RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 HSPA4P34932 840 aa22.28■■□□□ 1.16
SHKBP1-201ENST00000291842 XAGE3Q8WTP9 111 aa22.28■■□□□ 1.16
SHKBP1-201ENST00000291842 SIL1Q9H173 461 aa22.27■■□□□ 1.16
SHKBP1-201ENST00000291842 IFIT2P09913 472 aaKnown RBP22.27■■□□□ 1.16
SHKBP1-201ENST00000291842 MCM2P49736 904 aa22.27■■□□□ 1.16
SHKBP1-201ENST00000291842 KLHL40Q2TBA0 621 aa22.27■■□□□ 1.16
SHKBP1-201ENST00000291842 COPS6Q7L5N1 327 aa22.27■■□□□ 1.16
SHKBP1-201ENST00000291842 AACSQ86V21 672 aa22.27■■□□□ 1.16
SHKBP1-201ENST00000291842 JARID2Q92833 1246 aaPredicted RBP22.27■■□□□ 1.16
SHKBP1-201ENST00000291842 LMBRD1Q9NUN5 540 aa22.27■■□□□ 1.16
SHKBP1-201ENST00000291842 GLRX3O76003 335 aaKnown RBP22.26■■□□□ 1.15
SHKBP1-201ENST00000291842 IFNL2Q8IZJ0 200 aa22.26■■□□□ 1.15
SHKBP1-201ENST00000291842 KLHDC4Q8TBB5 520 aa22.26■■□□□ 1.15
SHKBP1-201ENST00000291842 USP16Q9Y5T5 823 aa22.26■■□□□ 1.15
SHKBP1-201ENST00000291842 CYP27B1O15528 508 aa22.26■■□□□ 1.15
SHKBP1-201ENST00000291842 PRPF40AO75400 957 aaKnown RBP22.26■■□□□ 1.15
SHKBP1-201ENST00000291842 TTC41PQ6P2S7 1318 aa22.25■■□□□ 1.15
SHKBP1-201ENST00000291842 LSG1Q9H089 658 aaKnown RBP22.25■■□□□ 1.15
SHKBP1-201ENST00000291842 ECHDC1Q9NTX5 307 aa22.25■■□□□ 1.15
SHKBP1-201ENST00000291842 RAD50Q92878 1312 aa22.25■■□□□ 1.15
SHKBP1-201ENST00000291842 FAM43AQ8N2R8 423 aa22.25■■□□□ 1.15
SHKBP1-201ENST00000291842 MYD88Q99836 296 aa22.25■■□□□ 1.15
SHKBP1-201ENST00000291842 LARP6Q9BRS8 491 aaKnown RBP22.25■■□□□ 1.15
SHKBP1-201ENST00000291842 USP42Q9H9J4 1324 aaKnown RBP22.24■■□□□ 1.15
SHKBP1-201ENST00000291842 ADAMTS7Q9UKP4 1686 aa22.24■■□□□ 1.15
SHKBP1-201ENST00000291842 SASH1O94885 1247 aa22.24■■□□□ 1.15
SHKBP1-201ENST00000291842 PRKCSHP14314 528 aaPredicted RBP22.24■■□□□ 1.15
SHKBP1-201ENST00000291842 CUL4AQ13619 759 aa22.24■■□□□ 1.15
SHKBP1-201ENST00000291842 RASEFQ8IZ41 740 aa22.24■■□□□ 1.15
SHKBP1-201ENST00000291842 STRCP1A6NGW2 1772 aa22.24■■□□□ 1.15
SHKBP1-201ENST00000291842 C5P01031 1676 aa22.24■■□□□ 1.15
SHKBP1-201ENST00000291842 HSPA2P54652 639 aa22.24■■□□□ 1.15
SHKBP1-201ENST00000291842 CCDC8Q9H0W5 538 aaPredicted RBP22.24■■□□□ 1.15
SHKBP1-201ENST00000291842 DIAPH3Q9NSV4 1193 aa22.24■■□□□ 1.15
SHKBP1-201ENST00000291842 SNX14Q9Y5W7 946 aa22.24■■□□□ 1.15
SHKBP1-201ENST00000291842 G3BP1Q13283 466 aaKnown RBP eCLIP22.23■■□□□ 1.15
SHKBP1-201ENST00000291842 CAVIN1Q6NZI2 390 aaKnown RBP22.23■■□□□ 1.15
SHKBP1-201ENST00000291842 LARP1Q6PKG0 1096 aaKnown RBP22.23■■□□□ 1.15
SHKBP1-201ENST00000291842 KIAA1211Q6ZU35 1233 aa22.23■■□□□ 1.15
SHKBP1-201ENST00000291842 TTC5Q8N0Z6 440 aa22.23■■□□□ 1.15
SHKBP1-201ENST00000291842 HDAC5Q9UQL6 1122 aa22.23■■□□□ 1.15
SHKBP1-201ENST00000291842 NEURL1BA8MQ27 555 aa22.23■■□□□ 1.15
SHKBP1-201ENST00000291842 NEXNQ0ZGT2 675 aa22.23■■□□□ 1.15
SHKBP1-201ENST00000291842 ERC1Q8IUD2 1116 aa22.23■■□□□ 1.15
SHKBP1-201ENST00000291842 SCN11AQ9UI33 1791 aa22.22■■□□□ 1.15
SHKBP1-201ENST00000291842 EPHA10Q5JZY3 1008 aa22.22■■□□□ 1.15
SHKBP1-201ENST00000291842 EAF2Q96CJ1 260 aaPredicted RBP22.22■■□□□ 1.15
SHKBP1-201ENST00000291842 TLR7Q9NYK1 1049 aaKnown RBP22.22■■□□□ 1.15
SHKBP1-201ENST00000291842 UTYO14607 1347 aa22.22■■□□□ 1.15
SHKBP1-201ENST00000291842 RRAGDQ9NQL2 400 aaPredicted RBP22.21■■□□□ 1.15
SHKBP1-201ENST00000291842 CPA1P15085 419 aa22.21■■□□□ 1.15
SHKBP1-201ENST00000291842 FOXD4L6Q3SYB3 417 aaPredicted RBP22.21■■□□□ 1.15
SHKBP1-201ENST00000291842 FOXD4L3Q6VB84 417 aaPredicted RBP22.21■■□□□ 1.15
SHKBP1-201ENST00000291842 CADPS2Q86UW7 1296 aa22.21■■□□□ 1.15
SHKBP1-201ENST00000291842 IL17RAQ96F46 866 aa22.21■■□□□ 1.15
SHKBP1-201ENST00000291842 GPATCH3Q96I76 525 aa22.21■■□□□ 1.15
SHKBP1-201ENST00000291842 ISY1Q9ULR0 285 aaKnown RBP22.21■■□□□ 1.15
SHKBP1-201ENST00000291842 PTH1RQ03431 593 aa22.2■■□□□ 1.15
SHKBP1-201ENST00000291842 GCKRQ14397 625 aa22.2■■□□□ 1.15
SHKBP1-201ENST00000291842 DCAF5Q96JK2 942 aa22.2■■□□□ 1.15
SHKBP1-201ENST00000291842 SNRPA1P09661 255 aaKnown RBP22.2■■□□□ 1.14
SHKBP1-201ENST00000291842 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.2■■□□□ 1.14
SHKBP1-201ENST00000291842 COL18A1P39060 1754 aa22.2■■□□□ 1.14
SHKBP1-201ENST00000291842 ANKRD13DQ6ZTN6 518 aa22.19■■□□□ 1.14
SHKBP1-201ENST00000291842 METTL22Q9BUU2 404 aaPredicted RBP22.19■■□□□ 1.14
SHKBP1-201ENST00000291842 TNS3Q68CZ2 1445 aa22.19■■□□□ 1.14
SHKBP1-201ENST00000291842 CABP4P57796 275 aa22.19■■□□□ 1.14
SHKBP1-201ENST00000291842 GPT2Q8TD30 523 aa22.19■■□□□ 1.14
SHKBP1-201ENST00000291842 RBM27Q9P2N5 1060 aaKnown RBP22.19■■□□□ 1.14
SHKBP1-201ENST00000291842 EPB41L2O43491 1005 aaKnown RBP22.18■■□□□ 1.14
SHKBP1-201ENST00000291842 ATP5J2-PTCD1G3V325 749 aa22.18■■□□□ 1.14
SHKBP1-201ENST00000291842 PTCD1O75127 700 aaKnown RBP22.18■■□□□ 1.14
SHKBP1-201ENST00000291842 BRD1O95696 1058 aa22.18■■□□□ 1.14
SHKBP1-201ENST00000291842 SPATA31A3Q5VYP0 1347 aa22.18■■□□□ 1.14
SHKBP1-201ENST00000291842 INTS4Q96HW7 963 aaKnown RBP22.18■■□□□ 1.14
SHKBP1-201ENST00000291842 LMTK3Q96Q04 1460 aa22.18■■□□□ 1.14
SHKBP1-201ENST00000291842 LRP10Q7Z4F1 713 aa22.17■■□□□ 1.14
SHKBP1-201ENST00000291842 FMNL2Q96PY5 1086 aa22.17■■□□□ 1.14
SHKBP1-201ENST00000291842 AK2P54819 239 aa22.17■■□□□ 1.14
SHKBP1-201ENST00000291842 BOLA2Q9H3K6 86 aa22.17■■□□□ 1.14
SHKBP1-201ENST00000291842 DTNBO60941 627 aa22.16■■□□□ 1.14
SHKBP1-201ENST00000291842 ZSCAN23Q3MJ62 389 aa22.16■■□□□ 1.14
SHKBP1-201ENST00000291842 PRPF40BQ6NWY9 871 aaKnown RBP22.16■■□□□ 1.14
SHKBP1-201ENST00000291842 DDX54Q8TDD1 881 aaKnown RBP22.16■■□□□ 1.14
SHKBP1-201ENST00000291842 RUFY2Q8WXA3 655 aa22.16■■□□□ 1.14
SHKBP1-201ENST00000291842 EVI5LQ96CN4 794 aa22.16■■□□□ 1.14
SHKBP1-201ENST00000291842 FAM227BQ96M60 508 aa22.16■■□□□ 1.14
SHKBP1-201ENST00000291842 NSFL1CQ9UNZ2 370 aaKnown RBP22.16■■□□□ 1.14
SHKBP1-201ENST00000291842 CRYBG1Q9Y4K1 1723 aa22.16■■□□□ 1.14
SHKBP1-201ENST00000291842 CASTP20810 708 aaKnown RBP22.16■■□□□ 1.14
SHKBP1-201ENST00000291842 UBE3BQ7Z3V4 1068 aa22.15■■□□□ 1.14
SHKBP1-201ENST00000291842 TTC14Q96N46 770 aa22.15■■□□□ 1.14
SHKBP1-201ENST00000291842 ADCK5Q3MIX3 580 aa22.14■■□□□ 1.14
SHKBP1-201ENST00000291842 DCCP43146 1447 aa22.14■■□□□ 1.14
SHKBP1-201ENST00000291842 RUFY3Q7L099 469 aa22.14■■□□□ 1.13
SHKBP1-201ENST00000291842 NMIQ13287 307 aaPredicted RBP22.13■■□□□ 1.13
SHKBP1-201ENST00000291842 EDC3Q96F86 508 aaKnown RBP22.12■■□□□ 1.13
SHKBP1-201ENST00000291842 JAKMIP1Q96N16 626 aaKnown RBP22.12■■□□□ 1.13
SHKBP1-201ENST00000291842 BRINP3Q76B58 766 aa22.11■■□□□ 1.13
SHKBP1-201ENST00000291842 GDPD2Q9HCC8 539 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms