RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 ST18O60284 1047 aa10.68□□□□□ -0.7
SNRNP40-202ENST00000373720 MX1P20591 662 aa10.68□□□□□ -0.7
SNRNP40-202ENST00000373720 ZC3H6P61129 1189 aaKnown RBP10.68□□□□□ -0.7
SNRNP40-202ENST00000373720 PI4KAP1Q8N8J0 262 aa10.68□□□□□ -0.7
SNRNP40-202ENST00000373720 CWC22Q9HCG8 908 aaKnown RBP10.68□□□□□ -0.7
SNRNP40-202ENST00000373720 C9orf78Q9NZ63 289 aaPredicted RBP10.68□□□□□ -0.7
SNRNP40-202ENST00000373720 CHPF2Q9P2E5 772 aa10.68□□□□□ -0.7
SNRNP40-202ENST00000373720 TRPC6Q9Y210 931 aa10.68□□□□□ -0.7
SNRNP40-202ENST00000373720 F6X3S4 739 aa10.67□□□□□ -0.7
SNRNP40-202ENST00000373720 TIE1P35590 1138 aa10.67□□□□□ -0.7
SNRNP40-202ENST00000373720 VSIG10Q8N0Z9 540 aa10.67□□□□□ -0.7
SNRNP40-202ENST00000373720 RBM33Q96EV2 1170 aaKnown RBP10.67□□□□□ -0.7
SNRNP40-202ENST00000373720 CDCA7Q9BWT1 371 aaPredicted RBP10.67□□□□□ -0.7
SNRNP40-202ENST00000373720 ISY1Q9ULR0 285 aaKnown RBP10.67□□□□□ -0.7
SNRNP40-202ENST00000373720 ZBTB7CA1YPR0 619 aa10.66□□□□□ -0.7
SNRNP40-202ENST00000373720 EIF2S2P20042 333 aaKnown RBP10.66□□□□□ -0.7
SNRNP40-202ENST00000373720 SDSP20132 328 aa10.66□□□□□ -0.7
SNRNP40-202ENST00000373720 CABP4P57796 275 aa10.66□□□□□ -0.7
SNRNP40-202ENST00000373720 NFKBIBQ15653 356 aa10.66□□□□□ -0.7
SNRNP40-202ENST00000373720 RASEFQ8IZ41 740 aa10.66□□□□□ -0.7
SNRNP40-202ENST00000373720 CLASRPQ8N2M8 674 aaKnown RBP10.66□□□□□ -0.7
SNRNP40-202ENST00000373720 ZCRB1Q8TBF4 217 aaKnown RBP10.66□□□□□ -0.7
SNRNP40-202ENST00000373720 RUFY2Q8WXA3 655 aa10.66□□□□□ -0.7
SNRNP40-202ENST00000373720 USP26Q9BXU7 913 aa10.66□□□□□ -0.7
SNRNP40-202ENST00000373720 ANTXR1Q9H6X2 564 aa10.66□□□□□ -0.7
SNRNP40-202ENST00000373720 PRDM11Q9NQV5 511 aa10.66□□□□□ -0.7
SNRNP40-202ENST00000373720 LRRFIP2Q9Y608 721 aaKnown RBP10.66□□□□□ -0.7
SNRNP40-202ENST00000373720 STRCQ7RTU9 1775 aa10.65□□□□□ -0.7
SNRNP40-202ENST00000373720 DDX11L8A8MPP1 907 aa10.65□□□□□ -0.7
SNRNP40-202ENST00000373720 K7ELQ4 463 aaPredicted RBP10.65□□□□□ -0.7
SNRNP40-202ENST00000373720 GRM8O00222 908 aa10.65□□□□□ -0.7
SNRNP40-202ENST00000373720 SRGAP3O43295 1099 aa10.65□□□□□ -0.7
SNRNP40-202ENST00000373720 GLRX3O76003 335 aaKnown RBP10.65□□□□□ -0.7
SNRNP40-202ENST00000373720 IL2RBP14784 551 aa10.65□□□□□ -0.7
SNRNP40-202ENST00000373720 GSPT1P15170 499 aaKnown RBP10.65□□□□□ -0.7
SNRNP40-202ENST00000373720 XPCQ01831 940 aaPredicted RBP10.65□□□□□ -0.7
SNRNP40-202ENST00000373720 SKOR2Q2VWA4 1001 aaPredicted RBP10.65□□□□□ -0.7
SNRNP40-202ENST00000373720 PPP1R42Q7Z4L9 355 aa10.65□□□□□ -0.7
SNRNP40-202ENST00000373720 CNTROBQ8N137 903 aa10.65□□□□□ -0.7
SNRNP40-202ENST00000373720 PLCD3Q8N3E9 789 aa10.65□□□□□ -0.7
SNRNP40-202ENST00000373720 METTL22Q9BUU2 404 aaPredicted RBP10.65□□□□□ -0.7
SNRNP40-202ENST00000373720 PHAXQ9H814 394 aaKnown RBP10.65□□□□□ -0.7
SNRNP40-202ENST00000373720 FBXO3Q9UK99 471 aa10.65□□□□□ -0.7
SNRNP40-202ENST00000373720 ADCY9O60503 1353 aa10.65□□□□□ -0.71
SNRNP40-202ENST00000373720 SURF6O75683 361 aaKnown RBP10.64□□□□□ -0.71
SNRNP40-202ENST00000373720 ANKRD13DQ6ZTN6 518 aa10.64□□□□□ -0.71
SNRNP40-202ENST00000373720 RIC3Q7Z5B4 369 aa10.64□□□□□ -0.71
SNRNP40-202ENST00000373720 KLHL34Q8N239 644 aa10.64□□□□□ -0.71
SNRNP40-202ENST00000373720 RHPN1Q8TCX5 695 aa10.64□□□□□ -0.71
SNRNP40-202ENST00000373720 GBP4Q96PP9 640 aa10.64□□□□□ -0.71
SNRNP40-202ENST00000373720 ATG3Q9NT62 314 aa10.64□□□□□ -0.71
SNRNP40-202ENST00000373720 MAP3K2Q9Y2U5 619 aa10.64□□□□□ -0.71
SNRNP40-202ENST00000373720 NHSL1Q5SYE7 1610 aa10.64□□□□□ -0.71
SNRNP40-202ENST00000373720 KDM6AO15550 1401 aaPredicted RBP10.64□□□□□ -0.71
SNRNP40-202ENST00000373720 RGPD2P0DJD1 1756 aa10.64□□□□□ -0.71
SNRNP40-202ENST00000373720 XIRP1Q702N8 1843 aaKnown RBP10.63□□□□□ -0.71
SNRNP40-202ENST00000373720 COL5A2P05997 1499 aaPredicted RBP10.63□□□□□ -0.71
SNRNP40-202ENST00000373720 POTEFA5A3E0 1075 aa10.63□□□□□ -0.71
SNRNP40-202ENST00000373720 NUCB2P80303 420 aa10.63□□□□□ -0.71
SNRNP40-202ENST00000373720 CLEC17AQ6ZS10 378 aa10.63□□□□□ -0.71
SNRNP40-202ENST00000373720 NFATC2IPQ8NCF5 419 aa10.63□□□□□ -0.71
SNRNP40-202ENST00000373720 PLBD2Q8NHP8 589 aa10.63□□□□□ -0.71
SNRNP40-202ENST00000373720 MEGF6O75095 1541 aa10.63□□□□□ -0.71
SNRNP40-202ENST00000373720 PNMA6EA0A0J9YXQ4 647 aa10.62□□□□□ -0.71
SNRNP40-202ENST00000373720 GOLGA6L22H0YM25 854 aa10.62□□□□□ -0.71
SNRNP40-202ENST00000373720 CYP27B1O15528 508 aa10.62□□□□□ -0.71
SNRNP40-202ENST00000373720 G3BP1Q13283 466 aaKnown RBP eCLIP10.62□□□□□ -0.71
SNRNP40-202ENST00000373720 PDIA6Q15084 440 aa10.62□□□□□ -0.71
SNRNP40-202ENST00000373720 TOM1L2Q6ZVM7 507 aa10.62□□□□□ -0.71
SNRNP40-202ENST00000373720 RFX7Q2KHR2 1363 aa10.62□□□□□ -0.71
SNRNP40-202ENST00000373720 KDM4FA0A1W2PPD8 638 aa10.61□□□□□ -0.71
SNRNP40-202ENST00000373720 TTLL13PA6NNM8 815 aa10.61□□□□□ -0.71
SNRNP40-202ENST00000373720 HSP90AA1P07900 732 aaKnown RBP10.61□□□□□ -0.71
SNRNP40-202ENST00000373720 DDIT3P35638 169 aa10.61□□□□□ -0.71
SNRNP40-202ENST00000373720 EVA1CP58658 441 aa10.61□□□□□ -0.71
SNRNP40-202ENST00000373720 TRIM28Q13263 835 aaKnown RBP10.61□□□□□ -0.71
SNRNP40-202ENST00000373720 NBR1Q14596 966 aa10.61□□□□□ -0.71
SNRNP40-202ENST00000373720 GSE1Q14687 1217 aa10.61□□□□□ -0.71
SNRNP40-202ENST00000373720 INTS4Q96HW7 963 aaKnown RBP10.61□□□□□ -0.71
SNRNP40-202ENST00000373720 COPRSQ9NQ92 184 aa10.61□□□□□ -0.71
SNRNP40-202ENST00000373720 ECHDC1Q9NTX5 307 aa10.61□□□□□ -0.71
SNRNP40-202ENST00000373720 THRAP3Q9Y2W1 955 aaKnown RBP10.61□□□□□ -0.71
SNRNP40-202ENST00000373720 RAD50Q92878 1312 aa10.6□□□□□ -0.71
SNRNP40-202ENST00000373720 LAMB4A4D0S4 1761 aa10.6□□□□□ -0.71
SNRNP40-202ENST00000373720 RGPD5Q99666 1765 aa10.6□□□□□ -0.71
SNRNP40-202ENST00000373720 NBPF7P0C2Y1 421 aaPredicted RBP10.6□□□□□ -0.71
SNRNP40-202ENST00000373720 GCKRQ14397 625 aa10.6□□□□□ -0.71
SNRNP40-202ENST00000373720 RABL6Q3YEC7 729 aaPredicted RBP10.6□□□□□ -0.71
SNRNP40-202ENST00000373720 KIAA1211Q6ZU35 1233 aa10.6□□□□□ -0.71
SNRNP40-202ENST00000373720 EVI5LQ96CN4 794 aa10.6□□□□□ -0.71
SNRNP40-202ENST00000373720 KIF2CQ99661 725 aa10.6□□□□□ -0.71
SNRNP40-202ENST00000373720 ESYT1Q9BSJ8 1104 aa10.6□□□□□ -0.71
SNRNP40-202ENST00000373720 GPR108Q9NPR9 543 aa10.6□□□□□ -0.71
SNRNP40-202ENST00000373720 EXOC6BQ9Y2D4 811 aa10.6□□□□□ -0.71
SNRNP40-202ENST00000373720 LRP6O75581 1613 aa10.59□□□□□ -0.71
SNRNP40-202ENST00000373720 NEURL1BA8MQ27 555 aa10.59□□□□□ -0.71
SNRNP40-202ENST00000373720 IFIT2P09913 472 aaKnown RBP10.59□□□□□ -0.71
SNRNP40-202ENST00000373720 HSP90B1P14625 803 aaKnown RBP10.59□□□□□ -0.71
SNRNP40-202ENST00000373720 CHMLP26374 656 aa10.59□□□□□ -0.71
SNRNP40-202ENST00000373720 HSPA2P54652 639 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms