RNA–Protein interactions for RNA: ENST00000341372.7

TPM3-207, Transcript of tropomyosin 3, humanhuman

TSL 5 BASIC

Gene TPM3, Length 2,007 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-207ENST00000341372 MS4A4AQ96JQ5 239 aa13.58□□□□□ -0.24
TPM3-207ENST00000341372 UBR3Q6ZT12 1888 aa13.58□□□□□ -0.24
TPM3-207ENST00000341372 TJP1Q07157 1748 aa13.58□□□□□ -0.24
TPM3-207ENST00000341372 COL24A1Q17RW2 1714 aa13.58□□□□□ -0.24
TPM3-207ENST00000341372 KCPQ6ZWJ8 1503 aa13.58□□□□□ -0.24
TPM3-207ENST00000341372 FECHP22830 423 aa13.57□□□□□ -0.24
TPM3-207ENST00000341372 PDIA6Q15084 440 aa13.57□□□□□ -0.24
TPM3-207ENST00000341372 GIGYF2Q6Y7W6 1299 aaKnown RBP13.57□□□□□ -0.24
TPM3-207ENST00000341372 IL17REQ8NFR9 667 aa13.57□□□□□ -0.24
TPM3-207ENST00000341372 PNNQ9H307 717 aaKnown RBP13.57□□□□□ -0.24
TPM3-207ENST00000341372 SLC4A9Q96Q91 983 aa13.56□□□□□ -0.24
TPM3-207ENST00000341372 COG6Q9Y2V7 657 aa13.56□□□□□ -0.24
TPM3-207ENST00000341372 HTATSF1O43719 755 aaKnown RBP13.56□□□□□ -0.24
TPM3-207ENST00000341372 OXER1Q8TDS5 423 aa13.56□□□□□ -0.24
TPM3-207ENST00000341372 PNPLA7Q6ZV29 1317 aa13.55□□□□□ -0.24
TPM3-207ENST00000341372 ITPK1Q13572 414 aa13.55□□□□□ -0.24
TPM3-207ENST00000341372 SH3D19Q5HYK7 790 aa13.55□□□□□ -0.24
TPM3-207ENST00000341372 EMILIN3Q9NT22 766 aa13.55□□□□□ -0.24
TPM3-207ENST00000341372 SRCAPQ6ZRS2 3230 aa13.55□□□□□ -0.24
TPM3-207ENST00000341372 DIEXFQ68CQ4 756 aaKnown RBP13.54□□□□□ -0.24
TPM3-207ENST00000341372 LINC00116Q8NCU8 138 aa13.54□□□□□ -0.24
TPM3-207ENST00000341372 REPIN1Q9BWE0 567 aaKnown RBP13.54□□□□□ -0.24
TPM3-207ENST00000341372 PDGFDQ9GZP0 370 aaPredicted RBP13.54□□□□□ -0.24
TPM3-207ENST00000341372 NEFMP07197 916 aa13.54□□□□□ -0.24
TPM3-207ENST00000341372 NFE2L2Q16236 605 aa13.54□□□□□ -0.24
TPM3-207ENST00000341372 ZNF579Q8NAF0 562 aaKnown RBP13.54□□□□□ -0.24
TPM3-207ENST00000341372 MYH14Q7Z406 1995 aaKnown RBP13.53□□□□□ -0.24
TPM3-207ENST00000341372 ATP6V1AP38606 617 aa13.53□□□□□ -0.24
TPM3-207ENST00000341372 MAPK8IP3Q9UPT6 1336 aa13.53□□□□□ -0.24
TPM3-207ENST00000341372 ANP32CO43423 234 aa13.52□□□□□ -0.24
TPM3-207ENST00000341372 TEFQ10587 303 aa13.52□□□□□ -0.24
TPM3-207ENST00000341372 CNTNAP4Q9C0A0 1308 aa13.52□□□□□ -0.24
TPM3-207ENST00000341372 WDR43Q15061 677 aaKnown RBP eCLIP13.52□□□□□ -0.25
TPM3-207ENST00000341372 RTF1Q92541 710 aaKnown RBP13.52□□□□□ -0.25
TPM3-207ENST00000341372 TFCP2L1Q9NZI6 479 aa13.52□□□□□ -0.25
TPM3-207ENST00000341372 SLC16A10Q8TF71 515 aa13.51□□□□□ -0.25
TPM3-207ENST00000341372 RBM42Q9BTD8 480 aaKnown RBP13.51□□□□□ -0.25
TPM3-207ENST00000341372 KDM3BQ7LBC6 1761 aa13.51□□□□□ -0.25
TPM3-207ENST00000341372 GNPATO15228 680 aa13.51□□□□□ -0.25
TPM3-207ENST00000341372 SLC39A6Q13433 755 aa13.51□□□□□ -0.25
TPM3-207ENST00000341372 RC3H1Q5TC82 1133 aaKnown RBP13.51□□□□□ -0.25
TPM3-207ENST00000341372 MCM10Q7L590 875 aa13.51□□□□□ -0.25
TPM3-207ENST00000341372 MTFR1LQ9H019 292 aa13.51□□□□□ -0.25
TPM3-207ENST00000341372 SPON1Q9HCB6 807 aa13.51□□□□□ -0.25
TPM3-207ENST00000341372 ADAMTS8Q9UP79 889 aa13.51□□□□□ -0.25
TPM3-207ENST00000341372 ZNF330Q9Y3S2 320 aaPredicted RBP13.51□□□□□ -0.25
TPM3-207ENST00000341372 PTCD1O75127 700 aaKnown RBP13.5□□□□□ -0.25
TPM3-207ENST00000341372 PPP1R15BQ5SWA1 713 aa13.5□□□□□ -0.25
TPM3-207ENST00000341372 FLAD1Q8NFF5 587 aa13.5□□□□□ -0.25
TPM3-207ENST00000341372 SPDYE16A6NNV3 312 aaPredicted RBP13.49□□□□□ -0.25
TPM3-207ENST00000341372 SSFA2P28290 1259 aa13.49□□□□□ -0.25
TPM3-207ENST00000341372 CCDC184Q52MB2 194 aa13.49□□□□□ -0.25
TPM3-207ENST00000341372 ZNF790Q6PG37 636 aa13.49□□□□□ -0.25
TPM3-207ENST00000341372 AMIGO3Q86WK7 504 aa13.49□□□□□ -0.25
TPM3-207ENST00000341372 RUNDC1Q96C34 613 aa13.49□□□□□ -0.25
TPM3-207ENST00000341372 C4AP0C0L4 1744 aa13.49□□□□□ -0.25
TPM3-207ENST00000341372 TMPOP42166 694 aaKnown RBP13.49□□□□□ -0.25
TPM3-207ENST00000341372 PTGER2P43116 358 aa13.49□□□□□ -0.25
TPM3-207ENST00000341372 DCTN1Q14203 1278 aa13.49□□□□□ -0.25
TPM3-207ENST00000341372 COL23A1Q86Y22 540 aaPredicted RBP13.49□□□□□ -0.25
TPM3-207ENST00000341372 HEG1Q9ULI3 1381 aa13.48□□□□□ -0.25
TPM3-207ENST00000341372 ZBTB7AO95365 584 aa13.48□□□□□ -0.25
TPM3-207ENST00000341372 TTC5Q8N0Z6 440 aa13.47□□□□□ -0.25
TPM3-207ENST00000341372 BTBD11A6QL63 1104 aa13.47□□□□□ -0.25
TPM3-207ENST00000341372 CCDC146Q8IYE0 955 aa13.47□□□□□ -0.25
TPM3-207ENST00000341372 PROCA1Q8NCQ7 364 aaPredicted RBP13.47□□□□□ -0.25
TPM3-207ENST00000341372 ZNF496Q96IT1 587 aaPredicted RBP13.47□□□□□ -0.25
TPM3-207ENST00000341372 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.46□□□□□ -0.25
TPM3-207ENST00000341372 LMOD3Q0VAK6 560 aa13.46□□□□□ -0.25
TPM3-207ENST00000341372 DNAJC10Q8IXB1 793 aa13.46□□□□□ -0.25
TPM3-207ENST00000341372 LAMB4A4D0S4 1761 aa13.46□□□□□ -0.25
TPM3-207ENST00000341372 RPS6KA4O75676 772 aa13.46□□□□□ -0.26
TPM3-207ENST00000341372 CRKLP46109 303 aaKnown RBP13.46□□□□□ -0.26
TPM3-207ENST00000341372 RIPK4P57078 832 aa13.46□□□□□ -0.26
TPM3-207ENST00000341372 TAF7Q15545 349 aaPredicted RBP13.46□□□□□ -0.26
TPM3-207ENST00000341372 PNISRQ8TF01 805 aaKnown RBP13.46□□□□□ -0.26
TPM3-207ENST00000341372 CYP19A1P11511 503 aaPredicted RBP13.45□□□□□ -0.26
TPM3-207ENST00000341372 FMNL2Q96PY5 1086 aa13.45□□□□□ -0.26
TPM3-207ENST00000341372 RTCBQ9Y3I0 505 aaKnown RBP13.45□□□□□ -0.26
TPM3-207ENST00000341372 KCNQ3O43525 872 aa13.44□□□□□ -0.26
TPM3-207ENST00000341372 INTS5Q6P9B9 1019 aaKnown RBP13.44□□□□□ -0.26
TPM3-207ENST00000341372 MRS2Q9HD23 443 aa13.44□□□□□ -0.26
TPM3-207ENST00000341372 THUMPD2Q9BTF0 503 aaKnown RBP13.44□□□□□ -0.26
TPM3-207ENST00000341372 CCDC87Q9NVE4 849 aa13.44□□□□□ -0.26
TPM3-207ENST00000341372 PHF14O94880 888 aa13.43□□□□□ -0.26
TPM3-207ENST00000341372 SKIV2LQ15477 1246 aaKnown RBP13.43□□□□□ -0.26
TPM3-207ENST00000341372 SMIM5Q71RC9 77 aa13.43□□□□□ -0.26
TPM3-207ENST00000341372 IFNL1Q8IU54 200 aa13.43□□□□□ -0.26
TPM3-207ENST00000341372 TEX13AQ9BXU3 409 aaPredicted RBP13.43□□□□□ -0.26
TPM3-207ENST00000341372 TRIM35Q9UPQ4 493 aa13.43□□□□□ -0.26
TPM3-207ENST00000341372 SOS1Q07889 1333 aaPredicted RBP13.43□□□□□ -0.26
TPM3-207ENST00000341372 SPDYE5A6NIY4 337 aa13.42□□□□□ -0.26
TPM3-207ENST00000341372 KCNA1Q09470 495 aa13.42□□□□□ -0.26
TPM3-207ENST00000341372 BABAM1Q9NWV8 329 aa13.42□□□□□ -0.26
TPM3-207ENST00000341372 RRP7AQ9Y3A4 280 aaKnown RBP13.42□□□□□ -0.26
TPM3-207ENST00000341372 GRXCR2A6NFK2 248 aa13.41□□□□□ -0.26
TPM3-207ENST00000341372 HIC1Q14526 733 aa13.41□□□□□ -0.26
TPM3-207ENST00000341372 TRAPPC3LQ5T215 181 aa13.41□□□□□ -0.26
TPM3-207ENST00000341372 SNRKQ9NRH2 765 aa13.41□□□□□ -0.26
TPM3-207ENST00000341372 ZBTB1Q9Y2K1 713 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms