RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 EPRSP07814 1512 aaKnown RBP14.75□□□□□ -0.05
CCDC88C-204ENST00000389857 TAF7Q15545 349 aaPredicted RBP14.75□□□□□ -0.05
CCDC88C-204ENST00000389857 HYPKQ9NX55 129 aa14.75□□□□□ -0.05
CCDC88C-204ENST00000389857 CCDC172P0C7W6 258 aa14.74□□□□□ -0.05
CCDC88C-204ENST00000389857 CCDC40Q4G0X9 1142 aa14.74□□□□□ -0.05
CCDC88C-204ENST00000389857 HLTFQ14527 1009 aaKnown RBP eCLIP14.74□□□□□ -0.05
CCDC88C-204ENST00000389857 WDR78Q5VTH9 848 aa14.74□□□□□ -0.05
CCDC88C-204ENST00000389857 FERMT3Q86UX7 667 aa14.74□□□□□ -0.05
CCDC88C-204ENST00000389857 TMCO5BA8MYB1 307 aa14.74□□□□□ -0.05
CCDC88C-204ENST00000389857 SYCP3Q8IZU3 236 aa14.74□□□□□ -0.05
CCDC88C-204ENST00000389857 ABCC11Q96J66 1382 aa14.74□□□□□ -0.05
CCDC88C-204ENST00000389857 CTR9Q6PD62 1173 aa14.74□□□□□ -0.05
CCDC88C-204ENST00000389857 DDX19AQ9NUU7 478 aaKnown RBP14.74□□□□□ -0.05
CCDC88C-204ENST00000389857 PKNOX2Q96KN3 472 aa14.74□□□□□ -0.05
CCDC88C-204ENST00000389857 DNA2P51530 1060 aa14.73□□□□□ -0.05
CCDC88C-204ENST00000389857 LMAN1P49257 510 aa14.73□□□□□ -0.05
CCDC88C-204ENST00000389857 LIMCH1Q9UPQ0 1083 aa14.73□□□□□ -0.05
CCDC88C-204ENST00000389857 IKBKGQ9Y6K9 419 aa14.73□□□□□ -0.05
CCDC88C-204ENST00000389857 LIG1P18858 919 aa14.73□□□□□ -0.05
CCDC88C-204ENST00000389857 EHBP1Q8NDI1 1231 aa14.73□□□□□ -0.05
CCDC88C-204ENST00000389857 NUDT16Q96DE0 195 aaKnown RBP14.73□□□□□ -0.05
CCDC88C-204ENST00000389857 TNNT1P13805 278 aa14.73□□□□□ -0.05
CCDC88C-204ENST00000389857 PDE4BQ07343 736 aa14.73□□□□□ -0.05
CCDC88C-204ENST00000389857 DDX23Q9BUQ8 820 aaKnown RBP14.73□□□□□ -0.05
CCDC88C-204ENST00000389857 CCDC141Q6ZP82 1450 aa14.72□□□□□ -0.05
CCDC88C-204ENST00000389857 SLFN5Q08AF3 891 aa14.72□□□□□ -0.05
CCDC88C-204ENST00000389857 NKTRP30414 1462 aaKnown RBP14.72□□□□□ -0.05
CCDC88C-204ENST00000389857 PRC1O43663 620 aa14.72□□□□□ -0.05
CCDC88C-204ENST00000389857 ACTN2P35609 894 aa14.72□□□□□ -0.05
CCDC88C-204ENST00000389857 EVI5LQ96CN4 794 aa14.72□□□□□ -0.05
CCDC88C-204ENST00000389857 TRMT112Q9UI30 125 aaKnown RBP14.72□□□□□ -0.05
CCDC88C-204ENST00000389857 ZC3H6P61129 1189 aaKnown RBP14.72□□□□□ -0.05
CCDC88C-204ENST00000389857 TICAM2Q86XR7 235 aa14.72□□□□□ -0.05
CCDC88C-204ENST00000389857 FSIP1Q8NA03 581 aa14.72□□□□□ -0.05
CCDC88C-204ENST00000389857 GUCY1B3Q02153 619 aa14.72□□□□□ -0.05
CCDC88C-204ENST00000389857 TBC1D5Q92609 795 aa14.72□□□□□ -0.05
CCDC88C-204ENST00000389857 CALCOCO1Q9P1Z2 691 aa14.72□□□□□ -0.05
CCDC88C-204ENST00000389857 SPTY2D1Q68D10 685 aaPredicted RBP14.71□□□□□ -0.05
CCDC88C-204ENST00000389857 TTC12Q9H892 705 aaPredicted RBP14.71□□□□□ -0.05
CCDC88C-204ENST00000389857 BAG3O95817 575 aa14.71□□□□□ -0.05
CCDC88C-204ENST00000389857 TCERG1LQ5VWI1 586 aa14.71□□□□□ -0.05
CCDC88C-204ENST00000389857 KAT14Q9H8E8 782 aa14.71□□□□□ -0.05
CCDC88C-204ENST00000389857 NOP2P46087 812 aaKnown RBP14.71□□□□□ -0.05
CCDC88C-204ENST00000389857 MYCNP04198 464 aaPredicted RBP14.71□□□□□ -0.05
CCDC88C-204ENST00000389857 PRPF4BQ13523 1007 aaKnown RBP14.71□□□□□ -0.05
CCDC88C-204ENST00000389857 SMARCC1Q92922 1105 aaPredicted RBP14.71□□□□□ -0.05
CCDC88C-204ENST00000389857 FAM135AQ9P2D6 1515 aa14.71□□□□□ -0.05
CCDC88C-204ENST00000389857 SMARCA5O60264 1052 aaPredicted RBP14.71□□□□□ -0.05
CCDC88C-204ENST00000389857 PTCD1O75127 700 aaKnown RBP14.71□□□□□ -0.05
CCDC88C-204ENST00000389857 PLVAPQ9BX97 442 aa14.71□□□□□ -0.05
CCDC88C-204ENST00000389857 HLA-DOAP06340 250 aa14.71□□□□□ -0.06
CCDC88C-204ENST00000389857 PTPRCP08575 1304 aa14.71□□□□□ -0.06
CCDC88C-204ENST00000389857 CEP112Q8N8E3 955 aa14.7□□□□□ -0.06
CCDC88C-204ENST00000389857 CPLX3Q8WVH0 158 aa14.7□□□□□ -0.06
CCDC88C-204ENST00000389857 GOLIM4O00461 696 aa14.7□□□□□ -0.06
CCDC88C-204ENST00000389857 LDHCP07864 332 aa14.7□□□□□ -0.06
CCDC88C-204ENST00000389857 XPCQ01831 940 aaPredicted RBP14.7□□□□□ -0.06
CCDC88C-204ENST00000389857 CCDC174Q6PII3 467 aa14.7□□□□□ -0.06
CCDC88C-204ENST00000389857 CABP5Q9NP86 173 aa14.7□□□□□ -0.06
CCDC88C-204ENST00000389857 RMND1Q9NWS8 449 aa14.7□□□□□ -0.06
CCDC88C-204ENST00000389857 MIS18AQ9NYP9 233 aa14.7□□□□□ -0.06
CCDC88C-204ENST00000389857 PPP1R14CQ8TAE6 165 aa14.7□□□□□ -0.06
CCDC88C-204ENST00000389857 MCM10Q7L590 875 aa14.7□□□□□ -0.06
CCDC88C-204ENST00000389857 PUF60Q9UHX1 559 aaKnown RBP14.7□□□□□ -0.06
CCDC88C-204ENST00000389857 MAATS1Q7Z4T9 603 aa14.7□□□□□ -0.06
CCDC88C-204ENST00000389857 TMC6Q7Z403 805 aa14.7□□□□□ -0.06
CCDC88C-204ENST00000389857 CCDC61Q9Y6R9 512 aa14.7□□□□□ -0.06
CCDC88C-204ENST00000389857 TMEM67Q5HYA8 995 aa14.69□□□□□ -0.06
CCDC88C-204ENST00000389857 PAXIP1Q6ZW49 1069 aaPredicted RBP14.69□□□□□ -0.06
CCDC88C-204ENST00000389857 SAMM50Q9Y512 469 aa14.69□□□□□ -0.06
CCDC88C-204ENST00000389857 IL27Q8NEV9 243 aa14.69□□□□□ -0.06
CCDC88C-204ENST00000389857 HSF2BPO75031 334 aa14.69□□□□□ -0.06
CCDC88C-204ENST00000389857 USP37Q86T82 979 aa14.69□□□□□ -0.06
CCDC88C-204ENST00000389857 CCDC82Q8N4S0 544 aa14.69□□□□□ -0.06
CCDC88C-204ENST00000389857 CCDC155Q8N6L0 562 aa14.69□□□□□ -0.06
CCDC88C-204ENST00000389857 BICD1Q96G01 975 aa14.69□□□□□ -0.06
CCDC88C-204ENST00000389857 CDC5LQ99459 802 aaKnown RBP14.69□□□□□ -0.06
CCDC88C-204ENST00000389857 EXOC1Q9NV70 894 aa14.69□□□□□ -0.06
CCDC88C-204ENST00000389857 GSTO1P78417 241 aa14.69□□□□□ -0.06
CCDC88C-204ENST00000389857 POLR3GO15318 223 aaPredicted RBP14.68□□□□□ -0.06
CCDC88C-204ENST00000389857 TBCAO75347 108 aaKnown RBP14.68□□□□□ -0.06
CCDC88C-204ENST00000389857 CKAP4Q07065 602 aaKnown RBP14.68□□□□□ -0.06
CCDC88C-204ENST00000389857 DNAAF4Q8WXU2 420 aa14.68□□□□□ -0.06
CCDC88C-204ENST00000389857 IARSP41252 1262 aaKnown RBP14.68□□□□□ -0.06
CCDC88C-204ENST00000389857 CFAP57Q96MR6 1250 aa14.68□□□□□ -0.06
CCDC88C-204ENST00000389857 PSMD1Q99460 953 aa14.68□□□□□ -0.06
CCDC88C-204ENST00000389857 MRPS9P82933 396 aaKnown RBP14.68□□□□□ -0.06
CCDC88C-204ENST00000389857 ERMNQ8TAM6 284 aa14.68□□□□□ -0.06
CCDC88C-204ENST00000389857 JADE2Q9NQC1 790 aa14.68□□□□□ -0.06
CCDC88C-204ENST00000389857 CCT2P78371 535 aaKnown RBP14.68□□□□□ -0.06
CCDC88C-204ENST00000389857 PPP4R3BQ5MIZ7 849 aa14.68□□□□□ -0.06
CCDC88C-204ENST00000389857 MFSD6Q6ZSS7 791 aa14.68□□□□□ -0.06
CCDC88C-204ENST00000389857 TEX13AQ9BXU3 409 aaPredicted RBP14.68□□□□□ -0.06
CCDC88C-204ENST00000389857 CAVIN2O95810 425 aa14.67□□□□□ -0.06
CCDC88C-204ENST00000389857 SNW1Q13573 536 aaKnown RBP14.67□□□□□ -0.06
CCDC88C-204ENST00000389857 KIAA0753Q2KHM9 967 aa14.67□□□□□ -0.06
CCDC88C-204ENST00000389857 CCDC8Q9H0W5 538 aaPredicted RBP14.67□□□□□ -0.06
CCDC88C-204ENST00000389857 TMX1Q9H3N1 280 aa14.67□□□□□ -0.06
CCDC88C-204ENST00000389857 A0A1W2PRG0 241 aa14.67□□□□□ -0.06
CCDC88C-204ENST00000389857 STX6O43752 255 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms