RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 ANKRD18BA2A2Z9 1011 aa10.03□□□□□ -0.8
USF3-201ENST00000316407 CUX1P39880 1505 aa10.03□□□□□ -0.8
USF3-201ENST00000316407 PSME1Q06323 249 aa10.03□□□□□ -0.8
USF3-201ENST00000316407 BANK1Q8NDB2 785 aa10.03□□□□□ -0.8
USF3-201ENST00000316407 CCDC85AQ96PX6 553 aaPredicted RBP10.03□□□□□ -0.8
USF3-201ENST00000316407 CEP131Q9UPN4 1083 aa10.03□□□□□ -0.8
USF3-201ENST00000316407 MMRN2Q9H8L6 949 aa10.03□□□□□ -0.8
USF3-201ENST00000316407 SPG7Q9UQ90 795 aa10.03□□□□□ -0.8
USF3-201ENST00000316407 VGFO15240 615 aaPredicted RBP10.03□□□□□ -0.8
USF3-201ENST00000316407 PCK1P35558 622 aa10.03□□□□□ -0.8
USF3-201ENST00000316407 AOPEPQ8N6M6 819 aa10.03□□□□□ -0.8
USF3-201ENST00000316407 LZTFL1Q9NQ48 299 aa10.03□□□□□ -0.8
USF3-201ENST00000316407 RRAGDQ9NQL2 400 aaPredicted RBP10.03□□□□□ -0.8
USF3-201ENST00000316407 RUSC2Q8N2Y8 1516 aa10.03□□□□□ -0.8
USF3-201ENST00000316407 TSG101Q99816 390 aa10.03□□□□□ -0.8
USF3-201ENST00000316407 MX1P20591 662 aa10.03□□□□□ -0.8
USF3-201ENST00000316407 UBASH3AP57075 661 aa10.02□□□□□ -0.8
USF3-201ENST00000316407 KIF6Q6ZMV9 814 aa10.02□□□□□ -0.8
USF3-201ENST00000316407 TRHP20396 242 aaPredicted RBP10.02□□□□□ -0.8
USF3-201ENST00000316407 TPX2Q9ULW0 747 aaKnown RBP10.02□□□□□ -0.8
USF3-201ENST00000316407 POTEJP0CG39 1038 aa10.02□□□□□ -0.8
USF3-201ENST00000316407 CCT4P50991 539 aaKnown RBP10.02□□□□□ -0.8
USF3-201ENST00000316407 DESP17661 470 aa10.02□□□□□ -0.81
USF3-201ENST00000316407 ARID5AQ03989 594 aa10.02□□□□□ -0.81
USF3-201ENST00000316407 TCERG1LQ5VWI1 586 aa10.02□□□□□ -0.81
USF3-201ENST00000316407 MIS18AQ9NYP9 233 aa10.02□□□□□ -0.81
USF3-201ENST00000316407 LRCH2Q5VUJ6 765 aa10.02□□□□□ -0.81
USF3-201ENST00000316407 CCDC155Q8N6L0 562 aa10.02□□□□□ -0.81
USF3-201ENST00000316407 ZFYP08048 801 aaPredicted RBP10.02□□□□□ -0.81
USF3-201ENST00000316407 ARL1P40616 181 aaPredicted RBP10.02□□□□□ -0.81
USF3-201ENST00000316407 PEX19P40855 299 aa10.02□□□□□ -0.81
USF3-201ENST00000316407 A0A1B0GUA9 196 aa10.02□□□□□ -0.81
USF3-201ENST00000316407 TMEM132EQ6IEE7 984 aa10.02□□□□□ -0.81
USF3-201ENST00000316407 SETD1BQ9UPS6 1966 aaKnown RBP10.02□□□□□ -0.81
USF3-201ENST00000316407 RPUSD2Q8IZ73 545 aaKnown RBP10.02□□□□□ -0.81
USF3-201ENST00000316407 CTAGE15A4D2H0 777 aa10.02□□□□□ -0.81
USF3-201ENST00000316407 CTAGE8P0CG41 777 aa10.02□□□□□ -0.81
USF3-201ENST00000316407 KIAA0753Q2KHM9 967 aa10.02□□□□□ -0.81
USF3-201ENST00000316407 CTAGE6Q86UF2 777 aa10.02□□□□□ -0.81
USF3-201ENST00000316407 CTAGE4Q8IX94 777 aa10.02□□□□□ -0.81
USF3-201ENST00000316407 IQCGQ9H095 443 aaKnown RBP10.02□□□□□ -0.81
USF3-201ENST00000316407 SUDS3Q9H7L9 328 aaPredicted RBP10.02□□□□□ -0.81
USF3-201ENST00000316407 DDX19AQ9NUU7 478 aaKnown RBP10.02□□□□□ -0.81
USF3-201ENST00000316407 GOLGA8BA8MQT2 603 aa10.02□□□□□ -0.81
USF3-201ENST00000316407 CKAP4Q07065 602 aaKnown RBP10.02□□□□□ -0.81
USF3-201ENST00000316407 TRMT1LQ7Z2T5 733 aaKnown RBP10.02□□□□□ -0.81
USF3-201ENST00000316407 ZKSCAN5Q9Y2L8 839 aa10.02□□□□□ -0.81
USF3-201ENST00000316407 TRIM68Q6AZZ1 485 aa10.02□□□□□ -0.81
USF3-201ENST00000316407 PNISRQ8TF01 805 aaKnown RBP10.02□□□□□ -0.81
USF3-201ENST00000316407 GUCA1BQ9UMX6 200 aa10.02□□□□□ -0.81
USF3-201ENST00000316407 MTIF2P46199 727 aaKnown RBP10.01□□□□□ -0.81
USF3-201ENST00000316407 ATP11AP98196 1134 aa10.01□□□□□ -0.81
USF3-201ENST00000316407 CEP120Q8N960 986 aa10.01□□□□□ -0.81
USF3-201ENST00000316407 GOLGA6L9A6NEM1 432 aa10.01□□□□□ -0.81
USF3-201ENST00000316407 IDH1O75874 414 aaKnown RBP10.01□□□□□ -0.81
USF3-201ENST00000316407 NLRP2Q9NX02 1062 aa10.01□□□□□ -0.81
USF3-201ENST00000316407 KIF21BO75037 1637 aa10.01□□□□□ -0.81
USF3-201ENST00000316407 CCDC170Q8IYT3 715 aa10.01□□□□□ -0.81
USF3-201ENST00000316407 CHMP4BP1P59074 171 aa10.01□□□□□ -0.81
USF3-201ENST00000316407 SRCIN1Q9C0H9 1055 aa10.01□□□□□ -0.81
USF3-201ENST00000316407 USH1CQ9Y6N9 552 aa10.01□□□□□ -0.81
USF3-201ENST00000316407 GOLIM4O00461 696 aa10.01□□□□□ -0.81
USF3-201ENST00000316407 SWAP70Q9UH65 585 aa10.01□□□□□ -0.81
USF3-201ENST00000316407 MAP2K2P36507 400 aa10.01□□□□□ -0.81
USF3-201ENST00000316407 EFCAB2Q5VUJ9 269 aa10.01□□□□□ -0.81
USF3-201ENST00000316407 NOL3O60936 208 aaKnown RBP10.01□□□□□ -0.81
USF3-201ENST00000316407 GPRASP1Q5JY77 1395 aa10.01□□□□□ -0.81
USF3-201ENST00000316407 OPA1O60313 960 aa10.01□□□□□ -0.81
USF3-201ENST00000316407 TSC1Q92574 1164 aa10.01□□□□□ -0.81
USF3-201ENST00000316407 CEP85LQ5SZL2 805 aa10.01□□□□□ -0.81
USF3-201ENST00000316407 CARMIL2Q6F5E8 1435 aa10.01□□□□□ -0.81
USF3-201ENST00000316407 RFC1P35251 1148 aaPredicted RBP10□□□□□ -0.81
USF3-201ENST00000316407 HDGFL1Q5TGJ6 251 aa10□□□□□ -0.81
USF3-201ENST00000316407 USP48Q86UV5 1035 aa10□□□□□ -0.81
USF3-201ENST00000316407 FERP16591 822 aa10□□□□□ -0.81
USF3-201ENST00000316407 CCDC25Q86WR0 208 aa10□□□□□ -0.81
USF3-201ENST00000316407 UBLCP1Q8WVY7 318 aaPredicted RBP10□□□□□ -0.81
USF3-201ENST00000316407 RRBP1Q9P2E9 1410 aaKnown RBP10□□□□□ -0.81
USF3-201ENST00000316407 NBPF8Q3BBV2 869 aa10□□□□□ -0.81
USF3-201ENST00000316407 SEC62Q99442 399 aaKnown RBP10□□□□□ -0.81
USF3-201ENST00000316407 KRT32Q14532 448 aa10□□□□□ -0.81
USF3-201ENST00000316407 EHBP1Q8NDI1 1231 aa10□□□□□ -0.81
USF3-201ENST00000316407 FGFR1OPO95684 399 aaKnown RBP10□□□□□ -0.81
USF3-201ENST00000316407 GCKP35557 465 aa10□□□□□ -0.81
USF3-201ENST00000316407 WASF1Q92558 559 aa10□□□□□ -0.81
USF3-201ENST00000316407 TMEM110-MUSTN1A8MSY1 372 aa10□□□□□ -0.81
USF3-201ENST00000316407 DNAJC25Q9H1X3 360 aa10□□□□□ -0.81
USF3-201ENST00000316407 RAD54L2Q9Y4B4 1467 aa10□□□□□ -0.81
USF3-201ENST00000316407 RBM5P52756 815 aaKnown RBP eCLIP10□□□□□ -0.81
USF3-201ENST00000316407 GBP7Q8N8V2 638 aaPredicted RBP10□□□□□ -0.81
USF3-201ENST00000316407 CCDC63Q8NA47 563 aa10□□□□□ -0.81
USF3-201ENST00000316407 RGS22Q8NE09 1264 aa10□□□□□ -0.81
USF3-201ENST00000316407 SMC6Q96SB8 1091 aa10□□□□□ -0.81
USF3-201ENST00000316407 SEC63Q9UGP8 760 aaKnown RBP9.99□□□□□ -0.81
USF3-201ENST00000316407 FEZ2Q9UHY8 353 aaPredicted RBP9.99□□□□□ -0.81
USF3-201ENST00000316407 ELF2Q15723 593 aa9.99□□□□□ -0.81
USF3-201ENST00000316407 SLC4A8Q2Y0W8 1093 aa9.99□□□□□ -0.81
USF3-201ENST00000316407 AFAP1L1Q8TED9 768 aa9.99□□□□□ -0.81
USF3-201ENST00000316407 SAMD15Q9P1V8 674 aa9.99□□□□□ -0.81
USF3-201ENST00000316407 CTAGE5O15320 804 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms