RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 HOXB7P09629 217 aa12.15□□□□□ -0.46
USP54-201ENST00000339859 SPATA31A6Q5VVP1 1343 aa12.15□□□□□ -0.46
USP54-201ENST00000339859 GLRX3O76003 335 aaKnown RBP12.15□□□□□ -0.46
USP54-201ENST00000339859 MAP4K4O95819 1239 aaPredicted RBP12.15□□□□□ -0.46
USP54-201ENST00000339859 ARHGEF25Q86VW2 580 aa12.15□□□□□ -0.46
USP54-201ENST00000339859 SLKQ9H2G2 1235 aaPredicted RBP12.15□□□□□ -0.46
USP54-201ENST00000339859 SETBP1Q9Y6X0 1596 aa12.14□□□□□ -0.47
USP54-201ENST00000339859 AFF2P51816 1311 aa12.14□□□□□ -0.47
USP54-201ENST00000339859 PAXIP1Q6ZW49 1069 aaPredicted RBP12.14□□□□□ -0.47
USP54-201ENST00000339859 SMC3Q9UQE7 1217 aa12.14□□□□□ -0.47
USP54-201ENST00000339859 PHKG2P15735 406 aa12.14□□□□□ -0.47
USP54-201ENST00000339859 NUTM1Q86Y26 1132 aa12.14□□□□□ -0.47
USP54-201ENST00000339859 JDP2Q8WYK2 163 aa12.14□□□□□ -0.47
USP54-201ENST00000339859 MPHOSPH10O00566 681 aaKnown RBP12.14□□□□□ -0.47
USP54-201ENST00000339859 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.14□□□□□ -0.47
USP54-201ENST00000339859 ANXA1P04083 346 aa12.14□□□□□ -0.47
USP54-201ENST00000339859 KIAA2012Q0VF49 1180 aa12.13□□□□□ -0.47
USP54-201ENST00000339859 IRS4O14654 1257 aaPredicted RBP12.13□□□□□ -0.47
USP54-201ENST00000339859 BAG3O95817 575 aa12.13□□□□□ -0.47
USP54-201ENST00000339859 EXOC6BQ9Y2D4 811 aa12.13□□□□□ -0.47
USP54-201ENST00000339859 GRM8O00222 908 aa12.13□□□□□ -0.47
USP54-201ENST00000339859 DRC7Q8IY82 874 aa12.13□□□□□ -0.47
USP54-201ENST00000339859 PHACTR3Q96KR7 559 aa12.13□□□□□ -0.47
USP54-201ENST00000339859 MX1P20591 662 aa12.13□□□□□ -0.47
USP54-201ENST00000339859 L1TD1Q5T7N2 865 aaKnown RBP12.13□□□□□ -0.47
USP54-201ENST00000339859 PLBD2Q8NHP8 589 aa12.13□□□□□ -0.47
USP54-201ENST00000339859 IMMTQ16891 758 aaKnown RBP12.12□□□□□ -0.47
USP54-201ENST00000339859 ANKRD1Q15327 319 aa12.12□□□□□ -0.47
USP54-201ENST00000339859 UBAC1Q9BSL1 405 aa12.12□□□□□ -0.47
USP54-201ENST00000339859 DDX21Q9NR30 783 aaKnown RBP eCLIP12.12□□□□□ -0.47
USP54-201ENST00000339859 PRR36Q9H6K5 1346 aa12.12□□□□□ -0.47
USP54-201ENST00000339859 H0YIN7 160 aa12.12□□□□□ -0.47
USP54-201ENST00000339859 LMOD1P29536 600 aaPredicted RBP12.12□□□□□ -0.47
USP54-201ENST00000339859 SLC4A3P48751 1232 aa12.12□□□□□ -0.47
USP54-201ENST00000339859 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.12□□□□□ -0.47
USP54-201ENST00000339859 MRPL50Q8N5N7 158 aaKnown RBP12.12□□□□□ -0.47
USP54-201ENST00000339859 TRPM1Q7Z4N2 1603 aa12.12□□□□□ -0.47
USP54-201ENST00000339859 PER1O15534 1290 aaPredicted RBP12.12□□□□□ -0.47
USP54-201ENST00000339859 HOOK1Q9UJC3 728 aaKnown RBP12.12□□□□□ -0.47
USP54-201ENST00000339859 TRIM27P14373 513 aa12.11□□□□□ -0.47
USP54-201ENST00000339859 SEPT12Q8IYM1 358 aa12.11□□□□□ -0.47
USP54-201ENST00000339859 C8orf58Q8NAV2 365 aa12.11□□□□□ -0.47
USP54-201ENST00000339859 C22orf23Q9BZE7 217 aa12.11□□□□□ -0.47
USP54-201ENST00000339859 QRICH2Q9H0J4 1663 aa12.11□□□□□ -0.47
USP54-201ENST00000339859 BLMP54132 1417 aaPredicted RBP12.11□□□□□ -0.47
USP54-201ENST00000339859 PIP4K2AP48426 406 aaPredicted RBP12.11□□□□□ -0.47
USP54-201ENST00000339859 SUPT20HQ8NEM7 779 aa12.11□□□□□ -0.47
USP54-201ENST00000339859 LINS1Q8NG48 757 aa12.11□□□□□ -0.47
USP54-201ENST00000339859 KRT32Q14532 448 aa12.11□□□□□ -0.47
USP54-201ENST00000339859 DLC1Q96QB1 1528 aa12.11□□□□□ -0.47
USP54-201ENST00000339859 STK11IPQ8N1F8 1099 aa12.1□□□□□ -0.47
USP54-201ENST00000339859 TPM2P07951 284 aa12.1□□□□□ -0.47
USP54-201ENST00000339859 RBM6P78332 1123 aaKnown RBP12.1□□□□□ -0.47
USP54-201ENST00000339859 OGFOD1Q8N543 542 aa12.1□□□□□ -0.47
USP54-201ENST00000339859 SPATA31D1Q6ZQQ2 1576 aa12.1□□□□□ -0.47
USP54-201ENST00000339859 HLA-DOAP06340 250 aa12.1□□□□□ -0.47
USP54-201ENST00000339859 CLEC11AQ9Y240 323 aa12.1□□□□□ -0.47
USP54-201ENST00000339859 FRMPD1Q5SYB0 1578 aa12.1□□□□□ -0.47
USP54-201ENST00000339859 MCM2P49736 904 aa12.1□□□□□ -0.47
USP54-201ENST00000339859 FOXD4L5Q5VV16 416 aaPredicted RBP12.1□□□□□ -0.47
USP54-201ENST00000339859 FOXD4L4Q8WXT5 416 aaPredicted RBP12.1□□□□□ -0.47
USP54-201ENST00000339859 SOGA3Q5TF21 947 aa12.09□□□□□ -0.47
USP54-201ENST00000339859 MKNK2Q9HBH9 465 aa12.09□□□□□ -0.47
USP54-201ENST00000339859 CYP46A1Q9Y6A2 500 aa12.09□□□□□ -0.47
USP54-201ENST00000339859 TRIM37O94972 964 aa12.09□□□□□ -0.47
USP54-201ENST00000339859 LGR6Q9HBX8 967 aa12.09□□□□□ -0.47
USP54-201ENST00000339859 PDE6BP35913 854 aa12.09□□□□□ -0.47
USP54-201ENST00000339859 IL15P40933 162 aaPredicted RBP12.09□□□□□ -0.47
USP54-201ENST00000339859 TRIM22Q8IYM9 498 aa12.09□□□□□ -0.47
USP54-201ENST00000339859 NCOA3Q9Y6Q9 1424 aa12.09□□□□□ -0.47
USP54-201ENST00000339859 NF2P35240 595 aa12.09□□□□□ -0.47
USP54-201ENST00000339859 TPD52L1Q16890 204 aaPredicted RBP12.09□□□□□ -0.47
USP54-201ENST00000339859 ZC3H12CQ9C0D7 883 aaKnown RBP12.09□□□□□ -0.47
USP54-201ENST00000339859 CCDC8Q9H0W5 538 aaPredicted RBP12.09□□□□□ -0.47
USP54-201ENST00000339859 C1orf167Q5SNV9 1468 aa12.09□□□□□ -0.47
USP54-201ENST00000339859 BOLA2Q9H3K6 86 aa12.08□□□□□ -0.47
USP54-201ENST00000339859 CWC27Q6UX04 472 aaKnown RBP12.08□□□□□ -0.48
USP54-201ENST00000339859 NAPBQ9H115 298 aa12.08□□□□□ -0.48
USP54-201ENST00000339859 JARID2Q92833 1246 aaPredicted RBP12.08□□□□□ -0.48
USP54-201ENST00000339859 CDKL5O76039 1030 aa12.08□□□□□ -0.48
USP54-201ENST00000339859 NEXMIFQ5QGS0 1516 aa12.08□□□□□ -0.48
USP54-201ENST00000339859 ALDH1B1P30837 517 aa12.07□□□□□ -0.48
USP54-201ENST00000339859 ZNF444Q8N0Y2 327 aaPredicted RBP12.07□□□□□ -0.48
USP54-201ENST00000339859 RICTORQ6R327 1708 aa12.07□□□□□ -0.48
USP54-201ENST00000339859 RNF41Q9H4P4 317 aaPredicted RBP12.07□□□□□ -0.48
USP54-201ENST00000339859 ATP2B3Q16720 1220 aa12.07□□□□□ -0.48
USP54-201ENST00000339859 LMBR1LQ6UX01 489 aa12.07□□□□□ -0.48
USP54-201ENST00000339859 DNAJC10Q8IXB1 793 aa12.07□□□□□ -0.48
USP54-201ENST00000339859 CCDC191Q8NCU4 936 aa12.07□□□□□ -0.48
USP54-201ENST00000339859 METTL22Q9BUU2 404 aaPredicted RBP12.07□□□□□ -0.48
USP54-201ENST00000339859 HSPA1LP34931 641 aa12.07□□□□□ -0.48
USP54-201ENST00000339859 RBM19Q9Y4C8 960 aaKnown RBP12.07□□□□□ -0.48
USP54-201ENST00000339859 NUP133Q8WUM0 1156 aa12.07□□□□□ -0.48
USP54-201ENST00000339859 EVI5LQ96CN4 794 aa12.07□□□□□ -0.48
USP54-201ENST00000339859 CABP5Q9NP86 173 aa12.07□□□□□ -0.48
USP54-201ENST00000339859 U3KPZ7 1027 aaPredicted RBP12.07□□□□□ -0.48
USP54-201ENST00000339859 SH3TC1Q8TE82 1336 aa12.06□□□□□ -0.48
USP54-201ENST00000339859 IPO9Q96P70 1041 aaKnown RBP12.06□□□□□ -0.48
USP54-201ENST00000339859 REREQ9P2R6 1566 aa12.06□□□□□ -0.48
USP54-201ENST00000339859 DDX11L8A8MPP1 907 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms