RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 RAB11FIP3O75154 756 aa6.65□□□□□ -1.35
VPS41-203ENST00000395969 TRIM28Q13263 835 aaKnown RBP6.65□□□□□ -1.35
VPS41-203ENST00000395969 BEND3Q5T5X7 828 aa6.65□□□□□ -1.35
VPS41-203ENST00000395969 MCM10Q7L590 875 aa6.65□□□□□ -1.35
VPS41-203ENST00000395969 FTSJ3Q8IY81 847 aaKnown RBP6.65□□□□□ -1.35
VPS41-203ENST00000395969 ZNF219Q9P2Y4 722 aaPredicted RBP6.65□□□□□ -1.35
VPS41-203ENST00000395969 DBF4Q9UBU7 674 aaPredicted RBP6.65□□□□□ -1.35
VPS41-203ENST00000395969 TATP17735 454 aaPredicted RBP6.64□□□□□ -1.35
VPS41-203ENST00000395969 MRE11P49959 708 aa6.64□□□□□ -1.35
VPS41-203ENST00000395969 ATP8B2P98198 1209 aa6.64□□□□□ -1.35
VPS41-203ENST00000395969 BRD2P25440 801 aaKnown RBP6.64□□□□□ -1.35
VPS41-203ENST00000395969 FLIIQ13045 1269 aa6.64□□□□□ -1.35
VPS41-203ENST00000395969 CHD1LQ86WJ1 897 aa6.64□□□□□ -1.35
VPS41-203ENST00000395969 ISY1Q9ULR0 285 aaKnown RBP6.64□□□□□ -1.35
VPS41-203ENST00000395969 LRRC37AA6NMS7 1700 aa6.64□□□□□ -1.35
VPS41-203ENST00000395969 DUOX1Q9NRD9 1551 aa6.63□□□□□ -1.35
VPS41-203ENST00000395969 ESPNB1AK53 854 aa6.63□□□□□ -1.35
VPS41-203ENST00000395969 RABL6Q3YEC7 729 aaPredicted RBP6.63□□□□□ -1.35
VPS41-203ENST00000395969 SRCIN1Q9C0H9 1055 aa6.63□□□□□ -1.35
VPS41-203ENST00000395969 ATG3Q9NT62 314 aa6.63□□□□□ -1.35
VPS41-203ENST00000395969 PDZRN3Q9UPQ7 1066 aa6.63□□□□□ -1.35
VPS41-203ENST00000395969 LAMA4Q16363 1823 aa6.63□□□□□ -1.35
VPS41-203ENST00000395969 SPATA31A6Q5VVP1 1343 aa6.63□□□□□ -1.35
VPS41-203ENST00000395969 CYP27B1O15528 508 aa6.63□□□□□ -1.35
VPS41-203ENST00000395969 PLA2G12BQ9BX93 195 aa6.63□□□□□ -1.35
VPS41-203ENST00000395969 RTL9Q8NET4 1388 aa6.63□□□□□ -1.35
VPS41-203ENST00000395969 ABCC12Q96J65 1359 aa6.63□□□□□ -1.35
VPS41-203ENST00000395969 BTAF1O14981 1849 aa6.63□□□□□ -1.35
VPS41-203ENST00000395969 ZNF530Q6P9A1 599 aaPredicted RBP6.63□□□□□ -1.35
VPS41-203ENST00000395969 ZNF790Q6PG37 636 aa6.63□□□□□ -1.35
VPS41-203ENST00000395969 SNX21Q969T3 373 aa6.63□□□□□ -1.35
VPS41-203ENST00000395969 TBC1D32Q96NH3 1257 aa6.63□□□□□ -1.35
VPS41-203ENST00000395969 THUMPD2Q9BTF0 503 aaKnown RBP6.63□□□□□ -1.35
VPS41-203ENST00000395969 TEX13AQ9BXU3 409 aaPredicted RBP6.63□□□□□ -1.35
VPS41-203ENST00000395969 TNNQ9UQP3 1299 aa6.63□□□□□ -1.35
VPS41-203ENST00000395969 C4AP0C0L4 1744 aa6.62□□□□□ -1.35
VPS41-203ENST00000395969 C4BP0C0L5 1744 aa6.62□□□□□ -1.35
VPS41-203ENST00000395969 ATRNO75882 1429 aa6.62□□□□□ -1.35
VPS41-203ENST00000395969 SEC24BO95487 1268 aa6.62□□□□□ -1.35
VPS41-203ENST00000395969 MCM4P33991 863 aa6.62□□□□□ -1.35
VPS41-203ENST00000395969 C1orf141Q5JVX7 400 aa6.62□□□□□ -1.35
VPS41-203ENST00000395969 KSR2Q6VAB6 950 aa6.62□□□□□ -1.35
VPS41-203ENST00000395969 ZHX1Q9UKY1 873 aaPredicted RBP6.62□□□□□ -1.35
VPS41-203ENST00000395969 BCL9LQ86UU0 1499 aa6.62□□□□□ -1.35
VPS41-203ENST00000395969 CASP7P55210 303 aa6.62□□□□□ -1.35
VPS41-203ENST00000395969 AK7Q96M32 723 aa6.62□□□□□ -1.35
VPS41-203ENST00000395969 SLKQ9H2G2 1235 aaPredicted RBP6.62□□□□□ -1.35
VPS41-203ENST00000395969 HMMRO75330 724 aa6.61□□□□□ -1.35
VPS41-203ENST00000395969 IL2RBP14784 551 aa6.61□□□□□ -1.35
VPS41-203ENST00000395969 LMOD2Q6P5Q4 547 aa6.61□□□□□ -1.35
VPS41-203ENST00000395969 STK31Q9BXU1 1019 aa6.61□□□□□ -1.35
VPS41-203ENST00000395969 USP44Q9H0E7 712 aa6.61□□□□□ -1.35
VPS41-203ENST00000395969 MYH7P12883 1935 aa6.61□□□□□ -1.35
VPS41-203ENST00000395969 MAST2Q6P0Q8 1798 aa6.61□□□□□ -1.35
VPS41-203ENST00000395969 BTBD11A6QL63 1104 aa6.61□□□□□ -1.35
VPS41-203ENST00000395969 ONECUT3O60422 494 aaPredicted RBP6.61□□□□□ -1.35
VPS41-203ENST00000395969 DDIT3P35638 169 aa6.61□□□□□ -1.35
VPS41-203ENST00000395969 DCTN1Q14203 1278 aa6.61□□□□□ -1.35
VPS41-203ENST00000395969 LINS1Q8NG48 757 aa6.61□□□□□ -1.35
VPS41-203ENST00000395969 LGR6Q9HBX8 967 aa6.61□□□□□ -1.35
VPS41-203ENST00000395969 PRDM10Q9NQV6 1147 aa6.61□□□□□ -1.35
VPS41-203ENST00000395969 SPATA31A1Q5TZJ5 1347 aa6.61□□□□□ -1.35
VPS41-203ENST00000395969 GNAI2P04899 355 aa6.61□□□□□ -1.35
VPS41-203ENST00000395969 SNRPA1P09661 255 aaKnown RBP6.61□□□□□ -1.35
VPS41-203ENST00000395969 TERF1P54274 439 aa6.61□□□□□ -1.35
VPS41-203ENST00000395969 RAPGEF4Q8WZA2 1011 aa6.61□□□□□ -1.35
VPS41-203ENST00000395969 KCNB2Q92953 911 aa6.61□□□□□ -1.35
VPS41-203ENST00000395969 GRPEL1Q9HAV7 217 aa6.61□□□□□ -1.35
VPS41-203ENST00000395969 SLC24A3Q9HC58 644 aa6.61□□□□□ -1.35
VPS41-203ENST00000395969 SPATA31A5Q5VU36 1347 aa6.6□□□□□ -1.35
VPS41-203ENST00000395969 SPATA31A7Q8IWB4 1347 aa6.6□□□□□ -1.35
VPS41-203ENST00000395969 ITPRIPQ8IWB1 547 aa6.6□□□□□ -1.35
VPS41-203ENST00000395969 FNBP4Q8N3X1 1017 aaPredicted RBP6.6□□□□□ -1.35
VPS41-203ENST00000395969 TBC1D2Q9BYX2 928 aa6.6□□□□□ -1.35
VPS41-203ENST00000395969 GPR108Q9NPR9 543 aa6.6□□□□□ -1.35
VPS41-203ENST00000395969 TTC41PQ6P2S7 1318 aa6.6□□□□□ -1.35
VPS41-203ENST00000395969 HSPA2P54652 639 aa6.6□□□□□ -1.35
VPS41-203ENST00000395969 HSP90AB4PQ58FF6 505 aa6.6□□□□□ -1.35
VPS41-203ENST00000395969 PLEKHM2Q8IWE5 1019 aa6.6□□□□□ -1.35
VPS41-203ENST00000395969 CDHR2Q9BYE9 1310 aa6.6□□□□□ -1.35
VPS41-203ENST00000395969 TRAK2O60296 914 aa6.59□□□□□ -1.35
VPS41-203ENST00000395969 CANXP27824 592 aaKnown RBP6.59□□□□□ -1.35
VPS41-203ENST00000395969 CLEC17AQ6ZS10 378 aa6.59□□□□□ -1.35
VPS41-203ENST00000395969 PLCD3Q8N3E9 789 aa6.59□□□□□ -1.35
VPS41-203ENST00000395969 ZCRB1Q8TBF4 217 aaKnown RBP6.59□□□□□ -1.35
VPS41-203ENST00000395969 FMNL2Q96PY5 1086 aa6.59□□□□□ -1.35
VPS41-203ENST00000395969 LTBP1Q14766 1721 aa6.59□□□□□ -1.35
VPS41-203ENST00000395969 UBR3Q6ZT12 1888 aa6.59□□□□□ -1.35
VPS41-203ENST00000395969 ATXN8OSP0DMR3 200 aa6.59□□□□□ -1.35
VPS41-203ENST00000395969 TTC22Q5TAA0 569 aa6.59□□□□□ -1.35
VPS41-203ENST00000395969 RGS22Q8NE09 1264 aa6.59□□□□□ -1.35
VPS41-203ENST00000395969 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.59□□□□□ -1.35
VPS41-203ENST00000395969 DNAAF4Q8WXU2 420 aa6.59□□□□□ -1.35
VPS41-203ENST00000395969 METTL22Q9BUU2 404 aaPredicted RBP6.59□□□□□ -1.35
VPS41-203ENST00000395969 TIAM2Q8IVF5 1701 aa6.59□□□□□ -1.36
VPS41-203ENST00000395969 NUTM2FA1L443 756 aa6.59□□□□□ -1.36
VPS41-203ENST00000395969 G2E3Q7L622 706 aa6.59□□□□□ -1.36
VPS41-203ENST00000395969 PLBD2Q8NHP8 589 aa6.59□□□□□ -1.36
VPS41-203ENST00000395969 TNS1Q9HBL0 1735 aaKnown RBP6.58□□□□□ -1.36
VPS41-203ENST00000395969 HMGB2P26583 209 aaKnown RBP6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms