RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 NBPF14Q5TI25 921 aa15.98■□□□□ 0.15
COL18A1-201ENST00000342220 NBPF10Q6P3W6 841 aaKnown RBP15.98■□□□□ 0.15
COL18A1-201ENST00000342220 NBPF15Q8N660 670 aa15.98■□□□□ 0.15
COL18A1-201ENST00000342220 RGPD5Q99666 1765 aa15.98■□□□□ 0.15
COL18A1-201ENST00000342220 COL5A2P05997 1499 aaPredicted RBP15.98■□□□□ 0.15
COL18A1-201ENST00000342220 CPDO75976 1380 aa15.98■□□□□ 0.15
COL18A1-201ENST00000342220 TAF7LQ5H9L4 462 aa15.98■□□□□ 0.15
COL18A1-201ENST00000342220 PTF1AQ7RTS3 328 aa15.98■□□□□ 0.15
COL18A1-201ENST00000342220 SYNE4Q8N205 404 aa15.98■□□□□ 0.15
COL18A1-201ENST00000342220 CCDC24Q8N4L8 307 aa15.98■□□□□ 0.15
COL18A1-201ENST00000342220 FAM89AQ96GI7 184 aa15.98■□□□□ 0.15
COL18A1-201ENST00000342220 NEUROD6Q96NK8 337 aa15.98■□□□□ 0.15
COL18A1-201ENST00000342220 STARD3NLO95772 234 aa15.97■□□□□ 0.15
COL18A1-201ENST00000342220 G3BP1Q13283 466 aaKnown RBP eCLIP15.97■□□□□ 0.15
COL18A1-201ENST00000342220 PDIA6Q15084 440 aa15.96■□□□□ 0.15
COL18A1-201ENST00000342220 BABAM1Q9NWV8 329 aa15.96■□□□□ 0.15
COL18A1-201ENST00000342220 ATP8B2P98198 1209 aa15.96■□□□□ 0.15
COL18A1-201ENST00000342220 ATG3Q9NT62 314 aa15.96■□□□□ 0.15
COL18A1-201ENST00000342220 NDUFB9Q9Y6M9 179 aa15.96■□□□□ 0.15
COL18A1-201ENST00000342220 IGKV5-2P06315 115 aa15.96■□□□□ 0.15
COL18A1-201ENST00000342220 LINS1Q8NG48 757 aa15.96■□□□□ 0.15
COL18A1-201ENST00000342220 ZBTB1Q9Y2K1 713 aa15.96■□□□□ 0.15
COL18A1-201ENST00000342220 SLIT3O75094 1523 aa15.96■□□□□ 0.14
COL18A1-201ENST00000342220 SOS1Q07889 1333 aaPredicted RBP15.96■□□□□ 0.14
COL18A1-201ENST00000342220 KIF6Q6ZMV9 814 aa15.95■□□□□ 0.14
COL18A1-201ENST00000342220 PLEKHM2Q8IWE5 1019 aa15.95■□□□□ 0.14
COL18A1-201ENST00000342220 ADCY9O60503 1353 aa15.95■□□□□ 0.14
COL18A1-201ENST00000342220 ERVV-2B6SEH9 535 aa15.95■□□□□ 0.14
COL18A1-201ENST00000342220 PHF14O94880 888 aa15.95■□□□□ 0.14
COL18A1-201ENST00000342220 IFIT2P09913 472 aaKnown RBP15.95■□□□□ 0.14
COL18A1-201ENST00000342220 CERKQ8TCT0 537 aa15.95■□□□□ 0.14
COL18A1-201ENST00000342220 GTF2E1P29083 439 aaPredicted RBP15.95■□□□□ 0.14
COL18A1-201ENST00000342220 LMBR1LQ6UX01 489 aa15.95■□□□□ 0.14
COL18A1-201ENST00000342220 MARCH10Q8NA82 808 aaPredicted RBP15.95■□□□□ 0.14
COL18A1-201ENST00000342220 ZNF594Q96JF6 807 aaPredicted RBP15.95■□□□□ 0.14
COL18A1-201ENST00000342220 EPHA10Q5JZY3 1008 aa15.94■□□□□ 0.14
COL18A1-201ENST00000342220 AACSQ86V21 672 aa15.94■□□□□ 0.14
COL18A1-201ENST00000342220 BCL11BQ9C0K0 894 aaPredicted RBP15.94■□□□□ 0.14
COL18A1-201ENST00000342220 HOXB7P09629 217 aa15.93■□□□□ 0.14
COL18A1-201ENST00000342220 RGS12O14924 1447 aa15.93■□□□□ 0.14
COL18A1-201ENST00000342220 NEURL1BA8MQ27 555 aa15.93■□□□□ 0.14
COL18A1-201ENST00000342220 MCM4P33991 863 aa15.93■□□□□ 0.14
COL18A1-201ENST00000342220 LRRC37A3O60309 1634 aa15.93■□□□□ 0.14
COL18A1-201ENST00000342220 GCKRQ14397 625 aa15.93■□□□□ 0.14
COL18A1-201ENST00000342220 TBC1D9Q6ZT07 1266 aa15.93■□□□□ 0.14
COL18A1-201ENST00000342220 SRCAPQ6ZRS2 3230 aa15.92■□□□□ 0.14
COL18A1-201ENST00000342220 GSPT1P15170 499 aaKnown RBP15.92■□□□□ 0.14
COL18A1-201ENST00000342220 CLASRPQ8N2M8 674 aaKnown RBP15.92■□□□□ 0.14
COL18A1-201ENST00000342220 GZF1Q9H116 711 aaPredicted RBP15.92■□□□□ 0.14
COL18A1-201ENST00000342220 CHMP5Q9NZZ3 219 aa15.92■□□□□ 0.14
COL18A1-201ENST00000342220 SDSP20132 328 aa15.92■□□□□ 0.14
COL18A1-201ENST00000342220 HSCBQ8IWL3 235 aa15.92■□□□□ 0.14
COL18A1-201ENST00000342220 RHPN1Q8TCX5 695 aa15.92■□□□□ 0.14
COL18A1-201ENST00000342220 METTL22Q9BUU2 404 aaPredicted RBP15.92■□□□□ 0.14
COL18A1-201ENST00000342220 MX1P20591 662 aa15.92■□□□□ 0.14
COL18A1-201ENST00000342220 UNC5CLQ8IV45 518 aa15.92■□□□□ 0.14
COL18A1-201ENST00000342220 ANO2Q9NQ90 1003 aa15.92■□□□□ 0.14
COL18A1-201ENST00000342220 EP400Q96L91 3159 aa15.92■□□□□ 0.14
COL18A1-201ENST00000342220 HEG1Q9ULI3 1381 aa15.91■□□□□ 0.14
COL18A1-201ENST00000342220 BOLA2Q9H3K6 86 aa15.91■□□□□ 0.14
COL18A1-201ENST00000342220 HLFQ16534 295 aa15.9■□□□□ 0.14
COL18A1-201ENST00000342220 CASC1Q6TDU7 716 aa15.9■□□□□ 0.14
COL18A1-201ENST00000342220 TAOK2Q9UL54 1235 aa15.9■□□□□ 0.14
COL18A1-201ENST00000342220 PDE1AP54750 535 aa15.9■□□□□ 0.14
COL18A1-201ENST00000342220 DNAJC2Q99543 621 aaKnown RBP15.9■□□□□ 0.14
COL18A1-201ENST00000342220 TRMT112Q9UI30 125 aaKnown RBP15.9■□□□□ 0.14
COL18A1-201ENST00000342220 OVOS2A0A0G2JMS6 1433 aa15.9■□□□□ 0.14
COL18A1-201ENST00000342220 SPATA31A1Q5TZJ5 1347 aa15.9■□□□□ 0.14
COL18A1-201ENST00000342220 LMO7Q8WWI1 1683 aa15.9■□□□□ 0.14
COL18A1-201ENST00000342220 TPRNQ4KMQ1 711 aa15.89■□□□□ 0.13
COL18A1-201ENST00000342220 GORABQ5T7V8 394 aa15.89■□□□□ 0.13
COL18A1-201ENST00000342220 DZIP3Q86Y13 1208 aaKnown RBP15.89■□□□□ 0.13
COL18A1-201ENST00000342220 CWC25Q9NXE8 425 aaPredicted RBP15.89■□□□□ 0.13
COL18A1-201ENST00000342220 L1TD1Q5T7N2 865 aaKnown RBP15.89■□□□□ 0.13
COL18A1-201ENST00000342220 CDC45O75419 566 aa15.88■□□□□ 0.13
COL18A1-201ENST00000342220 CLCN1P35523 988 aa15.88■□□□□ 0.13
COL18A1-201ENST00000342220 SLC4A9Q96Q91 983 aa15.88■□□□□ 0.13
COL18A1-201ENST00000342220 PDIA4P13667 645 aaKnown RBP15.88■□□□□ 0.13
COL18A1-201ENST00000342220 HCLS1P14317 486 aaPredicted RBP15.88■□□□□ 0.13
COL18A1-201ENST00000342220 RBM25P49756 843 aaKnown RBP15.88■□□□□ 0.13
COL18A1-201ENST00000342220 TTC22Q5TAA0 569 aa15.88■□□□□ 0.13
COL18A1-201ENST00000342220 PLBD2Q8NHP8 589 aa15.88■□□□□ 0.13
COL18A1-201ENST00000342220 EDC3Q96F86 508 aaKnown RBP15.88■□□□□ 0.13
COL18A1-201ENST00000342220 ABCC6O95255 1503 aa15.88■□□□□ 0.13
COL18A1-201ENST00000342220 KCNJ4P48050 445 aa15.87■□□□□ 0.13
COL18A1-201ENST00000342220 AFF2P51816 1311 aa15.87■□□□□ 0.13
COL18A1-201ENST00000342220 LOC102724428A0A0B4J2F2 783 aa15.87■□□□□ 0.13
COL18A1-201ENST00000342220 DTNBO60941 627 aa15.87■□□□□ 0.13
COL18A1-201ENST00000342220 SIK1P57059 783 aa15.87■□□□□ 0.13
COL18A1-201ENST00000342220 CWC27Q6UX04 472 aaKnown RBP15.87■□□□□ 0.13
COL18A1-201ENST00000342220 KIF1BPQ96EK5 621 aa15.87■□□□□ 0.13
COL18A1-201ENST00000342220 ALDH1L1O75891 902 aa15.87■□□□□ 0.13
COL18A1-201ENST00000342220 BMP2KLQ5H9B9 411 aa15.87■□□□□ 0.13
COL18A1-201ENST00000342220 HELBQ8NG08 1087 aaPredicted RBP15.87■□□□□ 0.13
COL18A1-201ENST00000342220 QTRT2Q9H974 415 aaKnown RBP15.86■□□□□ 0.13
COL18A1-201ENST00000342220 ROBO1Q9Y6N7 1651 aa15.86■□□□□ 0.13
COL18A1-201ENST00000342220 NCAPD2Q15021 1401 aa15.86■□□□□ 0.13
COL18A1-201ENST00000342220 TRAK2O60296 914 aa15.86■□□□□ 0.13
COL18A1-201ENST00000342220 TLR7Q9NYK1 1049 aaKnown RBP15.86■□□□□ 0.13
COL18A1-201ENST00000342220 TIMM10P62072 90 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms