RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 APBA3O96018 575 aa13.62□□□□□ -0.23
SYNE1-204ENST00000367248 LDHCP07864 332 aa13.62□□□□□ -0.23
SYNE1-204ENST00000367248 PDIA4P13667 645 aaKnown RBP13.62□□□□□ -0.23
SYNE1-204ENST00000367248 MEIS3Q99687 375 aa13.62□□□□□ -0.23
SYNE1-204ENST00000367248 PER1O15534 1290 aaPredicted RBP13.62□□□□□ -0.23
SYNE1-204ENST00000367248 NFATC2IPQ8NCF5 419 aa13.62□□□□□ -0.23
SYNE1-204ENST00000367248 CCDC24Q8N4L8 307 aa13.62□□□□□ -0.23
SYNE1-204ENST00000367248 CA8P35219 290 aa13.62□□□□□ -0.23
SYNE1-204ENST00000367248 LINS1Q8NG48 757 aa13.62□□□□□ -0.23
SYNE1-204ENST00000367248 RHPN1Q8TCX5 695 aa13.62□□□□□ -0.23
SYNE1-204ENST00000367248 PICALMQ13492 652 aa13.61□□□□□ -0.23
SYNE1-204ENST00000367248 EVI5LQ96CN4 794 aa13.61□□□□□ -0.23
SYNE1-204ENST00000367248 ABCC1P33527 1531 aa13.61□□□□□ -0.23
SYNE1-204ENST00000367248 ZFYVE9O95405 1425 aa13.61□□□□□ -0.23
SYNE1-204ENST00000367248 MRE11P49959 708 aa13.61□□□□□ -0.23
SYNE1-204ENST00000367248 SLF2Q8IX21 1173 aa13.61□□□□□ -0.23
SYNE1-204ENST00000367248 JDP2Q8WYK2 163 aa13.61□□□□□ -0.23
SYNE1-204ENST00000367248 OGFOD1Q8N543 542 aa13.61□□□□□ -0.23
SYNE1-204ENST00000367248 DHX8Q14562 1220 aaKnown RBP13.61□□□□□ -0.23
SYNE1-204ENST00000367248 GOLGA6L1Q8N7Z2 621 aa13.61□□□□□ -0.23
SYNE1-204ENST00000367248 DDX11Q96FC9 970 aa13.61□□□□□ -0.23
SYNE1-204ENST00000367248 NSFL1CQ9UNZ2 370 aaKnown RBP13.61□□□□□ -0.23
SYNE1-204ENST00000367248 CCDC152Q4G0S7 254 aa13.6□□□□□ -0.23
SYNE1-204ENST00000367248 NLRP3Q96P20 1036 aa13.6□□□□□ -0.23
SYNE1-204ENST00000367248 KIF21AQ7Z4S6 1674 aa13.6□□□□□ -0.23
SYNE1-204ENST00000367248 GOLIM4O00461 696 aa13.6□□□□□ -0.23
SYNE1-204ENST00000367248 CCDC70Q6NSX1 233 aa13.6□□□□□ -0.23
SYNE1-204ENST00000367248 LMBR1LQ6UX01 489 aa13.6□□□□□ -0.23
SYNE1-204ENST00000367248 RNF41Q9H4P4 317 aaPredicted RBP13.6□□□□□ -0.23
SYNE1-204ENST00000367248 FAM13BQ9NYF5 915 aa13.6□□□□□ -0.23
SYNE1-204ENST00000367248 ABCA5Q8WWZ7 1642 aa13.6□□□□□ -0.23
SYNE1-204ENST00000367248 SKAP1Q86WV1 359 aa13.6□□□□□ -0.23
SYNE1-204ENST00000367248 MRPL50Q8N5N7 158 aaKnown RBP13.6□□□□□ -0.23
SYNE1-204ENST00000367248 SEC63Q9UGP8 760 aaKnown RBP13.6□□□□□ -0.23
SYNE1-204ENST00000367248 TTF1Q15361 905 aaPredicted RBP13.6□□□□□ -0.23
SYNE1-204ENST00000367248 PIK3C2GO75747 1445 aa13.6□□□□□ -0.23
SYNE1-204ENST00000367248 BMP2KLQ5H9B9 411 aa13.59□□□□□ -0.23
SYNE1-204ENST00000367248 MAP3K5Q99683 1374 aa13.59□□□□□ -0.23
SYNE1-204ENST00000367248 TANGO6Q9C0B7 1094 aa13.59□□□□□ -0.23
SYNE1-204ENST00000367248 UQCRFS1P1P0C7P4 283 aa13.59□□□□□ -0.23
SYNE1-204ENST00000367248 TRIM5Q9C035 493 aa13.59□□□□□ -0.23
SYNE1-204ENST00000367248 DZIP3Q86Y13 1208 aaKnown RBP13.59□□□□□ -0.23
SYNE1-204ENST00000367248 CTCFLQ8NI51 663 aaPredicted RBP13.59□□□□□ -0.23
SYNE1-204ENST00000367248 CCNL1Q9UK58 526 aaPredicted RBP13.59□□□□□ -0.23
SYNE1-204ENST00000367248 GPR162Q16538 588 aa13.59□□□□□ -0.23
SYNE1-204ENST00000367248 SPATA32Q96LK8 384 aa13.59□□□□□ -0.23
SYNE1-204ENST00000367248 HMGB1P09429 215 aaKnown RBP13.59□□□□□ -0.23
SYNE1-204ENST00000367248 MSL1Q68DK7 614 aa13.59□□□□□ -0.23
SYNE1-204ENST00000367248 PCDH11XQ9BZA7 1347 aa13.58□□□□□ -0.23
SYNE1-204ENST00000367248 PCDH11YQ9BZA8 1340 aa13.58□□□□□ -0.23
SYNE1-204ENST00000367248 CCDC196A0A1B0GTZ2 297 aa13.58□□□□□ -0.23
SYNE1-204ENST00000367248 IQCA1Q86XH1 822 aa13.58□□□□□ -0.23
SYNE1-204ENST00000367248 BIN2Q9UBW5 565 aaPredicted RBP13.58□□□□□ -0.23
SYNE1-204ENST00000367248 GRM8O00222 908 aa13.58□□□□□ -0.24
SYNE1-204ENST00000367248 ZNF213O14771 459 aa13.58□□□□□ -0.24
SYNE1-204ENST00000367248 NASPP49321 788 aaPredicted RBP13.58□□□□□ -0.24
SYNE1-204ENST00000367248 SYCP1Q15431 976 aa13.58□□□□□ -0.24
SYNE1-204ENST00000367248 ANKRD18AQ8IVF6 992 aa13.58□□□□□ -0.24
SYNE1-204ENST00000367248 CDCA7Q9BWT1 371 aaPredicted RBP13.58□□□□□ -0.24
SYNE1-204ENST00000367248 CFAP45Q9UL16 551 aa13.58□□□□□ -0.24
SYNE1-204ENST00000367248 VAMP4O75379 141 aa13.58□□□□□ -0.24
SYNE1-204ENST00000367248 LTKP29376 864 aa13.58□□□□□ -0.24
SYNE1-204ENST00000367248 PLEKHG3A1L390 1219 aa13.58□□□□□ -0.24
SYNE1-204ENST00000367248 ANKRD44Q8N8A2 993 aa13.58□□□□□ -0.24
SYNE1-204ENST00000367248 PLEKHH1Q9ULM0 1364 aa13.58□□□□□ -0.24
SYNE1-204ENST00000367248 CTTNBP2Q8WZ74 1663 aa13.58□□□□□ -0.24
SYNE1-204ENST00000367248 PPFIA3O75145 1194 aa13.57□□□□□ -0.24
SYNE1-204ENST00000367248 FERMT3Q86UX7 667 aa13.57□□□□□ -0.24
SYNE1-204ENST00000367248 RNMTO43148 476 aaKnown RBP13.57□□□□□ -0.24
SYNE1-204ENST00000367248 CCDC83Q8IWF9 413 aa13.57□□□□□ -0.24
SYNE1-204ENST00000367248 TSPY26PQ9H489 355 aa13.57□□□□□ -0.24
SYNE1-204ENST00000367248 CABP5Q9NP86 173 aa13.57□□□□□ -0.24
SYNE1-204ENST00000367248 YEATS2Q9ULM3 1422 aa13.57□□□□□ -0.24
SYNE1-204ENST00000367248 PPM1FP49593 454 aaPredicted RBP13.57□□□□□ -0.24
SYNE1-204ENST00000367248 TSPYL6Q8N831 410 aa13.57□□□□□ -0.24
SYNE1-204ENST00000367248 SH2B1Q9NRF2 756 aaPredicted RBP13.57□□□□□ -0.24
SYNE1-204ENST00000367248 HDAC1Q13547 482 aaPredicted RBP13.57□□□□□ -0.24
SYNE1-204ENST00000367248 FILIP1LQ4L180 1135 aa13.57□□□□□ -0.24
SYNE1-204ENST00000367248 TRAPPC3LQ5T215 181 aa13.57□□□□□ -0.24
SYNE1-204ENST00000367248 ATP2B3Q16720 1220 aa13.57□□□□□ -0.24
SYNE1-204ENST00000367248 KRT24Q2M2I5 525 aa13.57□□□□□ -0.24
SYNE1-204ENST00000367248 HELBQ8NG08 1087 aaPredicted RBP13.57□□□□□ -0.24
SYNE1-204ENST00000367248 SBNO1A3KN83 1393 aa13.57□□□□□ -0.24
SYNE1-204ENST00000367248 IL15P40933 162 aaPredicted RBP13.56□□□□□ -0.24
SYNE1-204ENST00000367248 ATP8B2P98198 1209 aa13.56□□□□□ -0.24
SYNE1-204ENST00000367248 CCDC144CPQ8IYA2 1237 aa13.56□□□□□ -0.24
SYNE1-204ENST00000367248 SLAIN2Q9P270 581 aa13.56□□□□□ -0.24
SYNE1-204ENST00000367248 HDAC9Q9UKV0 1011 aa13.56□□□□□ -0.24
SYNE1-204ENST00000367248 RSPH6AQ9H0K4 717 aa13.56□□□□□ -0.24
SYNE1-204ENST00000367248 PRKG1Q13976 671 aa13.56□□□□□ -0.24
SYNE1-204ENST00000367248 PLS1Q14651 629 aa13.56□□□□□ -0.24
SYNE1-204ENST00000367248 MAGEC2Q9UBF1 373 aaPredicted RBP13.56□□□□□ -0.24
SYNE1-204ENST00000367248 NPC1L1Q9UHC9 1359 aa13.56□□□□□ -0.24
SYNE1-204ENST00000367248 LMOD1P29536 600 aaPredicted RBP13.56□□□□□ -0.24
SYNE1-204ENST00000367248 SPTY2D1Q68D10 685 aaPredicted RBP13.56□□□□□ -0.24
SYNE1-204ENST00000367248 RAB11FIP4Q86YS3 637 aa13.56□□□□□ -0.24
SYNE1-204ENST00000367248 TNMDQ9H2S6 317 aa13.56□□□□□ -0.24
SYNE1-204ENST00000367248 BMP2KQ9NSY1 1161 aaPredicted RBP13.56□□□□□ -0.24
SYNE1-204ENST00000367248 EDC4Q6P2E9 1401 aaKnown RBP13.56□□□□□ -0.24
SYNE1-204ENST00000367248 ZC3H12CQ9C0D7 883 aaKnown RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms