RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 KIF6Q6ZMV9 814 aa12.61□□□□□ -0.39
HMGB3-201ENST00000325307 MEIS3Q99687 375 aa12.61□□□□□ -0.39
HMGB3-201ENST00000325307 BTAF1O14981 1849 aa12.6□□□□□ -0.39
HMGB3-201ENST00000325307 PLBD2Q8NHP8 589 aa12.6□□□□□ -0.39
HMGB3-201ENST00000325307 MYD88Q99836 296 aa12.6□□□□□ -0.39
HMGB3-201ENST00000325307 PCDHB15Q9Y5E8 787 aa12.6□□□□□ -0.39
HMGB3-201ENST00000325307 BEND3Q5T5X7 828 aa12.6□□□□□ -0.39
HMGB3-201ENST00000325307 CWF19L2Q2TBE0 894 aaKnown RBP12.59□□□□□ -0.39
HMGB3-201ENST00000325307 LINC00116Q8NCU8 138 aa12.59□□□□□ -0.39
HMGB3-201ENST00000325307 PXDNLA1KZ92 1463 aa12.59□□□□□ -0.39
HMGB3-201ENST00000325307 EP400Q96L91 3159 aa12.59□□□□□ -0.39
HMGB3-201ENST00000325307 METTL22Q9BUU2 404 aaPredicted RBP12.59□□□□□ -0.39
HMGB3-201ENST00000325307 GNAI3P08754 354 aa12.58□□□□□ -0.4
HMGB3-201ENST00000325307 IL6STP40189 918 aaPredicted RBP12.58□□□□□ -0.4
HMGB3-201ENST00000325307 INTS5Q6P9B9 1019 aaKnown RBP12.58□□□□□ -0.4
HMGB3-201ENST00000325307 LINS1Q8NG48 757 aa12.58□□□□□ -0.4
HMGB3-201ENST00000325307 C9orf78Q9NZ63 289 aaPredicted RBP12.58□□□□□ -0.4
HMGB3-201ENST00000325307 SBF2Q86WG5 1849 aa12.58□□□□□ -0.4
HMGB3-201ENST00000325307 ATP5J2-PTCD1G3V325 749 aa12.58□□□□□ -0.4
HMGB3-201ENST00000325307 UBTFL1P0CB47 393 aaPredicted RBP12.58□□□□□ -0.4
HMGB3-201ENST00000325307 TBC1D2BQ9UPU7 963 aa12.58□□□□□ -0.4
HMGB3-201ENST00000325307 TJP1Q07157 1748 aa12.57□□□□□ -0.4
HMGB3-201ENST00000325307 APBA3O96018 575 aa12.57□□□□□ -0.4
HMGB3-201ENST00000325307 DZIP3Q86Y13 1208 aaKnown RBP12.57□□□□□ -0.4
HMGB3-201ENST00000325307 RWDD1Q9H446 243 aaPredicted RBP12.57□□□□□ -0.4
HMGB3-201ENST00000325307 ALDH1L1O75891 902 aa12.57□□□□□ -0.4
HMGB3-201ENST00000325307 KLHL34Q8N239 644 aa12.56□□□□□ -0.4
HMGB3-201ENST00000325307 USP44Q9H0E7 712 aa12.56□□□□□ -0.4
HMGB3-201ENST00000325307 GNAI2P04899 355 aa12.56□□□□□ -0.4
HMGB3-201ENST00000325307 ATP10DQ9P241 1426 aa12.56□□□□□ -0.4
HMGB3-201ENST00000325307 IGHDP01880 384 aa12.56□□□□□ -0.4
HMGB3-201ENST00000325307 GNPATO15228 680 aa12.55□□□□□ -0.4
HMGB3-201ENST00000325307 IGKV5-2P06315 115 aa12.55□□□□□ -0.4
HMGB3-201ENST00000325307 EIF5P55010 431 aaKnown RBP12.55□□□□□ -0.4
HMGB3-201ENST00000325307 CENPQQ7L2Z9 268 aaPredicted RBP12.55□□□□□ -0.4
HMGB3-201ENST00000325307 MAP3K15Q6ZN16 1313 aa12.55□□□□□ -0.4
HMGB3-201ENST00000325307 KDM2BQ8NHM5 1336 aa12.55□□□□□ -0.4
HMGB3-201ENST00000325307 NEURL1BA8MQ27 555 aa12.55□□□□□ -0.4
HMGB3-201ENST00000325307 NBPF7P0C2Y1 421 aaPredicted RBP12.55□□□□□ -0.4
HMGB3-201ENST00000325307 AK7Q96M32 723 aa12.55□□□□□ -0.4
HMGB3-201ENST00000325307 LRRFIP2Q9Y608 721 aaKnown RBP12.55□□□□□ -0.4
HMGB3-201ENST00000325307 CNTNAP4Q9C0A0 1308 aa12.54□□□□□ -0.4
HMGB3-201ENST00000325307 GRM8O00222 908 aa12.54□□□□□ -0.4
HMGB3-201ENST00000325307 LRRC4BQ9NT99 713 aa12.54□□□□□ -0.4
HMGB3-201ENST00000325307 GCKRQ14397 625 aa12.54□□□□□ -0.4
HMGB3-201ENST00000325307 SLC27A3Q5K4L6 730 aa12.54□□□□□ -0.4
HMGB3-201ENST00000325307 SKAP1Q86WV1 359 aa12.54□□□□□ -0.4
HMGB3-201ENST00000325307 HLFQ16534 295 aa12.53□□□□□ -0.4
HMGB3-201ENST00000325307 RTCBQ9Y3I0 505 aaKnown RBP12.53□□□□□ -0.4
HMGB3-201ENST00000325307 COL15A1P39059 1388 aa12.53□□□□□ -0.4
HMGB3-201ENST00000325307 GPTP24298 496 aa12.53□□□□□ -0.4
HMGB3-201ENST00000325307 TCIRG1Q13488 830 aa12.53□□□□□ -0.4
HMGB3-201ENST00000325307 TXNRD1Q16881 649 aa12.53□□□□□ -0.4
HMGB3-201ENST00000325307 RC3H1Q5TC82 1133 aaKnown RBP12.53□□□□□ -0.4
HMGB3-201ENST00000325307 SMIM5Q71RC9 77 aa12.53□□□□□ -0.4
HMGB3-201ENST00000325307 JARID2Q92833 1246 aaPredicted RBP12.53□□□□□ -0.4
HMGB3-201ENST00000325307 CWC25Q9NXE8 425 aaPredicted RBP12.53□□□□□ -0.4
HMGB3-201ENST00000325307 A0A087WZG4 1122 aa12.53□□□□□ -0.4
HMGB3-201ENST00000325307 PHF14O94880 888 aa12.53□□□□□ -0.4
HMGB3-201ENST00000325307 RTL5Q5HYW3 569 aaPredicted RBP12.53□□□□□ -0.4
HMGB3-201ENST00000325307 GIGYF2Q6Y7W6 1299 aaKnown RBP12.53□□□□□ -0.4
HMGB3-201ENST00000325307 HDAC5Q9UQL6 1122 aa12.53□□□□□ -0.4
HMGB3-201ENST00000325307 CEP85Q6P2H3 762 aa12.52□□□□□ -0.4
HMGB3-201ENST00000325307 RPAP2Q8IXW5 612 aaPredicted RBP12.52□□□□□ -0.4
HMGB3-201ENST00000325307 RPS6KA4O75676 772 aa12.52□□□□□ -0.41
HMGB3-201ENST00000325307 HDAC1Q13547 482 aaPredicted RBP12.52□□□□□ -0.41
HMGB3-201ENST00000325307 HSP90AB3PQ58FF7 597 aa12.52□□□□□ -0.41
HMGB3-201ENST00000325307 UBE3BQ7Z3V4 1068 aa12.52□□□□□ -0.41
HMGB3-201ENST00000325307 ERVV-1B6SEH8 477 aa12.51□□□□□ -0.41
HMGB3-201ENST00000325307 ANKRD44Q8N8A2 993 aa12.51□□□□□ -0.41
HMGB3-201ENST00000325307 ARFGEF2Q9Y6D5 1785 aa12.51□□□□□ -0.41
HMGB3-201ENST00000325307 MYH14Q7Z406 1995 aaKnown RBP12.51□□□□□ -0.41
HMGB3-201ENST00000325307 HMMRO75330 724 aa12.51□□□□□ -0.41
HMGB3-201ENST00000325307 SF3B2Q13435 895 aaKnown RBP12.51□□□□□ -0.41
HMGB3-201ENST00000325307 PLSCR1O15162 318 aa12.51□□□□□ -0.41
HMGB3-201ENST00000325307 CCDC191Q8NCU4 936 aa12.51□□□□□ -0.41
HMGB3-201ENST00000325307 SIRT2Q8IXJ6 389 aa12.5□□□□□ -0.41
HMGB3-201ENST00000325307 ZNF831Q5JPB2 1677 aa12.5□□□□□ -0.41
HMGB3-201ENST00000325307 ZNF652Q9Y2D9 606 aa12.5□□□□□ -0.41
HMGB3-201ENST00000325307 LY75O60449 1722 aa12.5□□□□□ -0.41
HMGB3-201ENST00000325307 COL5A3P25940 1745 aaPredicted RBP12.5□□□□□ -0.41
HMGB3-201ENST00000325307 CICQ96RK0 1608 aaPredicted RBP12.5□□□□□ -0.41
HMGB3-201ENST00000325307 ZPR1O75312 459 aa12.5□□□□□ -0.41
HMGB3-201ENST00000325307 CAMTA2O94983 1202 aa12.5□□□□□ -0.41
HMGB3-201ENST00000325307 PROM2Q8N271 834 aa12.49□□□□□ -0.41
HMGB3-201ENST00000325307 ISCA1Q9BUE6 129 aa12.49□□□□□ -0.41
HMGB3-201ENST00000325307 FAM177BA6PVY3 158 aa12.49□□□□□ -0.41
HMGB3-201ENST00000325307 HMGB2P26583 209 aaKnown RBP12.49□□□□□ -0.41
HMGB3-201ENST00000325307 RFC4P35249 363 aa12.49□□□□□ -0.41
HMGB3-201ENST00000325307 TRAPPC3LQ5T215 181 aa12.49□□□□□ -0.41
HMGB3-201ENST00000325307 SUCLG2Q96I99 432 aa12.49□□□□□ -0.41
HMGB3-201ENST00000325307 N4BP2Q86UW6 1770 aaPredicted RBP12.49□□□□□ -0.41
HMGB3-201ENST00000325307 SRGAP3O43295 1099 aa12.48□□□□□ -0.41
HMGB3-201ENST00000325307 NUP188Q5SRE5 1749 aa12.48□□□□□ -0.41
HMGB3-201ENST00000325307 APBB1O00213 710 aa12.48□□□□□ -0.41
HMGB3-201ENST00000325307 ATP8B2P98198 1209 aa12.48□□□□□ -0.41
HMGB3-201ENST00000325307 PPP1R42Q7Z4L9 355 aa12.48□□□□□ -0.41
HMGB3-201ENST00000325307 ARHGEF1Q92888 912 aaKnown RBP12.48□□□□□ -0.41
HMGB3-201ENST00000325307 SRP68Q9UHB9 627 aaKnown RBP12.48□□□□□ -0.41
HMGB3-201ENST00000325307 NIP7Q9Y221 180 aaKnown RBP eCLIP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 1470.8 ms