RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 TRIM6-TRIM34B2RNG4 842 aa17.45■□□□□ 0.38
VPS9D1-201ENST00000389386 C8orf58Q8NAV2 365 aa17.45■□□□□ 0.38
VPS9D1-201ENST00000389386 TRIM34Q9BYJ4 488 aa17.45■□□□□ 0.38
VPS9D1-201ENST00000389386 ITSN1Q15811 1721 aa17.45■□□□□ 0.38
VPS9D1-201ENST00000389386 CYP2C19P33261 490 aa17.44■□□□□ 0.38
VPS9D1-201ENST00000389386 TPD52L1Q16890 204 aaPredicted RBP17.44■□□□□ 0.38
VPS9D1-201ENST00000389386 CEP135Q66GS9 1140 aa17.44■□□□□ 0.38
VPS9D1-201ENST00000389386 FBXO38Q6PIJ6 1188 aa17.44■□□□□ 0.38
VPS9D1-201ENST00000389386 KIF1BPQ96EK5 621 aa17.44■□□□□ 0.38
VPS9D1-201ENST00000389386 ZNF215Q9UL58 517 aaPredicted RBP17.44■□□□□ 0.38
VPS9D1-201ENST00000389386 CDK12Q9NYV4 1490 aaPredicted RBP17.44■□□□□ 0.38
VPS9D1-201ENST00000389386 BRD2P25440 801 aaKnown RBP17.43■□□□□ 0.38
VPS9D1-201ENST00000389386 KRT24Q2M2I5 525 aa17.43■□□□□ 0.38
VPS9D1-201ENST00000389386 AATKQ6ZMQ8 1374 aa17.43■□□□□ 0.38
VPS9D1-201ENST00000389386 STX6O43752 255 aa17.43■□□□□ 0.38
VPS9D1-201ENST00000389386 F13A1P00488 732 aa17.43■□□□□ 0.38
VPS9D1-201ENST00000389386 SYT1P21579 422 aa17.43■□□□□ 0.38
VPS9D1-201ENST00000389386 HNRNPH2P55795 449 aaKnown RBP17.43■□□□□ 0.38
VPS9D1-201ENST00000389386 ANO2Q9NQ90 1003 aa17.43■□□□□ 0.38
VPS9D1-201ENST00000389386 FEZ2Q9UHY8 353 aaPredicted RBP17.43■□□□□ 0.38
VPS9D1-201ENST00000389386 AKAP12Q02952 1782 aa17.43■□□□□ 0.38
VPS9D1-201ENST00000389386 SLFNL1Q499Z3 407 aa17.42■□□□□ 0.38
VPS9D1-201ENST00000389386 DHX37Q8IY37 1157 aaKnown RBP17.42■□□□□ 0.38
VPS9D1-201ENST00000389386 CHMP4AQ9BY43 222 aa17.42■□□□□ 0.38
VPS9D1-201ENST00000389386 PLEKHG3A1L390 1219 aa17.42■□□□□ 0.38
VPS9D1-201ENST00000389386 MCM10Q7L590 875 aa17.42■□□□□ 0.38
VPS9D1-201ENST00000389386 LUZP1Q86V48 1076 aa17.42■□□□□ 0.38
VPS9D1-201ENST00000389386 ATP6V1DQ9Y5K8 247 aa17.42■□□□□ 0.38
VPS9D1-201ENST00000389386 DRC7Q8IY82 874 aa17.41■□□□□ 0.38
VPS9D1-201ENST00000389386 ZNF592Q92610 1267 aa17.41■□□□□ 0.38
VPS9D1-201ENST00000389386 ZNF446Q9NWS9 450 aa17.41■□□□□ 0.38
VPS9D1-201ENST00000389386 MRVI1Q9Y6F6 885 aa17.41■□□□□ 0.38
VPS9D1-201ENST00000389386 LMTK3Q96Q04 1460 aa17.41■□□□□ 0.38
VPS9D1-201ENST00000389386 USP6P35125 1406 aa17.41■□□□□ 0.38
VPS9D1-201ENST00000389386 ZNF75DP51815 510 aa17.41■□□□□ 0.38
VPS9D1-201ENST00000389386 PLA2G4DQ86XP0 818 aa17.41■□□□□ 0.38
VPS9D1-201ENST00000389386 CACTINQ8WUQ7 758 aaKnown RBP17.41■□□□□ 0.38
VPS9D1-201ENST00000389386 TRERF1Q96PN7 1200 aa17.41■□□□□ 0.38
VPS9D1-201ENST00000389386 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.41■□□□□ 0.38
VPS9D1-201ENST00000389386 V9GYY5 206 aaPredicted RBP17.41■□□□□ 0.38
VPS9D1-201ENST00000389386 CHMLP26374 656 aa17.41■□□□□ 0.38
VPS9D1-201ENST00000389386 ESCO1Q5FWF5 840 aa17.41■□□□□ 0.38
VPS9D1-201ENST00000389386 NOL10Q9BSC4 688 aaKnown RBP17.41■□□□□ 0.38
VPS9D1-201ENST00000389386 DLG5Q8TDM6 1919 aa17.4■□□□□ 0.38
VPS9D1-201ENST00000389386 IRX3P78415 501 aaPredicted RBP17.4■□□□□ 0.38
VPS9D1-201ENST00000389386 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.4■□□□□ 0.38
VPS9D1-201ENST00000389386 NALCNQ8IZF0 1738 aa17.4■□□□□ 0.38
VPS9D1-201ENST00000389386 SSH2Q76I76 1423 aa17.4■□□□□ 0.38
VPS9D1-201ENST00000389386 TYRO3Q06418 890 aa17.4■□□□□ 0.38
VPS9D1-201ENST00000389386 ERO1AQ96HE7 468 aa17.4■□□□□ 0.38
VPS9D1-201ENST00000389386 FOXO3O43524 673 aa17.39■□□□□ 0.37
VPS9D1-201ENST00000389386 ELF2Q15723 593 aa17.39■□□□□ 0.37
VPS9D1-201ENST00000389386 DNM1Q05193 864 aaKnown RBP17.39■□□□□ 0.37
VPS9D1-201ENST00000389386 RTF1Q92541 710 aaKnown RBP17.39■□□□□ 0.37
VPS9D1-201ENST00000389386 ORAI2Q96SN7 254 aa17.39■□□□□ 0.37
VPS9D1-201ENST00000389386 CBX8Q9HC52 389 aa17.39■□□□□ 0.37
VPS9D1-201ENST00000389386 MIS18AQ9NYP9 233 aa17.39■□□□□ 0.37
VPS9D1-201ENST00000389386 MAP3K19Q56UN5 1328 aa17.38■□□□□ 0.37
VPS9D1-201ENST00000389386 TSHZ3Q63HK5 1081 aa17.38■□□□□ 0.37
VPS9D1-201ENST00000389386 RGS22Q8NE09 1264 aa17.38■□□□□ 0.37
VPS9D1-201ENST00000389386 TRIM5Q9C035 493 aa17.38■□□□□ 0.37
VPS9D1-201ENST00000389386 ERBB3P21860 1342 aa17.38■□□□□ 0.37
VPS9D1-201ENST00000389386 MAP3K11Q16584 847 aa17.38■□□□□ 0.37
VPS9D1-201ENST00000389386 CCDC171Q6TFL3 1326 aa17.37■□□□□ 0.37
VPS9D1-201ENST00000389386 SALL3Q9BXA9 1300 aa17.37■□□□□ 0.37
VPS9D1-201ENST00000389386 NYAP1Q6ZVC0 841 aa17.37■□□□□ 0.37
VPS9D1-201ENST00000389386 MEIS3Q99687 375 aa17.37■□□□□ 0.37
VPS9D1-201ENST00000389386 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.37■□□□□ 0.37
VPS9D1-201ENST00000389386 RAD51AP2Q09MP3 1159 aa17.37■□□□□ 0.37
VPS9D1-201ENST00000389386 BMS1Q14692 1282 aaKnown RBP17.37■□□□□ 0.37
VPS9D1-201ENST00000389386 OVOS2A0A0J9YW53 1432 aa17.37■□□□□ 0.37
VPS9D1-201ENST00000389386 OVOS2Q6IE36 1432 aa17.37■□□□□ 0.37
VPS9D1-201ENST00000389386 CCDC144BQ3MJ40 725 aa17.36■□□□□ 0.37
VPS9D1-201ENST00000389386 CCDC144CPQ8IYA2 1237 aa17.36■□□□□ 0.37
VPS9D1-201ENST00000389386 HSPA4P34932 840 aa17.36■□□□□ 0.37
VPS9D1-201ENST00000389386 NLRP6P59044 892 aa17.36■□□□□ 0.37
VPS9D1-201ENST00000389386 CERS3Q8IU89 383 aa17.36■□□□□ 0.37
VPS9D1-201ENST00000389386 USP27XA6NNY8 438 aa17.35■□□□□ 0.37
VPS9D1-201ENST00000389386 PTPN14Q15678 1187 aa17.35■□□□□ 0.37
VPS9D1-201ENST00000389386 LTV1Q96GA3 475 aaPredicted RBP17.35■□□□□ 0.37
VPS9D1-201ENST00000389386 PHF8Q9UPP1 1060 aa17.35■□□□□ 0.37
VPS9D1-201ENST00000389386 RAD50Q92878 1312 aa17.35■□□□□ 0.37
VPS9D1-201ENST00000389386 MSH6P52701 1360 aa17.35■□□□□ 0.37
VPS9D1-201ENST00000389386 HMMRO75330 724 aa17.35■□□□□ 0.37
VPS9D1-201ENST00000389386 AMPHP49418 695 aa17.35■□□□□ 0.37
VPS9D1-201ENST00000389386 ANO6Q4KMQ2 910 aa17.35■□□□□ 0.37
VPS9D1-201ENST00000389386 TDRD7Q8NHU6 1098 aaKnown RBP17.35■□□□□ 0.37
VPS9D1-201ENST00000389386 TTC14Q96N46 770 aa17.35■□□□□ 0.37
VPS9D1-201ENST00000389386 NUP62CLQ9H1M0 184 aa17.35■□□□□ 0.37
VPS9D1-201ENST00000389386 SMC3Q9UQE7 1217 aa17.35■□□□□ 0.37
VPS9D1-201ENST00000389386 MTMR6Q9Y217 621 aa17.35■□□□□ 0.37
VPS9D1-201ENST00000389386 ADGRL3Q9HAR2 1447 aa17.35■□□□□ 0.37
VPS9D1-201ENST00000389386 TMEM94Q12767 1356 aa17.35■□□□□ 0.37
VPS9D1-201ENST00000389386 KIAA0232Q92628 1395 aa17.35■□□□□ 0.37
VPS9D1-201ENST00000389386 TOPAZ1Q8N9V7 1692 aa17.34■□□□□ 0.37
VPS9D1-201ENST00000389386 H2AFXP16104 143 aaPredicted RBP17.34■□□□□ 0.37
VPS9D1-201ENST00000389386 CLIP2Q9UDT6 1046 aa17.34■□□□□ 0.37
VPS9D1-201ENST00000389386 FHOD1Q9Y613 1164 aa17.34■□□□□ 0.37
VPS9D1-201ENST00000389386 TUBGCP6Q96RT7 1819 aa17.34■□□□□ 0.37
VPS9D1-201ENST00000389386 PEAK1Q9H792 1746 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms