RNA–Protein interactions for RNA: ENST00000312438.7

CLCF1-201, Transcript of cardiotrophin like cytokine factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCF1, Length 1,844 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1-201ENST00000312438 SMARCA5O60264 1052 aaPredicted RBP20.73■□□□□ 0.91
CLCF1-201ENST00000312438 RAB11FIP3O75154 756 aa20.73■□□□□ 0.91
CLCF1-201ENST00000312438 FAM98CQ17RN3 349 aaKnown RBP20.72■□□□□ 0.91
CLCF1-201ENST00000312438 USP21Q9UK80 565 aa20.72■□□□□ 0.91
CLCF1-201ENST00000312438 SEC24BO95487 1268 aa20.71■□□□□ 0.91
CLCF1-201ENST00000312438 HSPA1LP34931 641 aa20.71■□□□□ 0.91
CLCF1-201ENST00000312438 IPO9Q96P70 1041 aaKnown RBP20.71■□□□□ 0.91
CLCF1-201ENST00000312438 SURF6O75683 361 aaKnown RBP20.71■□□□□ 0.91
CLCF1-201ENST00000312438 HSP90AB4PQ58FF6 505 aa20.71■□□□□ 0.91
CLCF1-201ENST00000312438 TTLL7Q6ZT98 887 aa20.71■□□□□ 0.91
CLCF1-201ENST00000312438 LAMB4A4D0S4 1761 aa20.71■□□□□ 0.91
CLCF1-201ENST00000312438 SUCLG2Q96I99 432 aa20.7■□□□□ 0.9
CLCF1-201ENST00000312438 UPF2Q9HAU5 1272 aaKnown RBP20.7■□□□□ 0.9
CLCF1-201ENST00000312438 BCL11AQ9H165 835 aa20.69■□□□□ 0.9
CLCF1-201ENST00000312438 WNK3Q9BYP7 1800 aa20.69■□□□□ 0.9
CLCF1-201ENST00000312438 ACSBG1Q96GR2 724 aa20.69■□□□□ 0.9
CLCF1-201ENST00000312438 KAZALD1Q96I82 304 aa20.69■□□□□ 0.9
CLCF1-201ENST00000312438 SLC4A9Q96Q91 983 aa20.69■□□□□ 0.9
CLCF1-201ENST00000312438 NOP58Q9Y2X3 529 aaKnown RBP20.69■□□□□ 0.9
CLCF1-201ENST00000312438 ATP5J2-PTCD1G3V325 749 aa20.68■□□□□ 0.9
CLCF1-201ENST00000312438 CYP19A1P11511 503 aaPredicted RBP20.68■□□□□ 0.9
CLCF1-201ENST00000312438 OSBPL3Q9H4L5 887 aa20.68■□□□□ 0.9
CLCF1-201ENST00000312438 TTC22Q5TAA0 569 aa20.67■□□□□ 0.9
CLCF1-201ENST00000312438 MEX3CQ5U5Q3 659 aaKnown RBP20.67■□□□□ 0.9
CLCF1-201ENST00000312438 OTUD7AQ8TE49 926 aaPredicted RBP20.67■□□□□ 0.9
CLCF1-201ENST00000312438 KIF1BPQ96EK5 621 aa20.67■□□□□ 0.9
CLCF1-201ENST00000312438 BICC1Q9H694 974 aaKnown RBP20.67■□□□□ 0.9
CLCF1-201ENST00000312438 A0A087WZG4 1122 aa20.66■□□□□ 0.9
CLCF1-201ENST00000312438 A0A0G2JS52 829 aa20.65■□□□□ 0.9
CLCF1-201ENST00000312438 RHPN1Q8TCX5 695 aa20.65■□□□□ 0.9
CLCF1-201ENST00000312438 ZBTB3Q9H5J0 574 aa20.65■□□□□ 0.9
CLCF1-201ENST00000312438 GSPT1P15170 499 aaKnown RBP20.64■□□□□ 0.9
CLCF1-201ENST00000312438 PDE1AP54750 535 aa20.64■□□□□ 0.9
CLCF1-201ENST00000312438 KIF6Q6ZMV9 814 aa20.64■□□□□ 0.9
CLCF1-201ENST00000312438 CCDC191Q8NCU4 936 aa20.64■□□□□ 0.9
CLCF1-201ENST00000312438 DDRGK1Q96HY6 314 aa20.64■□□□□ 0.9
CLCF1-201ENST00000312438 CWC25Q9NXE8 425 aaPredicted RBP20.64■□□□□ 0.9
CLCF1-201ENST00000312438 ITGB4P16144 1822 aa20.64■□□□□ 0.89
CLCF1-201ENST00000312438 COL15A1P39059 1388 aa20.64■□□□□ 0.89
CLCF1-201ENST00000312438 H7C1W4 665 aa20.64■□□□□ 0.89
CLCF1-201ENST00000312438 SMARCC1Q92922 1105 aaPredicted RBP20.64■□□□□ 0.89
CLCF1-201ENST00000312438 ZNF330Q9Y3S2 320 aaPredicted RBP20.64■□□□□ 0.89
CLCF1-201ENST00000312438 MSH5O43196 834 aa20.63■□□□□ 0.89
CLCF1-201ENST00000312438 TCIRG1Q13488 830 aa20.63■□□□□ 0.89
CLCF1-201ENST00000312438 UBE3BQ7Z3V4 1068 aa20.63■□□□□ 0.89
CLCF1-201ENST00000312438 SALL3Q9BXA9 1300 aa20.63■□□□□ 0.89
CLCF1-201ENST00000312438 ERC1Q8IUD2 1116 aa20.62■□□□□ 0.89
CLCF1-201ENST00000312438 MX1P20591 662 aa20.62■□□□□ 0.89
CLCF1-201ENST00000312438 CASP7P55210 303 aa20.62■□□□□ 0.89
CLCF1-201ENST00000312438 MYT1Q01538 1121 aa20.62■□□□□ 0.89
CLCF1-201ENST00000312438 TRIM28Q13263 835 aaKnown RBP20.62■□□□□ 0.89
CLCF1-201ENST00000312438 STAP2Q9UGK3 403 aa20.62■□□□□ 0.89
CLCF1-201ENST00000312438 LOC102724428A0A0B4J2F2 783 aa20.61■□□□□ 0.89
CLCF1-201ENST00000312438 EIF5BO60841 1220 aaKnown RBP20.61■□□□□ 0.89
CLCF1-201ENST00000312438 ATP6V1AP38606 617 aa20.61■□□□□ 0.89
CLCF1-201ENST00000312438 IL6STP40189 918 aaPredicted RBP20.61■□□□□ 0.89
CLCF1-201ENST00000312438 SIK1P57059 783 aa20.61■□□□□ 0.89
CLCF1-201ENST00000312438 OS9Q13438 667 aaPredicted RBP20.61■□□□□ 0.89
CLCF1-201ENST00000312438 EPHA10Q5JZY3 1008 aa20.61■□□□□ 0.89
CLCF1-201ENST00000312438 GJD4Q96KN9 370 aaPredicted RBP20.61■□□□□ 0.89
CLCF1-201ENST00000312438 ISCA1Q9BUE6 129 aa20.61■□□□□ 0.89
CLCF1-201ENST00000312438 IL1RAPL2Q9NP60 686 aa20.61■□□□□ 0.89
CLCF1-201ENST00000312438 KCNQ2O43526 872 aa20.6■□□□□ 0.89
CLCF1-201ENST00000312438 CDC45O75419 566 aa20.6■□□□□ 0.89
CLCF1-201ENST00000312438 RABL6Q3YEC7 729 aaPredicted RBP20.6■□□□□ 0.89
CLCF1-201ENST00000312438 JARID2Q92833 1246 aaPredicted RBP20.6■□□□□ 0.89
CLCF1-201ENST00000312438 ZBTB1Q9Y2K1 713 aa20.6■□□□□ 0.89
CLCF1-201ENST00000312438 MAP3K15Q6ZN16 1313 aa20.6■□□□□ 0.89
CLCF1-201ENST00000312438 MFAP1P55081 439 aaKnown RBP20.6■□□□□ 0.89
CLCF1-201ENST00000312438 TBC1D32Q96NH3 1257 aa20.6■□□□□ 0.89
CLCF1-201ENST00000312438 ARXQ96QS3 562 aa20.6■□□□□ 0.89
CLCF1-201ENST00000312438 AFF2P51816 1311 aa20.59■□□□□ 0.89
CLCF1-201ENST00000312438 G3BP1Q13283 466 aaKnown RBP eCLIP20.59■□□□□ 0.89
CLCF1-201ENST00000312438 GIGYF2Q6Y7W6 1299 aaKnown RBP20.59■□□□□ 0.89
CLCF1-201ENST00000312438 TBC1D9Q6ZT07 1266 aa20.59■□□□□ 0.89
CLCF1-201ENST00000312438 PA2G4Q9UQ80 394 aaKnown RBP20.59■□□□□ 0.89
CLCF1-201ENST00000312438 DOT1LQ8TEK3 1739 aa20.58■□□□□ 0.89
CLCF1-201ENST00000312438 SDSP20132 328 aa20.58■□□□□ 0.89
CLCF1-201ENST00000312438 AOX1Q06278 1338 aa20.58■□□□□ 0.88
CLCF1-201ENST00000312438 PALLDQ8WX93 1383 aa20.57■□□□□ 0.88
CLCF1-201ENST00000312438 HSP90AB3PQ58FF7 597 aa20.57■□□□□ 0.88
CLCF1-201ENST00000312438 CLASRPQ8N2M8 674 aaKnown RBP20.57■□□□□ 0.88
CLCF1-201ENST00000312438 TRPC5Q9UL62 973 aaPredicted RBP20.57■□□□□ 0.88
CLCF1-201ENST00000312438 ERVV-1B6SEH8 477 aa20.57■□□□□ 0.88
CLCF1-201ENST00000312438 ONECUT3O60422 494 aaPredicted RBP20.57■□□□□ 0.88
CLCF1-201ENST00000312438 ARFGEF2Q9Y6D5 1785 aa20.57■□□□□ 0.88
CLCF1-201ENST00000312438 INTS5Q6P9B9 1019 aaKnown RBP20.56■□□□□ 0.88
CLCF1-201ENST00000312438 C22orf23Q9BZE7 217 aa20.56■□□□□ 0.88
CLCF1-201ENST00000312438 COPRSQ9NQ92 184 aa20.56■□□□□ 0.88
CLCF1-201ENST00000312438 CCDC87Q9NVE4 849 aa20.56■□□□□ 0.88
CLCF1-201ENST00000312438 EIF5P55010 431 aaKnown RBP20.55■□□□□ 0.88
CLCF1-201ENST00000312438 FOXO4P98177 505 aa20.55■□□□□ 0.88
CLCF1-201ENST00000312438 CASC1Q6TDU7 716 aa20.55■□□□□ 0.88
CLCF1-201ENST00000312438 NUTM1Q86Y26 1132 aa20.55■□□□□ 0.88
CLCF1-201ENST00000312438 CRKLP46109 303 aaKnown RBP20.55■□□□□ 0.88
CLCF1-201ENST00000312438 RFX5P48382 616 aaPredicted RBP20.54■□□□□ 0.88
CLCF1-201ENST00000312438 ITPK1Q13572 414 aa20.54■□□□□ 0.88
CLCF1-201ENST00000312438 LMBR1LQ6UX01 489 aa20.54■□□□□ 0.88
CLCF1-201ENST00000312438 DZIP3Q86Y13 1208 aaKnown RBP20.54■□□□□ 0.88
CLCF1-201ENST00000312438 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms