RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 METTL22Q9BUU2 404 aaPredicted RBP14.01□□□□□ -0.17
CUX1-202ENST00000292538 IL25Q9H293 177 aa14.01□□□□□ -0.17
CUX1-202ENST00000292538 KAT6BQ8WYB5 2073 aa14.01□□□□□ -0.17
CUX1-202ENST00000292538 NCOA3Q9Y6Q9 1424 aa14.01□□□□□ -0.17
CUX1-202ENST00000292538 UPF3BQ9BZI7 483 aaKnown RBP14.01□□□□□ -0.17
CUX1-202ENST00000292538 TMOD3Q9NYL9 352 aa14.01□□□□□ -0.17
CUX1-202ENST00000292538 USP54Q70EL1 1684 aa14.01□□□□□ -0.17
CUX1-202ENST00000292538 HEG1Q9ULI3 1381 aa14.01□□□□□ -0.17
CUX1-202ENST00000292538 VIRMAQ69YN4 1812 aaKnown RBP14□□□□□ -0.17
CUX1-202ENST00000292538 RABEP1Q15276 862 aa14□□□□□ -0.17
CUX1-202ENST00000292538 SNX21Q969T3 373 aa14□□□□□ -0.17
CUX1-202ENST00000292538 CARD10Q9BWT7 1032 aa14□□□□□ -0.17
CUX1-202ENST00000292538 ASAP1Q9ULH1 1129 aa14□□□□□ -0.17
CUX1-202ENST00000292538 NBPF26B4DH59 902 aa14□□□□□ -0.17
CUX1-202ENST00000292538 NBPF14Q5TI25 921 aa14□□□□□ -0.17
CUX1-202ENST00000292538 NBPF10Q6P3W6 841 aaKnown RBP14□□□□□ -0.17
CUX1-202ENST00000292538 NBPF15Q8N660 670 aa14□□□□□ -0.17
CUX1-202ENST00000292538 LARP6Q9BRS8 491 aaKnown RBP14□□□□□ -0.17
CUX1-202ENST00000292538 BOLA2Q9H3K6 86 aa14□□□□□ -0.17
CUX1-202ENST00000292538 TLR7Q9NYK1 1049 aaKnown RBP14□□□□□ -0.17
CUX1-202ENST00000292538 PALD1Q9ULE6 856 aa14□□□□□ -0.17
CUX1-202ENST00000292538 CPDO75976 1380 aa13.99□□□□□ -0.17
CUX1-202ENST00000292538 SALL3Q9BXA9 1300 aa13.99□□□□□ -0.17
CUX1-202ENST00000292538 NDUFB9Q9Y6M9 179 aa13.99□□□□□ -0.17
CUX1-202ENST00000292538 FAM208AQ9UK61 1670 aaKnown RBP13.99□□□□□ -0.17
CUX1-202ENST00000292538 CAMTA1Q9Y6Y1 1673 aa13.99□□□□□ -0.17
CUX1-202ENST00000292538 ST18O60284 1047 aa13.99□□□□□ -0.17
CUX1-202ENST00000292538 CNTROBQ8N137 903 aa13.99□□□□□ -0.17
CUX1-202ENST00000292538 HDAC5Q9UQL6 1122 aa13.99□□□□□ -0.17
CUX1-202ENST00000292538 PI4K2BQ8TCG2 481 aa13.98□□□□□ -0.17
CUX1-202ENST00000292538 STAP2Q9UGK3 403 aa13.98□□□□□ -0.17
CUX1-202ENST00000292538 ALS2Q96Q42 1657 aa13.98□□□□□ -0.17
CUX1-202ENST00000292538 MCCP23508 829 aa13.97□□□□□ -0.17
CUX1-202ENST00000292538 KIAA1211Q6ZU35 1233 aa13.97□□□□□ -0.17
CUX1-202ENST00000292538 EAF2Q96CJ1 260 aaPredicted RBP13.97□□□□□ -0.17
CUX1-202ENST00000292538 DIAPH3Q9NSV4 1193 aa13.97□□□□□ -0.17
CUX1-202ENST00000292538 DTNBO60941 627 aa13.97□□□□□ -0.17
CUX1-202ENST00000292538 SASH1O94885 1247 aa13.97□□□□□ -0.17
CUX1-202ENST00000292538 MCM4P33991 863 aa13.97□□□□□ -0.17
CUX1-202ENST00000292538 LMBR1LQ6UX01 489 aa13.97□□□□□ -0.17
CUX1-202ENST00000292538 GPATCH3Q96I76 525 aa13.97□□□□□ -0.17
CUX1-202ENST00000292538 ZGPATQ8N5A5 531 aaKnown RBP13.97□□□□□ -0.17
CUX1-202ENST00000292538 EDC3Q96F86 508 aaKnown RBP13.97□□□□□ -0.17
CUX1-202ENST00000292538 PXDNLA1KZ92 1463 aa13.96□□□□□ -0.17
CUX1-202ENST00000292538 TNPO1Q92973 898 aaKnown RBP13.96□□□□□ -0.17
CUX1-202ENST00000292538 ECHDC1Q9NTX5 307 aa13.96□□□□□ -0.17
CUX1-202ENST00000292538 EIF5BO60841 1220 aaKnown RBP13.96□□□□□ -0.18
CUX1-202ENST00000292538 PIGBQ92521 554 aa13.96□□□□□ -0.18
CUX1-202ENST00000292538 ERVV-2B6SEH9 535 aa13.95□□□□□ -0.18
CUX1-202ENST00000292538 GLRX3O76003 335 aaKnown RBP13.95□□□□□ -0.18
CUX1-202ENST00000292538 SSFA2P28290 1259 aa13.95□□□□□ -0.18
CUX1-202ENST00000292538 FOXD4L6Q3SYB3 417 aaPredicted RBP13.95□□□□□ -0.18
CUX1-202ENST00000292538 FOXD4L3Q6VB84 417 aaPredicted RBP13.95□□□□□ -0.18
CUX1-202ENST00000292538 ERC1Q8IUD2 1116 aa13.95□□□□□ -0.18
CUX1-202ENST00000292538 DNAJC10Q8IXB1 793 aa13.95□□□□□ -0.18
CUX1-202ENST00000292538 NEUROD6Q96NK8 337 aa13.95□□□□□ -0.18
CUX1-202ENST00000292538 LMO7Q8WWI1 1683 aa13.95□□□□□ -0.18
CUX1-202ENST00000292538 OVOS2A0A0G2JMS6 1433 aa13.95□□□□□ -0.18
CUX1-202ENST00000292538 COL5A2P05997 1499 aaPredicted RBP13.95□□□□□ -0.18
CUX1-202ENST00000292538 KCNJ4P48050 445 aa13.95□□□□□ -0.18
CUX1-202ENST00000292538 TPRNQ4KMQ1 711 aa13.95□□□□□ -0.18
CUX1-202ENST00000292538 PLBD2Q8NHP8 589 aa13.95□□□□□ -0.18
CUX1-202ENST00000292538 ACSBG1Q96GR2 724 aa13.95□□□□□ -0.18
CUX1-202ENST00000292538 GPTP24298 496 aa13.94□□□□□ -0.18
CUX1-202ENST00000292538 TFCP2Q12800 502 aa13.94□□□□□ -0.18
CUX1-202ENST00000292538 LRP10Q7Z4F1 713 aa13.94□□□□□ -0.18
CUX1-202ENST00000292538 MTX1Q13505 466 aa13.94□□□□□ -0.18
CUX1-202ENST00000292538 PKP1Q13835 747 aa13.94□□□□□ -0.18
CUX1-202ENST00000292538 FAM177BA6PVY3 158 aa13.94□□□□□ -0.18
CUX1-202ENST00000292538 ZNF594Q96JF6 807 aaPredicted RBP13.94□□□□□ -0.18
CUX1-202ENST00000292538 DNAJC2Q99543 621 aaKnown RBP13.94□□□□□ -0.18
CUX1-202ENST00000292538 PHRF1Q9P1Y6 1649 aaKnown RBP13.93□□□□□ -0.18
CUX1-202ENST00000292538 EXOC5O00471 708 aa13.93□□□□□ -0.18
CUX1-202ENST00000292538 CPA1P15085 419 aa13.93□□□□□ -0.18
CUX1-202ENST00000292538 FSD1Q9BTV5 496 aa13.93□□□□□ -0.18
CUX1-202ENST00000292538 KDM3BQ7LBC6 1761 aa13.92□□□□□ -0.18
CUX1-202ENST00000292538 CHAMP1Q96JM3 812 aa13.92□□□□□ -0.18
CUX1-202ENST00000292538 FAM227BQ96M60 508 aa13.92□□□□□ -0.18
CUX1-202ENST00000292538 CWC25Q9NXE8 425 aaPredicted RBP13.92□□□□□ -0.18
CUX1-202ENST00000292538 FAM89AQ96GI7 184 aa13.92□□□□□ -0.18
CUX1-202ENST00000292538 TRAK2O60296 914 aa13.91□□□□□ -0.18
CUX1-202ENST00000292538 PRIM1P49642 420 aaKnown RBP13.91□□□□□ -0.18
CUX1-202ENST00000292538 SYNE4Q8N205 404 aa13.91□□□□□ -0.18
CUX1-202ENST00000292538 CHGBP05060 677 aa13.91□□□□□ -0.18
CUX1-202ENST00000292538 NCLP19338 710 aaKnown RBP13.91□□□□□ -0.18
CUX1-202ENST00000292538 TIMM10P62072 90 aa13.91□□□□□ -0.18
CUX1-202ENST00000292538 PTPN12Q05209 780 aaKnown RBP13.91□□□□□ -0.18
CUX1-202ENST00000292538 STRCQ7RTU9 1775 aa13.9□□□□□ -0.18
CUX1-202ENST00000292538 SGSM2O43147 1006 aa13.9□□□□□ -0.18
CUX1-202ENST00000292538 PRPF40BQ6NWY9 871 aaKnown RBP13.9□□□□□ -0.18
CUX1-202ENST00000292538 ATG3Q9NT62 314 aa13.9□□□□□ -0.18
CUX1-202ENST00000292538 PTH1RQ03431 593 aa13.9□□□□□ -0.18
CUX1-202ENST00000292538 TMX3Q96JJ7 454 aa13.9□□□□□ -0.18
CUX1-202ENST00000292538 TBC1D2BQ9UPU7 963 aa13.9□□□□□ -0.18
CUX1-202ENST00000292538 TTC41PQ6P2S7 1318 aa13.89□□□□□ -0.19
CUX1-202ENST00000292538 RASEFQ8IZ41 740 aa13.89□□□□□ -0.19
CUX1-202ENST00000292538 GBP4Q96PP9 640 aa13.89□□□□□ -0.19
CUX1-202ENST00000292538 DBNDD2Q9BQY9 259 aa13.89□□□□□ -0.19
CUX1-202ENST00000292538 UTYO14607 1347 aa13.89□□□□□ -0.19
CUX1-202ENST00000292538 AOX1Q06278 1338 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms