RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 SSH3Q8TE77 659 aa19.61■□□□□ 0.73
NKX3-1-201ENST00000380871 PXDNQ92626 1479 aa19.61■□□□□ 0.73
NKX3-1-201ENST00000380871 RHPN1Q8TCX5 695 aa19.61■□□□□ 0.73
NKX3-1-201ENST00000380871 SIL1Q9H173 461 aa19.61■□□□□ 0.73
NKX3-1-201ENST00000380871 CNPY2Q9Y2B0 182 aa19.61■□□□□ 0.73
NKX3-1-201ENST00000380871 CEMIPQ8WUJ3 1361 aa19.6■□□□□ 0.73
NKX3-1-201ENST00000380871 CWC27Q6UX04 472 aaKnown RBP19.6■□□□□ 0.73
NKX3-1-201ENST00000380871 SNX14Q9Y5W7 946 aa19.6■□□□□ 0.73
NKX3-1-201ENST00000380871 RIC3Q7Z5B4 369 aa19.59■□□□□ 0.73
NKX3-1-201ENST00000380871 LRRC37A3O60309 1634 aa19.59■□□□□ 0.73
NKX3-1-201ENST00000380871 TMEM94Q12767 1356 aa19.59■□□□□ 0.73
NKX3-1-201ENST00000380871 TATP17735 454 aaPredicted RBP19.59■□□□□ 0.73
NKX3-1-201ENST00000380871 GLIPR1L2Q4G1C9 344 aa19.59■□□□□ 0.73
NKX3-1-201ENST00000380871 AK2P54819 239 aa19.58■□□□□ 0.73
NKX3-1-201ENST00000380871 DDX54Q8TDD1 881 aaKnown RBP19.58■□□□□ 0.73
NKX3-1-201ENST00000380871 BABAM1Q9NWV8 329 aa19.58■□□□□ 0.73
NKX3-1-201ENST00000380871 FAM13BQ9NYF5 915 aa19.58■□□□□ 0.73
NKX3-1-201ENST00000380871 SGSM2O43147 1006 aa19.58■□□□□ 0.72
NKX3-1-201ENST00000380871 LARGE1O95461 756 aa19.58■□□□□ 0.72
NKX3-1-201ENST00000380871 ZNF830Q96NB3 372 aaPredicted RBP19.58■□□□□ 0.72
NKX3-1-201ENST00000380871 CCDC9Q9Y3X0 531 aaKnown RBP19.58■□□□□ 0.72
NKX3-1-201ENST00000380871 RAD50Q92878 1312 aa19.58■□□□□ 0.72
NKX3-1-201ENST00000380871 PTMAP06454 111 aaKnown RBP19.57■□□□□ 0.72
NKX3-1-201ENST00000380871 RUFY3Q7L099 469 aa19.57■□□□□ 0.72
NKX3-1-201ENST00000380871 CCDC39Q9UFE4 941 aa19.57■□□□□ 0.72
NKX3-1-201ENST00000380871 WDR33Q9C0J8 1336 aaKnown RBP19.57■□□□□ 0.72
NKX3-1-201ENST00000380871 UQCRHLA0A096LP55 91 aa19.57■□□□□ 0.72
NKX3-1-201ENST00000380871 UQCRHP07919 91 aa19.57■□□□□ 0.72
NKX3-1-201ENST00000380871 KLHDC4Q8TBB5 520 aa19.57■□□□□ 0.72
NKX3-1-201ENST00000380871 LSG1Q9H089 658 aaKnown RBP19.57■□□□□ 0.72
NKX3-1-201ENST00000380871 CHD2O14647 1828 aaKnown RBP19.57■□□□□ 0.72
NKX3-1-201ENST00000380871 ERBB3P21860 1342 aa19.57■□□□□ 0.72
NKX3-1-201ENST00000380871 LTN1O94822 1766 aa19.56■□□□□ 0.72
NKX3-1-201ENST00000380871 ARID3AQ99856 593 aa19.56■□□□□ 0.72
NKX3-1-201ENST00000380871 POLA2Q14181 598 aa19.56■□□□□ 0.72
NKX3-1-201ENST00000380871 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.56■□□□□ 0.72
NKX3-1-201ENST00000380871 TTC14Q96N46 770 aa19.56■□□□□ 0.72
NKX3-1-201ENST00000380871 USP25Q9UHP3 1055 aa19.56■□□□□ 0.72
NKX3-1-201ENST00000380871 NFAT5O94916 1531 aa19.55■□□□□ 0.72
NKX3-1-201ENST00000380871 ADCY9O60503 1353 aa19.55■□□□□ 0.72
NKX3-1-201ENST00000380871 IL17RAQ96F46 866 aa19.55■□□□□ 0.72
NKX3-1-201ENST00000380871 RGPD2P0DJD1 1756 aa19.55■□□□□ 0.72
NKX3-1-201ENST00000380871 FIBPO43427 364 aa19.55■□□□□ 0.72
NKX3-1-201ENST00000380871 C1orf167Q5SNV9 1468 aa19.55■□□□□ 0.72
NKX3-1-201ENST00000380871 AOX1Q06278 1338 aa19.54■□□□□ 0.72
NKX3-1-201ENST00000380871 SYT1P21579 422 aa19.54■□□□□ 0.72
NKX3-1-201ENST00000380871 KSR2Q6VAB6 950 aa19.54■□□□□ 0.72
NKX3-1-201ENST00000380871 SYAP1Q96A49 352 aaPredicted RBP19.54■□□□□ 0.72
NKX3-1-201ENST00000380871 KIF1BPQ96EK5 621 aa19.54■□□□□ 0.72
NKX3-1-201ENST00000380871 ZNF496Q96IT1 587 aaPredicted RBP19.54■□□□□ 0.72
NKX3-1-201ENST00000380871 ZNF790Q6PG37 636 aa19.54■□□□□ 0.72
NKX3-1-201ENST00000380871 COPS6Q7L5N1 327 aa19.54■□□□□ 0.72
NKX3-1-201ENST00000380871 USP16Q9Y5T5 823 aa19.54■□□□□ 0.72
NKX3-1-201ENST00000380871 HCLS1P14317 486 aaPredicted RBP19.53■□□□□ 0.72
NKX3-1-201ENST00000380871 CASTP20810 708 aaKnown RBP19.53■□□□□ 0.72
NKX3-1-201ENST00000380871 C17orf53Q8N3J3 647 aaPredicted RBP19.53■□□□□ 0.72
NKX3-1-201ENST00000380871 XAGE3Q8WTP9 111 aa19.53■□□□□ 0.72
NKX3-1-201ENST00000380871 ZMYND15Q9H091 742 aa19.53■□□□□ 0.72
NKX3-1-201ENST00000380871 CCDC8Q9H0W5 538 aaPredicted RBP19.53■□□□□ 0.72
NKX3-1-201ENST00000380871 ZNF330Q9Y3S2 320 aaPredicted RBP19.53■□□□□ 0.72
NKX3-1-201ENST00000380871 MARF1Q9Y4F3 1742 aaKnown RBP19.53■□□□□ 0.72
NKX3-1-201ENST00000380871 PTH1RQ03431 593 aa19.53■□□□□ 0.72
NKX3-1-201ENST00000380871 COL9A3Q14050 684 aaPredicted RBP19.53■□□□□ 0.72
NKX3-1-201ENST00000380871 ADCK5Q3MIX3 580 aa19.53■□□□□ 0.72
NKX3-1-201ENST00000380871 TTC5Q8N0Z6 440 aa19.53■□□□□ 0.72
NKX3-1-201ENST00000380871 MYD88Q99836 296 aa19.53■□□□□ 0.72
NKX3-1-201ENST00000380871 PDCL3Q9H2J4 239 aa19.53■□□□□ 0.72
NKX3-1-201ENST00000380871 ZSCAN22P10073 491 aaPredicted RBP19.52■□□□□ 0.72
NKX3-1-201ENST00000380871 ATP5J2-PTCD1G3V325 749 aa19.52■□□□□ 0.72
NKX3-1-201ENST00000380871 PTCD1O75127 700 aaKnown RBP19.52■□□□□ 0.72
NKX3-1-201ENST00000380871 RAB11FIP3O75154 756 aa19.52■□□□□ 0.72
NKX3-1-201ENST00000380871 STX6O43752 255 aa19.52■□□□□ 0.71
NKX3-1-201ENST00000380871 CNTROBQ8N137 903 aa19.52■□□□□ 0.71
NKX3-1-201ENST00000380871 SUCLG2Q96I99 432 aa19.52■□□□□ 0.71
NKX3-1-201ENST00000380871 STRN4Q9NRL3 753 aa19.52■□□□□ 0.71
NKX3-1-201ENST00000380871 PXDNLA1KZ92 1463 aa19.52■□□□□ 0.71
NKX3-1-201ENST00000380871 CCDC83Q8IWF9 413 aa19.51■□□□□ 0.71
NKX3-1-201ENST00000380871 IFIT2P09913 472 aaKnown RBP19.51■□□□□ 0.71
NKX3-1-201ENST00000380871 CLASRPQ8N2M8 674 aaKnown RBP19.51■□□□□ 0.71
NKX3-1-201ENST00000380871 AACSQ86V21 672 aa19.5■□□□□ 0.71
NKX3-1-201ENST00000380871 LIMCH1Q9UPQ0 1083 aa19.5■□□□□ 0.71
NKX3-1-201ENST00000380871 DDX58O95786 925 aaKnown RBP19.5■□□□□ 0.71
NKX3-1-201ENST00000380871 HOXB7P09629 217 aa19.5■□□□□ 0.71
NKX3-1-201ENST00000380871 BICC1Q9H694 974 aaKnown RBP19.5■□□□□ 0.71
NKX3-1-201ENST00000380871 PHKG2P15735 406 aa19.5■□□□□ 0.71
NKX3-1-201ENST00000380871 TTC12Q9H892 705 aaPredicted RBP19.5■□□□□ 0.71
NKX3-1-201ENST00000380871 PRDM11Q9NQV5 511 aa19.5■□□□□ 0.71
NKX3-1-201ENST00000380871 NPHP3Q7Z494 1330 aa19.5■□□□□ 0.71
NKX3-1-201ENST00000380871 CABP4P57796 275 aa19.49■□□□□ 0.71
NKX3-1-201ENST00000380871 SLC52A2Q9HAB3 445 aa19.49■□□□□ 0.71
NKX3-1-201ENST00000380871 HYPKQ9NX55 129 aa19.49■□□□□ 0.71
NKX3-1-201ENST00000380871 SMC3Q9UQE7 1217 aa19.49■□□□□ 0.71
NKX3-1-201ENST00000380871 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.49■□□□□ 0.71
NKX3-1-201ENST00000380871 PHF14O94880 888 aa19.49■□□□□ 0.71
NKX3-1-201ENST00000380871 MCM5P33992 734 aa19.49■□□□□ 0.71
NKX3-1-201ENST00000380871 PRPF40BQ6NWY9 871 aaKnown RBP19.49■□□□□ 0.71
NKX3-1-201ENST00000380871 GIMAP6Q6P9H5 292 aa19.49■□□□□ 0.71
NKX3-1-201ENST00000380871 TOM1L2Q6ZVM7 507 aa19.49■□□□□ 0.71
NKX3-1-201ENST00000380871 CHMP3Q9Y3E7 222 aa19.49■□□□□ 0.71
NKX3-1-201ENST00000380871 DNM1Q05193 864 aaKnown RBP19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms