RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 TAF4BQ92750 862 aa18.47■□□□□ 0.55
COL17A1-202ENST00000369733 C14orf93Q9H972 538 aaKnown RBP18.47■□□□□ 0.55
COL17A1-202ENST00000369733 TAX1BP1Q86VP1 789 aa18.46■□□□□ 0.55
COL17A1-202ENST00000369733 AIDAQ96BJ3 306 aa18.46■□□□□ 0.55
COL17A1-202ENST00000369733 NEK1Q96PY6 1258 aa18.46■□□□□ 0.55
COL17A1-202ENST00000369733 DNAJC25Q9H1X3 360 aa18.46■□□□□ 0.55
COL17A1-202ENST00000369733 GOLGA8BA8MQT2 603 aa18.46■□□□□ 0.55
COL17A1-202ENST00000369733 PER1O15534 1290 aaPredicted RBP18.46■□□□□ 0.55
COL17A1-202ENST00000369733 IFIT1P09914 478 aaKnown RBP18.46■□□□□ 0.55
COL17A1-202ENST00000369733 ZMYM4Q5VZL5 1548 aa18.46■□□□□ 0.55
COL17A1-202ENST00000369733 HMG20BQ9P0W2 317 aa18.46■□□□□ 0.55
COL17A1-202ENST00000369733 ISM2Q6H9L7 571 aa18.46■□□□□ 0.55
COL17A1-202ENST00000369733 NUP88Q99567 741 aaPredicted RBP18.46■□□□□ 0.55
COL17A1-202ENST00000369733 ZHX3Q9H4I2 956 aa18.46■□□□□ 0.55
COL17A1-202ENST00000369733 GPATCH8Q9UKJ3 1502 aaKnown RBP18.46■□□□□ 0.55
COL17A1-202ENST00000369733 SMARCC1Q92922 1105 aaPredicted RBP18.46■□□□□ 0.54
COL17A1-202ENST00000369733 FAM107BQ9H098 131 aa18.46■□□□□ 0.54
COL17A1-202ENST00000369733 RHPN1Q8TCX5 695 aa18.45■□□□□ 0.54
COL17A1-202ENST00000369733 USP26Q9BXU7 913 aa18.45■□□□□ 0.54
COL17A1-202ENST00000369733 PTGS1P23219 599 aa18.45■□□□□ 0.54
COL17A1-202ENST00000369733 TYRO3Q06418 890 aa18.45■□□□□ 0.54
COL17A1-202ENST00000369733 MYD88Q99836 296 aa18.45■□□□□ 0.54
COL17A1-202ENST00000369733 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.45■□□□□ 0.54
COL17A1-202ENST00000369733 V9GYY5 206 aaPredicted RBP18.45■□□□□ 0.54
COL17A1-202ENST00000369733 SAMD1Q6SPF0 538 aaPredicted RBP18.45■□□□□ 0.54
COL17A1-202ENST00000369733 SLU7O95391 586 aaKnown RBP18.45■□□□□ 0.54
COL17A1-202ENST00000369733 PLEKHM2Q8IWE5 1019 aa18.45■□□□□ 0.54
COL17A1-202ENST00000369733 CCDC12Q8WUD4 166 aaPredicted RBP18.45■□□□□ 0.54
COL17A1-202ENST00000369733 DCTPP1Q9H773 170 aa18.45■□□□□ 0.54
COL17A1-202ENST00000369733 ZSWIM4Q9H7M6 989 aa18.44■□□□□ 0.54
COL17A1-202ENST00000369733 POLR3DP05423 398 aaPredicted RBP18.44■□□□□ 0.54
COL17A1-202ENST00000369733 SOGA3Q5TF21 947 aa18.44■□□□□ 0.54
COL17A1-202ENST00000369733 DNAI1Q9UI46 699 aa18.44■□□□□ 0.54
COL17A1-202ENST00000369733 RAPGEF3O95398 923 aa18.43■□□□□ 0.54
COL17A1-202ENST00000369733 C8orf58Q8NAV2 365 aa18.43■□□□□ 0.54
COL17A1-202ENST00000369733 PIBF1Q8WXW3 757 aa18.43■□□□□ 0.54
COL17A1-202ENST00000369733 CCDC85AQ96PX6 553 aaPredicted RBP18.43■□□□□ 0.54
COL17A1-202ENST00000369733 INTS4Q96HW7 963 aaKnown RBP18.43■□□□□ 0.54
COL17A1-202ENST00000369733 YEATS4O95619 227 aa18.43■□□□□ 0.54
COL17A1-202ENST00000369733 CFAP43Q8NDM7 1665 aa18.43■□□□□ 0.54
COL17A1-202ENST00000369733 IKQ13123 557 aaPredicted RBP18.43■□□□□ 0.54
COL17A1-202ENST00000369733 TCOF1Q13428 1488 aaKnown RBP18.43■□□□□ 0.54
COL17A1-202ENST00000369733 IGSF3O75054 1194 aa18.43■□□□□ 0.54
COL17A1-202ENST00000369733 PPFIA3O75145 1194 aa18.43■□□□□ 0.54
COL17A1-202ENST00000369733 MPHOSPH8Q99549 860 aa18.43■□□□□ 0.54
COL17A1-202ENST00000369733 ENOX2Q16206 610 aaKnown RBP18.42■□□□□ 0.54
COL17A1-202ENST00000369733 AKAP2Q9Y2D5 859 aa18.42■□□□□ 0.54
COL17A1-202ENST00000369733 ZNF213O14771 459 aa18.42■□□□□ 0.54
COL17A1-202ENST00000369733 OGFRQ9NZT2 677 aa18.42■□□□□ 0.54
COL17A1-202ENST00000369733 PIK3R4Q99570 1358 aa18.42■□□□□ 0.54
COL17A1-202ENST00000369733 CTR9Q6PD62 1173 aa18.42■□□□□ 0.54
COL17A1-202ENST00000369733 UBASH3AP57075 661 aa18.41■□□□□ 0.54
COL17A1-202ENST00000369733 ZFP91Q96JP5 570 aaPredicted RBP18.41■□□□□ 0.54
COL17A1-202ENST00000369733 DBF4Q9UBU7 674 aaPredicted RBP18.41■□□□□ 0.54
COL17A1-202ENST00000369733 AOPEPQ8N6M6 819 aa18.41■□□□□ 0.54
COL17A1-202ENST00000369733 USHBP1Q8N6Y0 703 aa18.41■□□□□ 0.54
COL17A1-202ENST00000369733 ARFGAP3Q9NP61 516 aa18.41■□□□□ 0.54
COL17A1-202ENST00000369733 USP16Q9Y5T5 823 aa18.41■□□□□ 0.54
COL17A1-202ENST00000369733 ZNF445P59923 1031 aa18.41■□□□□ 0.54
COL17A1-202ENST00000369733 SLC26A8Q96RN1 970 aa18.41■□□□□ 0.54
COL17A1-202ENST00000369733 FEZ1Q99689 392 aa18.41■□□□□ 0.54
COL17A1-202ENST00000369733 NEFHP12036 1026 aa18.41■□□□□ 0.54
COL17A1-202ENST00000369733 TCEANC2Q96MN5 208 aa18.41■□□□□ 0.54
COL17A1-202ENST00000369733 SSBP05455 408 aaKnown RBP eCLIP18.4■□□□□ 0.54
COL17A1-202ENST00000369733 FKBP15Q5T1M5 1219 aa18.4■□□□□ 0.54
COL17A1-202ENST00000369733 BMP2KQ9NSY1 1161 aaPredicted RBP18.4■□□□□ 0.54
COL17A1-202ENST00000369733 ORC3Q9UBD5 711 aaPredicted RBP18.4■□□□□ 0.54
COL17A1-202ENST00000369733 RBM8AQ9Y5S9 174 aaKnown RBP18.4■□□□□ 0.54
COL17A1-202ENST00000369733 SSRP1Q08945 709 aaKnown RBP18.4■□□□□ 0.54
COL17A1-202ENST00000369733 CEP85Q6P2H3 762 aa18.4■□□□□ 0.54
COL17A1-202ENST00000369733 CCDC196A0A1B0GTZ2 297 aa18.4■□□□□ 0.54
COL17A1-202ENST00000369733 WASLO00401 505 aaPredicted RBP18.4■□□□□ 0.54
COL17A1-202ENST00000369733 FBLN1P23142 703 aa18.4■□□□□ 0.54
COL17A1-202ENST00000369733 BRF1Q92994 677 aa18.4■□□□□ 0.54
COL17A1-202ENST00000369733 PHAXQ9H814 394 aaKnown RBP18.4■□□□□ 0.54
COL17A1-202ENST00000369733 SLC12A7Q9Y666 1083 aa18.4■□□□□ 0.54
COL17A1-202ENST00000369733 AK2P54819 239 aa18.39■□□□□ 0.54
COL17A1-202ENST00000369733 MICALCLQ6ZW33 695 aa18.39■□□□□ 0.54
COL17A1-202ENST00000369733 MAP3K2Q9Y2U5 619 aa18.39■□□□□ 0.54
COL17A1-202ENST00000369733 PEG3Q9GZU2 1588 aa18.39■□□□□ 0.54
COL17A1-202ENST00000369733 GOLGA8AA7E2F4 631 aa18.39■□□□□ 0.53
COL17A1-202ENST00000369733 IBSPP21815 317 aaPredicted RBP18.39■□□□□ 0.53
COL17A1-202ENST00000369733 METTL24Q5JXM2 366 aa18.39■□□□□ 0.53
COL17A1-202ENST00000369733 RNF187Q5TA31 235 aaPredicted RBP18.39■□□□□ 0.53
COL17A1-202ENST00000369733 CCDC102BQ68D86 513 aa18.39■□□□□ 0.53
COL17A1-202ENST00000369733 LRP2BPQ9P2M1 347 aa18.39■□□□□ 0.53
COL17A1-202ENST00000369733 TERF1P54274 439 aa18.39■□□□□ 0.53
COL17A1-202ENST00000369733 CCDC82Q8N4S0 544 aa18.39■□□□□ 0.53
COL17A1-202ENST00000369733 ATP8B2P98198 1209 aa18.39■□□□□ 0.53
COL17A1-202ENST00000369733 VAMP4O75379 141 aa18.39■□□□□ 0.53
COL17A1-202ENST00000369733 PAFAH1B1P43034 410 aa18.39■□□□□ 0.53
COL17A1-202ENST00000369733 HYPKQ9NX55 129 aa18.39■□□□□ 0.53
COL17A1-202ENST00000369733 EIF2AK4Q9P2K8 1649 aaKnown RBP18.38■□□□□ 0.53
COL17A1-202ENST00000369733 BBXQ8WY36 941 aaPredicted RBP18.38■□□□□ 0.53
COL17A1-202ENST00000369733 SEPT11Q9NVA2 429 aaKnown RBP18.38■□□□□ 0.53
COL17A1-202ENST00000369733 USO1O60763 962 aaKnown RBP18.38■□□□□ 0.53
COL17A1-202ENST00000369733 SEPT7Q16181 437 aaKnown RBP18.38■□□□□ 0.53
COL17A1-202ENST00000369733 MRPS27Q92552 414 aaKnown RBP18.38■□□□□ 0.53
COL17A1-202ENST00000369733 TTC21BQ7Z4L5 1316 aa18.38■□□□□ 0.53
COL17A1-202ENST00000369733 PI4KAP2A4QPH2 592 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms