RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 CNNM3Q8NE01 707 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 TIGD1Q96MW7 591 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 CNNM2Q9H8M5 875 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 SCAF11Q99590 1463 aaKnown RBP7.02□□□□□ -1.29
SCN1A-203ENST00000409050 NSD3Q9BZ95 1437 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 CCDC194A0A1B0GVG4 234 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 HSPA4P34932 840 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 RARSP54136 660 aaKnown RBP7.02□□□□□ -1.29
SCN1A-203ENST00000409050 SNW1Q13573 536 aaKnown RBP7.02□□□□□ -1.29
SCN1A-203ENST00000409050 ERMNQ8TAM6 284 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 KIAA1524Q8TCG1 905 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 CDCA7LQ96GN5 454 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 LRP2BPQ9P2M1 347 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 BRPF3Q9ULD4 1205 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 USH1CQ9Y6N9 552 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 PIK3R4Q99570 1358 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 FAM193AP78312 1265 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 KRT83P78385 493 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 JAKMIP2Q96AA8 810 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 IQCDQ96DY2 449 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 NAPBQ9H115 298 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 DBF4Q9UBU7 674 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-203ENST00000409050 SLC12A7Q9Y666 1083 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 STK24Q9Y6E0 443 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 THOC2Q8NI27 1593 aaKnown RBP7.01□□□□□ -1.29
SCN1A-203ENST00000409050 RAD50Q92878 1312 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-203ENST00000409050 ANKLE2Q86XL3 938 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 FERMT2Q96AC1 680 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 ECHDC1Q9NTX5 307 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 GSTTP1A0A1W2PQM5 241 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 SYCE3A1L190 88 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 ACTN2P35609 894 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 GSTO1P78417 241 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 LRSAM1Q6UWE0 723 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 DDX46Q7L014 1031 aaKnown RBP7.01□□□□□ -1.29
SCN1A-203ENST00000409050 CENPHQ9H3R5 247 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 STRN4Q9NRL3 753 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 PRG4Q92954 1404 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-203ENST00000409050 ZNF213O14771 459 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 ATP2A1O14983 1001 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 DUSP27Q5VZP5 1158 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 RAI14Q9P0K7 980 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 DNMBPQ6XZF7 1577 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 CAMSAP2Q08AD1 1489 aa7.01□□□□□ -1.29
SCN1A-203ENST00000409050 BCAR3O75815 825 aa7□□□□□ -1.29
SCN1A-203ENST00000409050 CALM1P0DP23 149 aa7□□□□□ -1.29
SCN1A-203ENST00000409050 CALM2P0DP24 149 aa7□□□□□ -1.29
SCN1A-203ENST00000409050 CALM3P0DP25 149 aa7□□□□□ -1.29
SCN1A-203ENST00000409050 PROSER2Q86WR7 435 aaPredicted RBP7□□□□□ -1.29
SCN1A-203ENST00000409050 PLCD4Q9BRC7 762 aa7□□□□□ -1.29
SCN1A-203ENST00000409050 ZHX3Q9H4I2 956 aa7□□□□□ -1.29
SCN1A-203ENST00000409050 NAIPQ13075 1403 aa7□□□□□ -1.29
SCN1A-203ENST00000409050 STX6O43752 255 aa7□□□□□ -1.29
SCN1A-203ENST00000409050 FAM69CQ0P6D2 419 aa7□□□□□ -1.29
SCN1A-203ENST00000409050 ZGPATQ8N5A5 531 aaKnown RBP7□□□□□ -1.29
SCN1A-203ENST00000409050 ANKS4BQ8N8V4 417 aa7□□□□□ -1.29
SCN1A-203ENST00000409050 CWC27Q6UX04 472 aaKnown RBP7□□□□□ -1.29
SCN1A-203ENST00000409050 CEP63Q96MT8 703 aa7□□□□□ -1.29
SCN1A-203ENST00000409050 NUP88Q99567 741 aaPredicted RBP7□□□□□ -1.29
SCN1A-203ENST00000409050 KRT23Q9C075 422 aa7□□□□□ -1.29
SCN1A-203ENST00000409050 ARFGAP3Q9NP61 516 aa7□□□□□ -1.29
SCN1A-203ENST00000409050 SEPT11Q9NVA2 429 aaKnown RBP7□□□□□ -1.29
SCN1A-203ENST00000409050 HOXA7P31268 230 aaPredicted RBP7□□□□□ -1.29
SCN1A-203ENST00000409050 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7□□□□□ -1.29
SCN1A-203ENST00000409050 CCDC110Q8TBZ0 833 aa7□□□□□ -1.29
SCN1A-203ENST00000409050 FAM200AQ8TCP9 573 aa7□□□□□ -1.29
SCN1A-203ENST00000409050 INTS4Q96HW7 963 aaKnown RBP7□□□□□ -1.29
SCN1A-203ENST00000409050 CEBPZQ03701 1054 aaKnown RBP7□□□□□ -1.29
SCN1A-203ENST00000409050 C10orf67Q8IYJ2 551 aa7□□□□□ -1.29
SCN1A-203ENST00000409050 TMEM57Q8N5G2 664 aa7□□□□□ -1.29
SCN1A-203ENST00000409050 TBC1D5Q92609 795 aa7□□□□□ -1.29
SCN1A-203ENST00000409050 CTAGE15A4D2H0 777 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 ALDH1L1O75891 902 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 CTAGE8P0CG41 777 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 RBM10P98175 930 aaKnown RBP6.99□□□□□ -1.29
SCN1A-203ENST00000409050 PDE4BQ07343 736 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 TRIM14Q14142 442 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 SPECC1Q5M775 1068 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 CTAGE6Q86UF2 777 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 CTAGE4Q8IX94 777 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 TBC1D32Q96NH3 1257 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 RBM42Q9BTD8 480 aaKnown RBP6.99□□□□□ -1.29
SCN1A-203ENST00000409050 RAD54L2Q9Y4B4 1467 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 ATP5DP30049 168 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 GRIPAP1Q4V328 841 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 METTL24Q5JXM2 366 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 CEP135Q66GS9 1140 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 NCOA7Q8NI08 942 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 PIBF1Q8WXW3 757 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 TSGA10Q9BZW7 698 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 CEP83Q9Y592 693 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 ZMYM3Q14202 1370 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 GOLGA8AA7E2F4 631 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 GOLGA8BA8MQT2 603 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 B4DLN1 442 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 TACC1O75410 805 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 ALDH3A1P30838 453 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 MRPL12P52815 198 aaKnown RBP6.99□□□□□ -1.29
SCN1A-203ENST00000409050 STK3Q13188 491 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms