RNA–Protein interactions for RNA: ENST00000334504.11

COL4A6-201, Transcript of collagen type IV alpha 6 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A6, Length 6,700 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-201ENST00000334504 SELENOSQ9BQE4 189 aa11.28□□□□□ -0.6
COL4A6-201ENST00000334504 MYO1BO43795 1136 aa11.28□□□□□ -0.6
COL4A6-201ENST00000334504 PHAXQ9H814 394 aaKnown RBP11.28□□□□□ -0.6
COL4A6-201ENST00000334504 ECM2O94769 699 aaPredicted RBP11.28□□□□□ -0.6
COL4A6-201ENST00000334504 PLEKHO1Q53GL0 409 aaPredicted RBP11.28□□□□□ -0.6
COL4A6-201ENST00000334504 GTF3C6Q969F1 213 aa11.28□□□□□ -0.6
COL4A6-201ENST00000334504 U3KPZ7 1027 aaPredicted RBP11.27□□□□□ -0.6
COL4A6-201ENST00000334504 MYL6BP14649 208 aa11.27□□□□□ -0.61
COL4A6-201ENST00000334504 FERP16591 822 aa11.27□□□□□ -0.61
COL4A6-201ENST00000334504 UBASH3AP57075 661 aa11.27□□□□□ -0.61
COL4A6-201ENST00000334504 TTLL12Q14166 644 aaPredicted RBP11.27□□□□□ -0.61
COL4A6-201ENST00000334504 CCDC129Q6ZRS4 1044 aa11.27□□□□□ -0.61
COL4A6-201ENST00000334504 PHACTR2O75167 634 aa11.27□□□□□ -0.61
COL4A6-201ENST00000334504 ZNF219Q9P2Y4 722 aaPredicted RBP11.27□□□□□ -0.61
COL4A6-201ENST00000334504 ZEB2O60315 1214 aa11.27□□□□□ -0.61
COL4A6-201ENST00000334504 DNAJC21Q5F1R6 531 aaKnown RBP11.27□□□□□ -0.61
COL4A6-201ENST00000334504 BICDL1Q6ZP65 573 aa11.27□□□□□ -0.61
COL4A6-201ENST00000334504 APBB1IPQ7Z5R6 666 aaPredicted RBP11.27□□□□□ -0.61
COL4A6-201ENST00000334504 CCT2P78371 535 aaKnown RBP11.26□□□□□ -0.61
COL4A6-201ENST00000334504 DDX46Q7L014 1031 aaKnown RBP11.26□□□□□ -0.61
COL4A6-201ENST00000334504 NLRP6P59044 892 aa11.26□□□□□ -0.61
COL4A6-201ENST00000334504 KIAA0753Q2KHM9 967 aa11.26□□□□□ -0.61
COL4A6-201ENST00000334504 SULT6B1Q6IMI4 303 aa11.26□□□□□ -0.61
COL4A6-201ENST00000334504 AIDAQ96BJ3 306 aa11.26□□□□□ -0.61
COL4A6-201ENST00000334504 FEZ1Q99689 392 aa11.26□□□□□ -0.61
COL4A6-201ENST00000334504 ESCO1Q5FWF5 840 aa11.25□□□□□ -0.61
COL4A6-201ENST00000334504 IDH1O75874 414 aaKnown RBP11.25□□□□□ -0.61
COL4A6-201ENST00000334504 KIF20AO95235 890 aa11.25□□□□□ -0.61
COL4A6-201ENST00000334504 ARID4AP29374 1257 aaPredicted RBP11.25□□□□□ -0.61
COL4A6-201ENST00000334504 SSRP1Q08945 709 aaKnown RBP11.25□□□□□ -0.61
COL4A6-201ENST00000334504 CCDC40Q4G0X9 1142 aa11.25□□□□□ -0.61
COL4A6-201ENST00000334504 TBC1D32Q96NH3 1257 aa11.25□□□□□ -0.61
COL4A6-201ENST00000334504 IKBKGQ9Y6K9 419 aa11.25□□□□□ -0.61
COL4A6-201ENST00000334504 A0A1B0GUA9 196 aa11.25□□□□□ -0.61
COL4A6-201ENST00000334504 NOL3O60936 208 aaKnown RBP11.25□□□□□ -0.61
COL4A6-201ENST00000334504 GLRX3O76003 335 aaKnown RBP11.25□□□□□ -0.61
COL4A6-201ENST00000334504 SPTY2D1Q68D10 685 aaPredicted RBP11.25□□□□□ -0.61
COL4A6-201ENST00000334504 CAVIN2O95810 425 aa11.25□□□□□ -0.61
COL4A6-201ENST00000334504 CA8P35219 290 aa11.25□□□□□ -0.61
COL4A6-201ENST00000334504 CLNS1AP54105 237 aaKnown RBP11.25□□□□□ -0.61
COL4A6-201ENST00000334504 KIF1BPQ96EK5 621 aa11.25□□□□□ -0.61
COL4A6-201ENST00000334504 FGD6Q6ZV73 1430 aa11.25□□□□□ -0.61
COL4A6-201ENST00000334504 CTAGE9A4FU28 777 aa11.24□□□□□ -0.61
COL4A6-201ENST00000334504 TBC1D9Q6ZT07 1266 aa11.24□□□□□ -0.61
COL4A6-201ENST00000334504 CNPY2Q9Y2B0 182 aa11.24□□□□□ -0.61
COL4A6-201ENST00000334504 CPLX4Q7Z7G2 160 aa11.24□□□□□ -0.61
COL4A6-201ENST00000334504 FAM114A1Q8IWE2 563 aa11.24□□□□□ -0.61
COL4A6-201ENST00000334504 CCDC82Q8N4S0 544 aa11.24□□□□□ -0.61
COL4A6-201ENST00000334504 MIPOL1Q8TD10 442 aa11.24□□□□□ -0.61
COL4A6-201ENST00000334504 BOLA2Q9H3K6 86 aa11.24□□□□□ -0.61
COL4A6-201ENST00000334504 PUF60Q9UHX1 559 aaKnown RBP11.24□□□□□ -0.61
COL4A6-201ENST00000334504 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.24□□□□□ -0.61
COL4A6-201ENST00000334504 MPHOSPH10O00566 681 aaKnown RBP11.24□□□□□ -0.61
COL4A6-201ENST00000334504 N4BP3O15049 544 aa11.24□□□□□ -0.61
COL4A6-201ENST00000334504 USP48Q86UV5 1035 aa11.24□□□□□ -0.61
COL4A6-201ENST00000334504 TMEM87AQ8NBN3 555 aa11.24□□□□□ -0.61
COL4A6-201ENST00000334504 HMGB1P09429 215 aaKnown RBP11.24□□□□□ -0.61
COL4A6-201ENST00000334504 RHOXF2BP0C7M4 288 aa11.24□□□□□ -0.61
COL4A6-201ENST00000334504 U2AF2P26368 475 aaKnown RBP eCLIP11.24□□□□□ -0.61
COL4A6-201ENST00000334504 IFI16Q16666 785 aaKnown RBP11.24□□□□□ -0.61
COL4A6-201ENST00000334504 FAM76AQ8TAV0 307 aa11.24□□□□□ -0.61
COL4A6-201ENST00000334504 SMC6Q96SB8 1091 aa11.24□□□□□ -0.61
COL4A6-201ENST00000334504 RHOXF2Q9BQY4 288 aa11.24□□□□□ -0.61
COL4A6-201ENST00000334504 CEP126Q9P2H0 1117 aa11.24□□□□□ -0.61
COL4A6-201ENST00000334504 SEC63Q9UGP8 760 aaKnown RBP11.24□□□□□ -0.61
COL4A6-201ENST00000334504 CAPZA3Q96KX2 299 aa11.23□□□□□ -0.61
COL4A6-201ENST00000334504 TSNARE1Q96NA8 513 aa11.23□□□□□ -0.61
COL4A6-201ENST00000334504 MYOM3Q5VTT5 1437 aa11.23□□□□□ -0.61
COL4A6-201ENST00000334504 ANKRD30BQ9BXX2 1392 aa11.23□□□□□ -0.61
COL4A6-201ENST00000334504 GOLGA8BA8MQT2 603 aa11.23□□□□□ -0.61
COL4A6-201ENST00000334504 POLR3DP05423 398 aaPredicted RBP11.23□□□□□ -0.61
COL4A6-201ENST00000334504 SYT1P21579 422 aa11.23□□□□□ -0.61
COL4A6-201ENST00000334504 PRIM1P49642 420 aaKnown RBP11.23□□□□□ -0.61
COL4A6-201ENST00000334504 HSP90AA4PQ58FG1 418 aa11.23□□□□□ -0.61
COL4A6-201ENST00000334504 LRP2BPQ9P2M1 347 aa11.23□□□□□ -0.61
COL4A6-201ENST00000334504 RUSC2Q8N2Y8 1516 aa11.23□□□□□ -0.61
COL4A6-201ENST00000334504 ZBTB16Q05516 673 aa11.23□□□□□ -0.61
COL4A6-201ENST00000334504 STAC3Q96MF2 364 aa11.23□□□□□ -0.61
COL4A6-201ENST00000334504 STMN4Q9H169 189 aaPredicted RBP11.23□□□□□ -0.61
COL4A6-201ENST00000334504 FANCD2Q9BXW9 1451 aa11.23□□□□□ -0.61
COL4A6-201ENST00000334504 SYT10Q6XYQ8 523 aa11.23□□□□□ -0.61
COL4A6-201ENST00000334504 AOPEPQ8N6M6 819 aa11.23□□□□□ -0.61
COL4A6-201ENST00000334504 FAM200AQ8TCP9 573 aa11.23□□□□□ -0.61
COL4A6-201ENST00000334504 MPHOSPH8Q99549 860 aa11.23□□□□□ -0.61
COL4A6-201ENST00000334504 ZFYP08048 801 aaPredicted RBP11.23□□□□□ -0.61
COL4A6-201ENST00000334504 ZSCAN22P10073 491 aaPredicted RBP11.23□□□□□ -0.61
COL4A6-201ENST00000334504 PTGS1P23219 599 aa11.23□□□□□ -0.61
COL4A6-201ENST00000334504 ZSCAN29Q8IWY8 852 aaPredicted RBP11.23□□□□□ -0.61
COL4A6-201ENST00000334504 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.23□□□□□ -0.61
COL4A6-201ENST00000334504 AKR1B10O60218 316 aa11.22□□□□□ -0.61
COL4A6-201ENST00000334504 SLC12A7Q9Y666 1083 aa11.22□□□□□ -0.61
COL4A6-201ENST00000334504 GOLGA8AA7E2F4 631 aa11.22□□□□□ -0.61
COL4A6-201ENST00000334504 CYLC1P35663 651 aaPredicted RBP11.22□□□□□ -0.61
COL4A6-201ENST00000334504 TCERG1LQ5VWI1 586 aa11.22□□□□□ -0.61
COL4A6-201ENST00000334504 DNAJC25Q9H1X3 360 aa11.22□□□□□ -0.61
COL4A6-201ENST00000334504 RASAL2Q9UJF2 1139 aa11.22□□□□□ -0.61
COL4A6-201ENST00000334504 PRC1O43663 620 aa11.22□□□□□ -0.61
COL4A6-201ENST00000334504 LACTBP83111 547 aaPredicted RBP11.22□□□□□ -0.61
COL4A6-201ENST00000334504 CCDC102BQ68D86 513 aa11.22□□□□□ -0.61
COL4A6-201ENST00000334504 IQCGQ9H095 443 aaKnown RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms