RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 A1BGP04217 495 aa18.91■□□□□ 0.62
PTCH1-202ENST00000375271 PRPF40BQ6NWY9 871 aaKnown RBP18.91■□□□□ 0.62
PTCH1-202ENST00000375271 RTF1Q92541 710 aaKnown RBP18.91■□□□□ 0.62
PTCH1-202ENST00000375271 CREBZFQ9NS37 354 aa18.91■□□□□ 0.62
PTCH1-202ENST00000375271 IL17REQ8NFR9 667 aa18.9■□□□□ 0.62
PTCH1-202ENST00000375271 MKRN1Q9UHC7 482 aaKnown RBP18.9■□□□□ 0.62
PTCH1-202ENST00000375271 NUDCQ9Y266 331 aa18.9■□□□□ 0.62
PTCH1-202ENST00000375271 DDNO94850 711 aaPredicted RBP18.89■□□□□ 0.61
PTCH1-202ENST00000375271 CCDC93Q567U6 631 aa18.89■□□□□ 0.61
PTCH1-202ENST00000375271 CAMTA2O94983 1202 aa18.88■□□□□ 0.61
PTCH1-202ENST00000375271 SRGNP10124 158 aa18.88■□□□□ 0.61
PTCH1-202ENST00000375271 GTF2E1P29083 439 aaPredicted RBP18.88■□□□□ 0.61
PTCH1-202ENST00000375271 AIDAQ96BJ3 306 aa18.88■□□□□ 0.61
PTCH1-202ENST00000375271 SIPA1L3O60292 1781 aaPredicted RBP18.88■□□□□ 0.61
PTCH1-202ENST00000375271 POTECB2RU33 542 aa18.87■□□□□ 0.61
PTCH1-202ENST00000375271 PRKAR2BP31323 418 aa18.87■□□□□ 0.61
PTCH1-202ENST00000375271 BCORQ6W2J9 1755 aa18.86■□□□□ 0.61
PTCH1-202ENST00000375271 NPR1P16066 1061 aa18.86■□□□□ 0.61
PTCH1-202ENST00000375271 EAPPQ56P03 285 aaPredicted RBP18.86■□□□□ 0.61
PTCH1-202ENST00000375271 CLEC4GQ6UXB4 293 aa18.86■□□□□ 0.61
PTCH1-202ENST00000375271 TPTE2Q6XPS3 522 aa18.86■□□□□ 0.61
PTCH1-202ENST00000375271 LDHDQ86WU2 507 aa18.86■□□□□ 0.61
PTCH1-202ENST00000375271 CLEC11AQ9Y240 323 aa18.86■□□□□ 0.61
PTCH1-202ENST00000375271 SLX4Q8IY92 1834 aa18.86■□□□□ 0.61
PTCH1-202ENST00000375271 ARFGEF2Q9Y6D5 1785 aa18.86■□□□□ 0.61
PTCH1-202ENST00000375271 COL3A1P02461 1466 aaPredicted RBP18.85■□□□□ 0.61
PTCH1-202ENST00000375271 PER1O15534 1290 aaPredicted RBP18.85■□□□□ 0.61
PTCH1-202ENST00000375271 SNRPA1P09661 255 aaKnown RBP18.85■□□□□ 0.61
PTCH1-202ENST00000375271 NPC1L1Q9UHC9 1359 aa18.84■□□□□ 0.61
PTCH1-202ENST00000375271 NEFMP07197 916 aa18.84■□□□□ 0.61
PTCH1-202ENST00000375271 PIP4K2AP48426 406 aaPredicted RBP18.84■□□□□ 0.61
PTCH1-202ENST00000375271 NIP7Q9Y221 180 aaKnown RBP eCLIP18.84■□□□□ 0.61
PTCH1-202ENST00000375271 CEMIPQ8WUJ3 1361 aa18.83■□□□□ 0.61
PTCH1-202ENST00000375271 FAM177BA6PVY3 158 aa18.83■□□□□ 0.6
PTCH1-202ENST00000375271 FKBP4Q02790 459 aaKnown RBP eCLIP18.83■□□□□ 0.6
PTCH1-202ENST00000375271 RTKN2Q8IZC4 609 aa18.83■□□□□ 0.6
PTCH1-202ENST00000375271 SCN4AP35499 1836 aa18.83■□□□□ 0.6
PTCH1-202ENST00000375271 KCNQ3O43525 872 aa18.82■□□□□ 0.6
PTCH1-202ENST00000375271 U2AF1L5P0DN76 240 aaPredicted RBP18.82■□□□□ 0.6
PTCH1-202ENST00000375271 U2AF1Q01081 240 aaKnown RBP eCLIP18.82■□□□□ 0.6
PTCH1-202ENST00000375271 HACL1Q9UJ83 578 aa18.82■□□□□ 0.6
PTCH1-202ENST00000375271 USP16Q9Y5T5 823 aa18.82■□□□□ 0.6
PTCH1-202ENST00000375271 TMEM88BA6NKF7 163 aa18.81■□□□□ 0.6
PTCH1-202ENST00000375271 POTEIP0CG38 1075 aa18.81■□□□□ 0.6
PTCH1-202ENST00000375271 POTEJP0CG39 1038 aa18.81■□□□□ 0.6
PTCH1-202ENST00000375271 ALDH1B1P30837 517 aa18.81■□□□□ 0.6
PTCH1-202ENST00000375271 L3MBTL3Q96JM7 780 aaPredicted RBP18.81■□□□□ 0.6
PTCH1-202ENST00000375271 TAF1DQ9H5J8 278 aaPredicted RBP18.81■□□□□ 0.6
PTCH1-202ENST00000375271 ZNF277Q9NRM2 450 aaPredicted RBP18.81■□□□□ 0.6
PTCH1-202ENST00000375271 CNTNAP1P78357 1384 aa18.81■□□□□ 0.6
PTCH1-202ENST00000375271 MCM10Q7L590 875 aa18.8■□□□□ 0.6
PTCH1-202ENST00000375271 PNMA8AQ86V59 439 aaPredicted RBP18.8■□□□□ 0.6
PTCH1-202ENST00000375271 JDP2Q8WYK2 163 aa18.8■□□□□ 0.6
PTCH1-202ENST00000375271 RSPH6AQ9H0K4 717 aa18.8■□□□□ 0.6
PTCH1-202ENST00000375271 PHACTR3Q96KR7 559 aa18.79■□□□□ 0.6
PTCH1-202ENST00000375271 CTCFP49711 727 aaPredicted RBP18.78■□□□□ 0.6
PTCH1-202ENST00000375271 NYXQ9GZU5 481 aa18.78■□□□□ 0.6
PTCH1-202ENST00000375271 RGL2O15211 777 aa18.77■□□□□ 0.6
PTCH1-202ENST00000375271 LMOD1P29536 600 aaPredicted RBP18.77■□□□□ 0.6
PTCH1-202ENST00000375271 EPHX2P34913 555 aa18.77■□□□□ 0.6
PTCH1-202ENST00000375271 IARSP41252 1262 aaKnown RBP18.77■□□□□ 0.6
PTCH1-202ENST00000375271 TMX4Q9H1E5 349 aaPredicted RBP18.77■□□□□ 0.6
PTCH1-202ENST00000375271 ZNF541Q9H0D2 1346 aa18.76■□□□□ 0.59
PTCH1-202ENST00000375271 PRAMEF22A3QJZ6 481 aa18.76■□□□□ 0.59
PTCH1-202ENST00000375271 FOXN1O15353 648 aa18.76■□□□□ 0.59
PTCH1-202ENST00000375271 EIF6P56537 245 aaKnown RBP18.76■□□□□ 0.59
PTCH1-202ENST00000375271 KIF6Q6ZMV9 814 aa18.76■□□□□ 0.59
PTCH1-202ENST00000375271 RPGRQ92834 1020 aaKnown RBP18.76■□□□□ 0.59
PTCH1-202ENST00000375271 RNF123Q5XPI4 1314 aa18.75■□□□□ 0.59
PTCH1-202ENST00000375271 PASKQ96RG2 1323 aa18.75■□□□□ 0.59
PTCH1-202ENST00000375271 SYNE4Q8N205 404 aa18.75■□□□□ 0.59
PTCH1-202ENST00000375271 NGEFQ8N5V2 710 aa18.75■□□□□ 0.59
PTCH1-202ENST00000375271 C7orf43Q8WVR3 580 aa18.75■□□□□ 0.59
PTCH1-202ENST00000375271 PRDM10Q9NQV6 1147 aa18.75■□□□□ 0.59
PTCH1-202ENST00000375271 ABT1Q9ULW3 272 aaKnown RBP18.75■□□□□ 0.59
PTCH1-202ENST00000375271 HTATSF1O43719 755 aaKnown RBP18.74■□□□□ 0.59
PTCH1-202ENST00000375271 PAXIP1Q6ZW49 1069 aaPredicted RBP18.74■□□□□ 0.59
PTCH1-202ENST00000375271 GPC2Q8N158 579 aa18.74■□□□□ 0.59
PTCH1-202ENST00000375271 GJA3Q9Y6H8 435 aa18.74■□□□□ 0.59
PTCH1-202ENST00000375271 VEGFBP49765 207 aa18.73■□□□□ 0.59
PTCH1-202ENST00000375271 DCTN1Q14203 1278 aa18.73■□□□□ 0.59
PTCH1-202ENST00000375271 TAF7Q15545 349 aaPredicted RBP18.73■□□□□ 0.59
PTCH1-202ENST00000375271 CC2D2BQ6DHV5 1058 aa18.73■□□□□ 0.59
PTCH1-202ENST00000375271 PNISRQ8TF01 805 aaKnown RBP18.73■□□□□ 0.59
PTCH1-202ENST00000375271 KLRG2A4D1S0 409 aaPredicted RBP18.72■□□□□ 0.59
PTCH1-202ENST00000375271 DEFB115Q30KQ5 88 aa18.72■□□□□ 0.59
PTCH1-202ENST00000375271 OLFM4Q6UX06 510 aa18.72■□□□□ 0.59
PTCH1-202ENST00000375271 CNTROBQ8N137 903 aa18.72■□□□□ 0.59
PTCH1-202ENST00000375271 BEGAINQ9BUH8 593 aa18.72■□□□□ 0.59
PTCH1-202ENST00000375271 LAMB4A4D0S4 1761 aa18.72■□□□□ 0.59
PTCH1-202ENST00000375271 NBPF26B4DH59 902 aa18.71■□□□□ 0.59
PTCH1-202ENST00000375271 GRIPAP1Q4V328 841 aa18.71■□□□□ 0.59
PTCH1-202ENST00000375271 MAP1SQ66K74 1059 aaPredicted RBP18.71■□□□□ 0.59
PTCH1-202ENST00000375271 NBPF10Q6P3W6 841 aaKnown RBP18.71■□□□□ 0.59
PTCH1-202ENST00000375271 NBPF15Q8N660 670 aa18.71■□□□□ 0.59
PTCH1-202ENST00000375271 PSMD1Q99460 953 aa18.71■□□□□ 0.59
PTCH1-202ENST00000375271 FZD9O00144 591 aa18.7■□□□□ 0.58
PTCH1-202ENST00000375271 MAP2K1Q02750 393 aaPredicted RBP18.7■□□□□ 0.58
PTCH1-202ENST00000375271 HLFQ16534 295 aa18.7■□□□□ 0.58
PTCH1-202ENST00000375271 LARGE2Q8N3Y3 721 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms