RNA–Protein interactions for RNA: ENST00000373264.4

CDK9-201, Transcript of cyclin dependent kinase 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDK9, Length 2,463 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK9-201ENST00000373264 SIL1Q9H173 461 aa28.93■■■□□ 2.22
CDK9-201ENST00000373264 CPA1P15085 419 aa28.93■■■□□ 2.22
CDK9-201ENST00000373264 PHKG2P15735 406 aa28.93■■■□□ 2.22
CDK9-201ENST00000373264 CNTROBQ8N137 903 aa28.93■■■□□ 2.22
CDK9-201ENST00000373264 LSG1Q9H089 658 aaKnown RBP28.93■■■□□ 2.22
CDK9-201ENST00000373264 FOXD4L6Q3SYB3 417 aaPredicted RBP28.92■■■□□ 2.22
CDK9-201ENST00000373264 FOXD4L3Q6VB84 417 aaPredicted RBP28.92■■■□□ 2.22
CDK9-201ENST00000373264 CHMP4AQ9BY43 222 aa28.92■■■□□ 2.22
CDK9-201ENST00000373264 C5P01031 1676 aa28.92■■■□□ 2.22
CDK9-201ENST00000373264 LINS1Q8NG48 757 aa28.92■■■□□ 2.22
CDK9-201ENST00000373264 RBM27Q9P2N5 1060 aaKnown RBP28.92■■■□□ 2.22
CDK9-201ENST00000373264 NSFL1CQ9UNZ2 370 aaKnown RBP28.92■■■□□ 2.22
CDK9-201ENST00000373264 MST1RQ04912 1400 aa28.91■■■□□ 2.22
CDK9-201ENST00000373264 CUL4AQ13619 759 aa28.91■■■□□ 2.22
CDK9-201ENST00000373264 CLASRPQ8N2M8 674 aaKnown RBP28.91■■■□□ 2.22
CDK9-201ENST00000373264 GPT2Q8TD30 523 aa28.91■■■□□ 2.22
CDK9-201ENST00000373264 SASH1O94885 1247 aa28.91■■■□□ 2.22
CDK9-201ENST00000373264 RIC3Q7Z5B4 369 aa28.91■■■□□ 2.22
CDK9-201ENST00000373264 XAGE3Q8WTP9 111 aa28.91■■■□□ 2.22
CDK9-201ENST00000373264 USP16Q9Y5T5 823 aa28.91■■■□□ 2.22
CDK9-201ENST00000373264 SNX14Q9Y5W7 946 aa28.91■■■□□ 2.22
CDK9-201ENST00000373264 RAD50Q92878 1312 aa28.91■■■□□ 2.22
CDK9-201ENST00000373264 PTMSP20962 102 aa28.9■■■□□ 2.22
CDK9-201ENST00000373264 HSP90AB4PQ58FF6 505 aa28.9■■■□□ 2.22
CDK9-201ENST00000373264 AACSQ86V21 672 aa28.9■■■□□ 2.22
CDK9-201ENST00000373264 TLR7Q9NYK1 1049 aaKnown RBP28.9■■■□□ 2.22
CDK9-201ENST00000373264 ZBTB4Q9P1Z0 1013 aaPredicted RBP28.9■■■□□ 2.22
CDK9-201ENST00000373264 TATP17735 454 aaPredicted RBP28.89■■■□□ 2.22
CDK9-201ENST00000373264 EPHA10Q5JZY3 1008 aa28.89■■■□□ 2.22
CDK9-201ENST00000373264 COPS6Q7L5N1 327 aa28.89■■■□□ 2.22
CDK9-201ENST00000373264 CCDC8Q9H0W5 538 aaPredicted RBP28.89■■■□□ 2.22
CDK9-201ENST00000373264 CYP27B1O15528 508 aa28.88■■■□□ 2.21
CDK9-201ENST00000373264 KIF1AQ12756 1690 aa28.88■■■□□ 2.21
CDK9-201ENST00000373264 STRCP1A6NGW2 1772 aa28.88■■■□□ 2.21
CDK9-201ENST00000373264 ADAMTS7Q9UKP4 1686 aa28.88■■■□□ 2.21
CDK9-201ENST00000373264 PTH1RQ03431 593 aa28.88■■■□□ 2.21
CDK9-201ENST00000373264 EAF2Q96CJ1 260 aaPredicted RBP28.87■■■□□ 2.21
CDK9-201ENST00000373264 USP42Q9H9J4 1324 aaKnown RBP28.87■■■□□ 2.21
CDK9-201ENST00000373264 GLRX3O76003 335 aaKnown RBP28.87■■■□□ 2.21
CDK9-201ENST00000373264 IFIT2P09913 472 aaKnown RBP28.87■■■□□ 2.21
CDK9-201ENST00000373264 DDX54Q8TDD1 881 aaKnown RBP28.87■■■□□ 2.21
CDK9-201ENST00000373264 ANO8Q9HCE9 1232 aaPredicted RBP28.87■■■□□ 2.21
CDK9-201ENST00000373264 ECHDC1Q9NTX5 307 aa28.87■■■□□ 2.21
CDK9-201ENST00000373264 MYD88Q99836 296 aa28.86■■■□□ 2.21
CDK9-201ENST00000373264 TTC41PQ6P2S7 1318 aa28.86■■■□□ 2.21
CDK9-201ENST00000373264 MCM2P49736 904 aa28.85■■■□□ 2.21
CDK9-201ENST00000373264 IL17RAQ96F46 866 aa28.85■■■□□ 2.21
CDK9-201ENST00000373264 DDX58O95786 925 aaKnown RBP28.85■■■□□ 2.21
CDK9-201ENST00000373264 SCN11AQ9UI33 1791 aa28.85■■■□□ 2.21
CDK9-201ENST00000373264 BRD1O95696 1058 aa28.84■■■□□ 2.21
CDK9-201ENST00000373264 ZSCAN23Q3MJ62 389 aa28.84■■■□□ 2.21
CDK9-201ENST00000373264 NEURL1BA8MQ27 555 aa28.84■■■□□ 2.21
CDK9-201ENST00000373264 DIAPH3Q9NSV4 1193 aa28.84■■■□□ 2.21
CDK9-201ENST00000373264 COL9A3Q14050 684 aaPredicted RBP28.83■■■□□ 2.21
CDK9-201ENST00000373264 CRYBG1Q9Y4K1 1723 aa28.83■■■□□ 2.21
CDK9-201ENST00000373264 UTYO14607 1347 aa28.83■■■□□ 2.21
CDK9-201ENST00000373264 COL18A1P39060 1754 aa28.82■■■□□ 2.2
CDK9-201ENST00000373264 HSPA2P54652 639 aa28.82■■■□□ 2.2
CDK9-201ENST00000373264 AK2P54819 239 aa28.82■■■□□ 2.2
CDK9-201ENST00000373264 ADCK5Q3MIX3 580 aa28.82■■■□□ 2.2
CDK9-201ENST00000373264 IFNL2Q8IZJ0 200 aa28.82■■■□□ 2.2
CDK9-201ENST00000373264 ISY1Q9ULR0 285 aaKnown RBP28.82■■■□□ 2.2
CDK9-201ENST00000373264 KIAA1211Q6ZU35 1233 aa28.81■■■□□ 2.2
CDK9-201ENST00000373264 LRP10Q7Z4F1 713 aa28.81■■■□□ 2.2
CDK9-201ENST00000373264 FAM227BQ96M60 508 aa28.81■■■□□ 2.2
CDK9-201ENST00000373264 GDPD2Q9HCC8 539 aa28.81■■■□□ 2.2
CDK9-201ENST00000373264 GCKRQ14397 625 aa28.81■■■□□ 2.2
CDK9-201ENST00000373264 TTC14Q96N46 770 aa28.81■■■□□ 2.2
CDK9-201ENST00000373264 G3BP1Q13283 466 aaKnown RBP eCLIP28.8■■■□□ 2.2
CDK9-201ENST00000373264 ATP5J2-PTCD1G3V325 749 aa28.8■■■□□ 2.2
CDK9-201ENST00000373264 PTCD1O75127 700 aaKnown RBP28.8■■■□□ 2.2
CDK9-201ENST00000373264 LARP1Q6PKG0 1096 aaKnown RBP28.8■■■□□ 2.2
CDK9-201ENST00000373264 RUFY3Q7L099 469 aa28.8■■■□□ 2.2
CDK9-201ENST00000373264 LARGE1O95461 756 aa28.79■■■□□ 2.2
CDK9-201ENST00000373264 PRPF40BQ6NWY9 871 aaKnown RBP28.79■■■□□ 2.2
CDK9-201ENST00000373264 INTS4Q96HW7 963 aaKnown RBP28.79■■■□□ 2.2
CDK9-201ENST00000373264 BOLA2Q9H3K6 86 aa28.79■■■□□ 2.2
CDK9-201ENST00000373264 TMEM63CQ9P1W3 806 aa28.79■■■□□ 2.2
CDK9-201ENST00000373264 ERBB4Q15303 1308 aa28.79■■■□□ 2.2
CDK9-201ENST00000373264 CASTP20810 708 aaKnown RBP28.78■■■□□ 2.2
CDK9-201ENST00000373264 ERC1Q8IUD2 1116 aa28.78■■■□□ 2.2
CDK9-201ENST00000373264 EDC3Q96F86 508 aaKnown RBP28.78■■■□□ 2.2
CDK9-201ENST00000373264 METTL22Q9BUU2 404 aaPredicted RBP28.78■■■□□ 2.2
CDK9-201ENST00000373264 ANKRD13DQ6ZTN6 518 aa28.77■■■□□ 2.2
CDK9-201ENST00000373264 TTC5Q8N0Z6 440 aa28.77■■■□□ 2.2
CDK9-201ENST00000373264 NDUFB9Q9Y6M9 179 aa28.77■■■□□ 2.2
CDK9-201ENST00000373264 NASPP49321 788 aaPredicted RBP28.76■■■□□ 2.19
CDK9-201ENST00000373264 NEXNQ0ZGT2 675 aa28.76■■■□□ 2.19
CDK9-201ENST00000373264 PRIM1P49642 420 aaKnown RBP28.76■■■□□ 2.19
CDK9-201ENST00000373264 NMIQ13287 307 aaPredicted RBP28.75■■■□□ 2.19
CDK9-201ENST00000373264 DCAF5Q96JK2 942 aa28.75■■■□□ 2.19
CDK9-201ENST00000373264 SNRPA1P09661 255 aaKnown RBP28.75■■■□□ 2.19
CDK9-201ENST00000373264 ZNF445P59923 1031 aa28.75■■■□□ 2.19
CDK9-201ENST00000373264 UBE3BQ7Z3V4 1068 aa28.75■■■□□ 2.19
CDK9-201ENST00000373264 GPATCH3Q96I76 525 aa28.75■■■□□ 2.19
CDK9-201ENST00000373264 TPRNQ4KMQ1 711 aa28.74■■■□□ 2.19
CDK9-201ENST00000373264 RBSNQ9H1K0 784 aa28.74■■■□□ 2.19
CDK9-201ENST00000373264 TNS3Q68CZ2 1445 aa28.74■■■□□ 2.19
CDK9-201ENST00000373264 RPAP1Q9BWH6 1393 aaPredicted RBP28.74■■■□□ 2.19
CDK9-201ENST00000373264 EPB41L2O43491 1005 aaKnown RBP28.74■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms