RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 LMBRD1Q9NUN5 540 aa18.06■□□□□ 0.48
VIPAS39-202ENST00000343765 GLRX3O76003 335 aaKnown RBP18.05■□□□□ 0.48
VIPAS39-202ENST00000343765 XAGE3Q8WTP9 111 aa18.05■□□□□ 0.48
VIPAS39-202ENST00000343765 LARP6Q9BRS8 491 aaKnown RBP18.05■□□□□ 0.48
VIPAS39-202ENST00000343765 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.05■□□□□ 0.48
VIPAS39-202ENST00000343765 JARID2Q92833 1246 aaPredicted RBP18.05■□□□□ 0.48
VIPAS39-202ENST00000343765 KAZALD1Q96I82 304 aa18.05■□□□□ 0.48
VIPAS39-202ENST00000343765 ZNF496Q96IT1 587 aaPredicted RBP18.05■□□□□ 0.48
VIPAS39-202ENST00000343765 RRAGDQ9NQL2 400 aaPredicted RBP18.05■□□□□ 0.48
VIPAS39-202ENST00000343765 DIAPH3Q9NSV4 1193 aa18.05■□□□□ 0.48
VIPAS39-202ENST00000343765 MEGF6O75095 1541 aa18.05■□□□□ 0.48
VIPAS39-202ENST00000343765 IGKV5-2P06315 115 aa18.04■□□□□ 0.48
VIPAS39-202ENST00000343765 FOXD4L6Q3SYB3 417 aaPredicted RBP18.04■□□□□ 0.48
VIPAS39-202ENST00000343765 FOXD4L3Q6VB84 417 aaPredicted RBP18.04■□□□□ 0.48
VIPAS39-202ENST00000343765 KIAA1211Q6ZU35 1233 aa18.04■□□□□ 0.48
VIPAS39-202ENST00000343765 KLHDC4Q8TBB5 520 aa18.04■□□□□ 0.48
VIPAS39-202ENST00000343765 RAD50Q92878 1312 aa18.04■□□□□ 0.48
VIPAS39-202ENST00000343765 KIF1AQ12756 1690 aa18.04■□□□□ 0.48
VIPAS39-202ENST00000343765 MST1RQ04912 1400 aa18.04■□□□□ 0.48
VIPAS39-202ENST00000343765 COPS6Q7L5N1 327 aa18.04■□□□□ 0.48
VIPAS39-202ENST00000343765 ECHDC1Q9NTX5 307 aa18.04■□□□□ 0.48
VIPAS39-202ENST00000343765 CAMTA1Q9Y6Y1 1673 aa18.04■□□□□ 0.48
VIPAS39-202ENST00000343765 MYD88Q99836 296 aa18.03■□□□□ 0.48
VIPAS39-202ENST00000343765 LSG1Q9H089 658 aaKnown RBP18.03■□□□□ 0.48
VIPAS39-202ENST00000343765 TTC41PQ6P2S7 1318 aa18.03■□□□□ 0.48
VIPAS39-202ENST00000343765 CCDC8Q9H0W5 538 aaPredicted RBP18.03■□□□□ 0.48
VIPAS39-202ENST00000343765 CUL4AQ13619 759 aa18.02■□□□□ 0.48
VIPAS39-202ENST00000343765 RASEFQ8IZ41 740 aa18.02■□□□□ 0.48
VIPAS39-202ENST00000343765 GPATCH3Q96I76 525 aa18.02■□□□□ 0.48
VIPAS39-202ENST00000343765 ISY1Q9ULR0 285 aaKnown RBP18.02■□□□□ 0.48
VIPAS39-202ENST00000343765 SNX14Q9Y5W7 946 aa18.02■□□□□ 0.48
VIPAS39-202ENST00000343765 G3BP1Q13283 466 aaKnown RBP eCLIP18.02■□□□□ 0.48
VIPAS39-202ENST00000343765 ERC1Q8IUD2 1116 aa18.02■□□□□ 0.48
VIPAS39-202ENST00000343765 IFNL2Q8IZJ0 200 aa18.02■□□□□ 0.48
VIPAS39-202ENST00000343765 TTC5Q8N0Z6 440 aa18.02■□□□□ 0.48
VIPAS39-202ENST00000343765 USP16Q9Y5T5 823 aa18.02■□□□□ 0.48
VIPAS39-202ENST00000343765 NEXNQ0ZGT2 675 aa18.02■□□□□ 0.47
VIPAS39-202ENST00000343765 RBM27Q9P2N5 1060 aaKnown RBP18.02■□□□□ 0.47
VIPAS39-202ENST00000343765 HDAC5Q9UQL6 1122 aa18.02■□□□□ 0.47
VIPAS39-202ENST00000343765 USP42Q9H9J4 1324 aaKnown RBP18.01■□□□□ 0.47
VIPAS39-202ENST00000343765 ALS2Q96Q42 1657 aa18.01■□□□□ 0.47
VIPAS39-202ENST00000343765 SASH1O94885 1247 aa18.01■□□□□ 0.47
VIPAS39-202ENST00000343765 CPA1P15085 419 aa18.01■□□□□ 0.47
VIPAS39-202ENST00000343765 TLR7Q9NYK1 1049 aaKnown RBP18.01■□□□□ 0.47
VIPAS39-202ENST00000343765 SIPA1L3O60292 1781 aaPredicted RBP18.01■□□□□ 0.47
VIPAS39-202ENST00000343765 CYP27B1O15528 508 aa18.01■□□□□ 0.47
VIPAS39-202ENST00000343765 LARP1Q6PKG0 1096 aaKnown RBP18.01■□□□□ 0.47
VIPAS39-202ENST00000343765 NEURL1BA8MQ27 555 aa18■□□□□ 0.47
VIPAS39-202ENST00000343765 GPT2Q8TD30 523 aa18■□□□□ 0.47
VIPAS39-202ENST00000343765 EAF2Q96CJ1 260 aaPredicted RBP18■□□□□ 0.47
VIPAS39-202ENST00000343765 PTH1RQ03431 593 aa17.99■□□□□ 0.47
VIPAS39-202ENST00000343765 ZSCAN23Q3MJ62 389 aa17.99■□□□□ 0.47
VIPAS39-202ENST00000343765 EPHA10Q5JZY3 1008 aa17.99■□□□□ 0.47
VIPAS39-202ENST00000343765 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.99■□□□□ 0.47
VIPAS39-202ENST00000343765 BRD1O95696 1058 aa17.99■□□□□ 0.47
VIPAS39-202ENST00000343765 DDX54Q8TDD1 881 aaKnown RBP17.99■□□□□ 0.47
VIPAS39-202ENST00000343765 C5P01031 1676 aa17.98■□□□□ 0.47
VIPAS39-202ENST00000343765 DTNBO60941 627 aa17.98■□□□□ 0.47
VIPAS39-202ENST00000343765 GCKRQ14397 625 aa17.98■□□□□ 0.47
VIPAS39-202ENST00000343765 INTS4Q96HW7 963 aaKnown RBP17.98■□□□□ 0.47
VIPAS39-202ENST00000343765 AK2P54819 239 aa17.98■□□□□ 0.47
VIPAS39-202ENST00000343765 NSFL1CQ9UNZ2 370 aaKnown RBP17.98■□□□□ 0.47
VIPAS39-202ENST00000343765 UTYO14607 1347 aa17.98■□□□□ 0.47
VIPAS39-202ENST00000343765 CASTP20810 708 aaKnown RBP17.97■□□□□ 0.47
VIPAS39-202ENST00000343765 PRPF40BQ6NWY9 871 aaKnown RBP17.97■□□□□ 0.47
VIPAS39-202ENST00000343765 ANKRD13DQ6ZTN6 518 aa17.97■□□□□ 0.47
VIPAS39-202ENST00000343765 RUFY2Q8WXA3 655 aa17.97■□□□□ 0.47
VIPAS39-202ENST00000343765 IL17RAQ96F46 866 aa17.97■□□□□ 0.47
VIPAS39-202ENST00000343765 BOLA2Q9H3K6 86 aa17.97■□□□□ 0.47
VIPAS39-202ENST00000343765 ATP5J2-PTCD1G3V325 749 aa17.97■□□□□ 0.47
VIPAS39-202ENST00000343765 PTCD1O75127 700 aaKnown RBP17.97■□□□□ 0.47
VIPAS39-202ENST00000343765 SNRPA1P09661 255 aaKnown RBP17.97■□□□□ 0.47
VIPAS39-202ENST00000343765 CABP4P57796 275 aa17.97■□□□□ 0.47
VIPAS39-202ENST00000343765 DCAF5Q96JK2 942 aa17.97■□□□□ 0.47
VIPAS39-202ENST00000343765 METTL22Q9BUU2 404 aaPredicted RBP17.97■□□□□ 0.47
VIPAS39-202ENST00000343765 NASPP49321 788 aaPredicted RBP17.96■□□□□ 0.47
VIPAS39-202ENST00000343765 CADPS2Q86UW7 1296 aa17.96■□□□□ 0.47
VIPAS39-202ENST00000343765 FAM227BQ96M60 508 aa17.96■□□□□ 0.47
VIPAS39-202ENST00000343765 TNS3Q68CZ2 1445 aa17.96■□□□□ 0.47
VIPAS39-202ENST00000343765 EPB41L2O43491 1005 aaKnown RBP17.96■□□□□ 0.47
VIPAS39-202ENST00000343765 EVI5LQ96CN4 794 aa17.96■□□□□ 0.47
VIPAS39-202ENST00000343765 ADAMTS7Q9UKP4 1686 aa17.96■□□□□ 0.47
VIPAS39-202ENST00000343765 FMNL2Q96PY5 1086 aa17.96■□□□□ 0.46
VIPAS39-202ENST00000343765 GDPD2Q9HCC8 539 aa17.96■□□□□ 0.46
VIPAS39-202ENST00000343765 RUFY3Q7L099 469 aa17.95■□□□□ 0.46
VIPAS39-202ENST00000343765 UBE3BQ7Z3V4 1068 aa17.95■□□□□ 0.46
VIPAS39-202ENST00000343765 JAKMIP1Q96N16 626 aaKnown RBP17.95■□□□□ 0.46
VIPAS39-202ENST00000343765 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.95■□□□□ 0.462e-6■■■■□ 24.3
VIPAS39-202ENST00000343765 SCN11AQ9UI33 1791 aa17.95■□□□□ 0.46
VIPAS39-202ENST00000343765 KCNJ4P48050 445 aa17.95■□□□□ 0.46
VIPAS39-202ENST00000343765 ADCK5Q3MIX3 580 aa17.95■□□□□ 0.46
VIPAS39-202ENST00000343765 TPRNQ4KMQ1 711 aa17.95■□□□□ 0.46
VIPAS39-202ENST00000343765 TTC14Q96N46 770 aa17.95■□□□□ 0.46
VIPAS39-202ENST00000343765 STRCP1A6NGW2 1772 aa17.94■□□□□ 0.46
VIPAS39-202ENST00000343765 NMIQ13287 307 aaPredicted RBP17.94■□□□□ 0.46
VIPAS39-202ENST00000343765 TRIM44Q96DX7 344 aaPredicted RBP17.94■□□□□ 0.46
VIPAS39-202ENST00000343765 ZNF445P59923 1031 aa17.93■□□□□ 0.46
VIPAS39-202ENST00000343765 LRP10Q7Z4F1 713 aa17.93■□□□□ 0.46
VIPAS39-202ENST00000343765 FSD1Q9BTV5 496 aa17.93■□□□□ 0.46
VIPAS39-202ENST00000343765 TMEM63CQ9P1W3 806 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms