ 1.17
CHMP3-203ENST00000409225 SNED1Q8TER0 1413 aa22.35■■□□□ 1.17
CHMP3-203ENST00000409225 EPS15P42566 896 aa22.35■■□□□ 1.17
CHMP3-203ENST00000409225 ECE1P42892 770 aa22.35■■□□□ 1.17
CHMP3-203ENST00000409225 MCM10Q7L590 875 aa22.35■■□□□ 1.17
CHMP3-203ENST00000409225 GPR101Q96P66 508 aaPredicted RBP22.35■■□□□ 1.17
CHMP3-203ENST00000409225 THSD7BQ9C0I4 1608 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms