RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 PI4KAP2A4QPH2 592 aa18.11■□□□□ 0.49
PTPRF-201ENST00000359947 PI4KAP1Q8N8J0 262 aa18.11■□□□□ 0.49
PTPRF-201ENST00000359947 TAF4BQ92750 862 aa18.11■□□□□ 0.49
PTPRF-201ENST00000359947 RNF41Q9H4P4 317 aaPredicted RBP18.11■□□□□ 0.49
PTPRF-201ENST00000359947 STX8Q9UNK0 236 aa18.11■□□□□ 0.49
PTPRF-201ENST00000359947 DNMBPQ6XZF7 1577 aa18.1■□□□□ 0.49
PTPRF-201ENST00000359947 USP8P40818 1118 aa18.1■□□□□ 0.49
PTPRF-201ENST00000359947 CTNNBL1Q8WYA6 563 aaPredicted RBP18.1■□□□□ 0.49
PTPRF-201ENST00000359947 CCDC152Q4G0S7 254 aa18.1■□□□□ 0.49
PTPRF-201ENST00000359947 TMEM67Q5HYA8 995 aa18.1■□□□□ 0.49
PTPRF-201ENST00000359947 JAKMIP3Q5VZ66 844 aa18.1■□□□□ 0.49
PTPRF-201ENST00000359947 CKAP2LQ8IYA6 745 aa18.1■□□□□ 0.49
PTPRF-201ENST00000359947 RAB34Q9BZG1 259 aa18.1■□□□□ 0.49
PTPRF-201ENST00000359947 PANK2Q9BZ23 570 aa18.1■□□□□ 0.49
PTPRF-201ENST00000359947 NOS1P29475 1434 aa18.09■□□□□ 0.49
PTPRF-201ENST00000359947 PDE4BQ07343 736 aa18.09■□□□□ 0.49
PTPRF-201ENST00000359947 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.09■□□□□ 0.49
PTPRF-201ENST00000359947 BAG4O95429 457 aaKnown RBP18.09■□□□□ 0.49
PTPRF-201ENST00000359947 OGFOD1Q8N543 542 aa18.09■□□□□ 0.49
PTPRF-201ENST00000359947 MMRN2Q9H8L6 949 aa18.09■□□□□ 0.49
PTPRF-201ENST00000359947 DDB1Q16531 1140 aa18.09■□□□□ 0.49
PTPRF-201ENST00000359947 PUF60Q9UHX1 559 aaKnown RBP18.09■□□□□ 0.49
PTPRF-201ENST00000359947 TIAM1Q13009 1591 aa18.09■□□□□ 0.49
PTPRF-201ENST00000359947 SNRPA1P09661 255 aaKnown RBP18.09■□□□□ 0.49
PTPRF-201ENST00000359947 MICU3Q86XE3 530 aa18.09■□□□□ 0.49
PTPRF-201ENST00000359947 LDHCP07864 332 aa18.08■□□□□ 0.49
PTPRF-201ENST00000359947 SMTNL1A8MU46 457 aa18.08■□□□□ 0.49
PTPRF-201ENST00000359947 RIMBP2O15034 1052 aa18.08■□□□□ 0.48
PTPRF-201ENST00000359947 SKAP1Q86WV1 359 aa18.08■□□□□ 0.48
PTPRF-201ENST00000359947 NIP7Q9Y221 180 aaKnown RBP eCLIP18.08■□□□□ 0.489e-8■□□□□ 8.2
PTPRF-201ENST00000359947 KIAA0586Q9BVV6 1533 aa18.08■□□□□ 0.48
PTPRF-201ENST00000359947 TCERG1LQ5VWI1 586 aa18.07■□□□□ 0.48
PTPRF-201ENST00000359947 MFSD6Q6ZSS7 791 aa18.07■□□□□ 0.48
PTPRF-201ENST00000359947 SYCP3Q8IZU3 236 aa18.07■□□□□ 0.48
PTPRF-201ENST00000359947 FKBP15Q5T1M5 1219 aa18.07■□□□□ 0.48
PTPRF-201ENST00000359947 CCDC112Q8NEF3 446 aa18.07■□□□□ 0.48
PTPRF-201ENST00000359947 JAG2Q9Y219 1238 aa18.07■□□□□ 0.48
PTPRF-201ENST00000359947 IDEP14735 1019 aa18.06■□□□□ 0.48
PTPRF-201ENST00000359947 FERMT2Q96AC1 680 aa18.06■□□□□ 0.48
PTPRF-201ENST00000359947 BICD1Q96G01 975 aa18.06■□□□□ 0.48
PTPRF-201ENST00000359947 TOP2BQ02880 1626 aa18.06■□□□□ 0.48
PTPRF-201ENST00000359947 POLD1P28340 1107 aa18.06■□□□□ 0.48
PTPRF-201ENST00000359947 TTF1Q15361 905 aaPredicted RBP18.06■□□□□ 0.48
PTPRF-201ENST00000359947 ARHGAP29Q52LW3 1261 aa18.06■□□□□ 0.48
PTPRF-201ENST00000359947 TMX1Q9H3N1 280 aa18.06■□□□□ 0.48
PTPRF-201ENST00000359947 RBM10P98175 930 aaKnown RBP18.06■□□□□ 0.48
PTPRF-201ENST00000359947 ANKRD13DQ6ZTN6 518 aa18.06■□□□□ 0.48
PTPRF-201ENST00000359947 HDAC9Q9UKV0 1011 aa18.06■□□□□ 0.48
PTPRF-201ENST00000359947 TSPY3P0CV98 308 aa18.06■□□□□ 0.48
PTPRF-201ENST00000359947 TSPY8P0CW00 308 aa18.06■□□□□ 0.48
PTPRF-201ENST00000359947 DENND4BO75064 1496 aaPredicted RBP18.06■□□□□ 0.48
PTPRF-201ENST00000359947 MAP3K11Q16584 847 aa18.05■□□□□ 0.48
PTPRF-201ENST00000359947 RARSP54136 660 aaKnown RBP18.05■□□□□ 0.48
PTPRF-201ENST00000359947 CPLX3Q8WVH0 158 aa18.05■□□□□ 0.48
PTPRF-201ENST00000359947 CHPF2Q9P2E5 772 aa18.05■□□□□ 0.48
PTPRF-201ENST00000359947 SPA17Q15506 151 aa18.05■□□□□ 0.48
PTPRF-201ENST00000359947 SYCE3A1L190 88 aa18.05■□□□□ 0.48
PTPRF-201ENST00000359947 CETN2P41208 172 aa18.05■□□□□ 0.48
PTPRF-201ENST00000359947 ISM2Q6H9L7 571 aa18.05■□□□□ 0.48
PTPRF-201ENST00000359947 CCDC113Q9H0I3 377 aa18.05■□□□□ 0.48
PTPRF-201ENST00000359947 FANCAO15360 1455 aa18.05■□□□□ 0.48
PTPRF-201ENST00000359947 WDR97A6NE52 1622 aa18.05■□□□□ 0.48
PTPRF-201ENST00000359947 NLRP3Q96P20 1036 aa18.04■□□□□ 0.48
PTPRF-201ENST00000359947 C20orf194Q5TEA3 1177 aa18.04■□□□□ 0.48
PTPRF-201ENST00000359947 CRNKL1Q9BZJ0 848 aaKnown RBP18.04■□□□□ 0.48
PTPRF-201ENST00000359947 PARP3Q9Y6F1 533 aa18.04■□□□□ 0.48
PTPRF-201ENST00000359947 ABCC5O15440 1437 aa18.04■□□□□ 0.48
PTPRF-201ENST00000359947 CCDC178Q5BJE1 867 aa18.04■□□□□ 0.48
PTPRF-201ENST00000359947 PRKCSHP14314 528 aaPredicted RBP18.04■□□□□ 0.48
PTPRF-201ENST00000359947 SLC26A6Q9BXS9 759 aa18.04■□□□□ 0.48
PTPRF-201ENST00000359947 NCKAP5LQ9HCH0 1330 aa18.04■□□□□ 0.48
PTPRF-201ENST00000359947 CYP7A1P22680 504 aa18.03■□□□□ 0.48
PTPRF-201ENST00000359947 KIF5BP33176 963 aa18.03■□□□□ 0.48
PTPRF-201ENST00000359947 MAP3K9P80192 1104 aa18.03■□□□□ 0.48
PTPRF-201ENST00000359947 CNNM3Q8NE01 707 aa18.03■□□□□ 0.48
PTPRF-201ENST00000359947 LRRC59Q96AG4 307 aaKnown RBP18.03■□□□□ 0.48
PTPRF-201ENST00000359947 TNRQ92752 1358 aa18.03■□□□□ 0.48
PTPRF-201ENST00000359947 EZRP15311 586 aaKnown RBP18.03■□□□□ 0.48
PTPRF-201ENST00000359947 SIRT1Q96EB6 747 aa18.03■□□□□ 0.48
PTPRF-201ENST00000359947 ALDH1L2Q3SY69 923 aa18.03■□□□□ 0.48
PTPRF-201ENST00000359947 CALML4Q96GE6 196 aa18.03■□□□□ 0.48
PTPRF-201ENST00000359947 TDRD12Q587J7 1177 aaKnown RBP18.03■□□□□ 0.48
PTPRF-201ENST00000359947 GOPCQ9HD26 462 aa18.03■□□□□ 0.48
PTPRF-201ENST00000359947 HMGB1P09429 215 aaKnown RBP18.03■□□□□ 0.48
PTPRF-201ENST00000359947 XAGE3Q8WTP9 111 aa18.03■□□□□ 0.48
PTPRF-201ENST00000359947 COMMD10Q9Y6G5 202 aa18.03■□□□□ 0.48
PTPRF-201ENST00000359947 LEKR1Q6ZMV7 388 aa18.02■□□□□ 0.48
PTPRF-201ENST00000359947 MPHOSPH6Q99547 160 aaKnown RBP18.02■□□□□ 0.48
PTPRF-201ENST00000359947 USP16Q9Y5T5 823 aa18.02■□□□□ 0.48
PTPRF-201ENST00000359947 TTC21BQ7Z4L5 1316 aa18.02■□□□□ 0.48
PTPRF-201ENST00000359947 CTNNA2P26232 953 aa18.02■□□□□ 0.48
PTPRF-201ENST00000359947 GJA3Q9Y6H8 435 aa18.02■□□□□ 0.48
PTPRF-201ENST00000359947 BIN1O00499 593 aa18.02■□□□□ 0.47
PTPRF-201ENST00000359947 GSTO1P78417 241 aa18.02■□□□□ 0.47
PTPRF-201ENST00000359947 NBPF14Q5TI25 921 aa18.02■□□□□ 0.47
PTPRF-201ENST00000359947 EVI5LQ96CN4 794 aa18.02■□□□□ 0.47
PTPRF-201ENST00000359947 MBIPQ9NS73 344 aa18.02■□□□□ 0.47
PTPRF-201ENST00000359947 COPS6Q7L5N1 327 aa18.02■□□□□ 0.47
PTPRF-201ENST00000359947 BIN2Q9UBW5 565 aaPredicted RBP18.02■□□□□ 0.47
PTPRF-201ENST00000359947 C11orf95C9JLR9 678 aaPredicted RBP18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms