RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 LMTK3Q96Q04 1460 aa21.63■■□□□ 1.05
PCDH1-201ENST00000287008 MYO1BO43795 1136 aa21.63■■□□□ 1.05
PCDH1-201ENST00000287008 CCDC194A0A1B0GVG4 234 aa21.63■■□□□ 1.05
PCDH1-201ENST00000287008 GOLGA8AA7E2F4 631 aa21.63■■□□□ 1.05
PCDH1-201ENST00000287008 GOLGA8BA8MQT2 603 aa21.63■■□□□ 1.05
PCDH1-201ENST00000287008 TSPY2A6NKD2 308 aa21.63■■□□□ 1.05
PCDH1-201ENST00000287008 HSP90AA2PQ14568 343 aaPredicted RBP21.63■■□□□ 1.05
PCDH1-201ENST00000287008 TXLNBQ8N3L3 684 aa21.63■■□□□ 1.05
PCDH1-201ENST00000287008 RSPH6AQ9H0K4 717 aa21.63■■□□□ 1.05
PCDH1-201ENST00000287008 TEX35Q5T0J7 233 aa21.63■■□□□ 1.05
PCDH1-201ENST00000287008 CBFA2T2O43439 604 aa21.62■■□□□ 1.05
PCDH1-201ENST00000287008 KSR2Q6VAB6 950 aa21.62■■□□□ 1.05
PCDH1-201ENST00000287008 ATP2B3Q16720 1220 aa21.62■■□□□ 1.05
PCDH1-201ENST00000287008 LMBR1LQ6UX01 489 aa21.62■■□□□ 1.05
PCDH1-201ENST00000287008 SPC24Q8NBT2 197 aa21.62■■□□□ 1.05
PCDH1-201ENST00000287008 NFATC2IPQ8NCF5 419 aa21.62■■□□□ 1.05
PCDH1-201ENST00000287008 GRM8O00222 908 aa21.61■■□□□ 1.05
PCDH1-201ENST00000287008 RHPN1Q8TCX5 695 aa21.61■■□□□ 1.05
PCDH1-201ENST00000287008 SCAND2PQ9GZW5 306 aaPredicted RBP21.61■■□□□ 1.05
PCDH1-201ENST00000287008 PHAXQ9H814 394 aaKnown RBP21.61■■□□□ 1.05
PCDH1-201ENST00000287008 PTPRKQ15262 1439 aa21.61■■□□□ 1.05
PCDH1-201ENST00000287008 PPP1R12BO60237 982 aaPredicted RBP21.61■■□□□ 1.05
PCDH1-201ENST00000287008 TPTE2Q6XPS3 522 aa21.61■■□□□ 1.05
PCDH1-201ENST00000287008 LIMCH1Q9UPQ0 1083 aa21.61■■□□□ 1.05
PCDH1-201ENST00000287008 RTCBQ9Y3I0 505 aaKnown RBP21.61■■□□□ 1.05
PCDH1-201ENST00000287008 NPATQ14207 1427 aa21.61■■□□□ 1.05
PCDH1-201ENST00000287008 KIF5BP33176 963 aa21.61■■□□□ 1.05
PCDH1-201ENST00000287008 DCAF5Q96JK2 942 aa21.61■■□□□ 1.05
PCDH1-201ENST00000287008 SIRT1Q96EB6 747 aa21.6■■□□□ 1.05
PCDH1-201ENST00000287008 FBXO3Q9UK99 471 aa21.6■■□□□ 1.05
PCDH1-201ENST00000287008 CHMP4BP1P59074 171 aa21.6■■□□□ 1.05
PCDH1-201ENST00000287008 SCLT1Q96NL6 688 aa21.6■■□□□ 1.05
PCDH1-201ENST00000287008 CRNKL1Q9BZJ0 848 aaKnown RBP21.6■■□□□ 1.05
PCDH1-201ENST00000287008 GSTO1P78417 241 aa21.6■■□□□ 1.05
PCDH1-201ENST00000287008 MTHFSDQ2M296 383 aaKnown RBP21.6■■□□□ 1.05
PCDH1-201ENST00000287008 OGFOD1Q8N543 542 aa21.6■■□□□ 1.05
PCDH1-201ENST00000287008 TFCP2L1Q9NZI6 479 aa21.6■■□□□ 1.05
PCDH1-201ENST00000287008 IBSPP21815 317 aaPredicted RBP21.59■■□□□ 1.05
PCDH1-201ENST00000287008 NLRP5P59047 1200 aa21.59■■□□□ 1.05
PCDH1-201ENST00000287008 ABCC2Q92887 1545 aa21.59■■□□□ 1.05
PCDH1-201ENST00000287008 DZIP3Q86Y13 1208 aaKnown RBP21.59■■□□□ 1.05
PCDH1-201ENST00000287008 LINS1Q8NG48 757 aa21.59■■□□□ 1.05
PCDH1-201ENST00000287008 MEIS3Q99687 375 aa21.59■■□□□ 1.05
PCDH1-201ENST00000287008 PRAG1Q86YV5 1406 aa21.59■■□□□ 1.05
PCDH1-201ENST00000287008 TMEM266Q2M3C6 531 aa21.59■■□□□ 1.05
PCDH1-201ENST00000287008 PPP4R3AQ6IN85 833 aa21.59■■□□□ 1.05
PCDH1-201ENST00000287008 MFSD6Q6ZSS7 791 aa21.59■■□□□ 1.05
PCDH1-201ENST00000287008 EHMT1Q9H9B1 1298 aa21.59■■□□□ 1.05
PCDH1-201ENST00000287008 CCDC12Q8WUD4 166 aaPredicted RBP21.58■■□□□ 1.05
PCDH1-201ENST00000287008 SSRP1Q08945 709 aaKnown RBP21.58■■□□□ 1.05
PCDH1-201ENST00000287008 ZGPATQ8N5A5 531 aaKnown RBP21.58■■□□□ 1.05
PCDH1-201ENST00000287008 ZFYP08048 801 aaPredicted RBP21.58■■□□□ 1.04
PCDH1-201ENST00000287008 TMEM67Q5HYA8 995 aa21.58■■□□□ 1.04
PCDH1-201ENST00000287008 NBPF14Q5TI25 921 aa21.58■■□□□ 1.04
PCDH1-201ENST00000287008 ERCC4Q92889 916 aaPredicted RBP21.58■■□□□ 1.04
PCDH1-201ENST00000287008 ITSN2Q9NZM3 1697 aa21.58■■□□□ 1.04
PCDH1-201ENST00000287008 EIF5P55010 431 aaKnown RBP21.57■■□□□ 1.04
PCDH1-201ENST00000287008 NYXQ9GZU5 481 aa21.57■■□□□ 1.04
PCDH1-201ENST00000287008 SMTNL1A8MU46 457 aa21.57■■□□□ 1.04
PCDH1-201ENST00000287008 IL15P40933 162 aaPredicted RBP21.57■■□□□ 1.04
PCDH1-201ENST00000287008 HAND2P61296 217 aa21.57■■□□□ 1.04
PCDH1-201ENST00000287008 BMP2KLQ5H9B9 411 aa21.57■■□□□ 1.04
PCDH1-201ENST00000287008 EYA1Q99502 592 aa21.57■■□□□ 1.04
PCDH1-201ENST00000287008 UTP14AQ9BVJ6 771 aaKnown RBP21.57■■□□□ 1.04
PCDH1-201ENST00000287008 MCM4P33991 863 aa21.57■■□□□ 1.04
PCDH1-201ENST00000287008 GUCY1B3Q02153 619 aa21.57■■□□□ 1.04
PCDH1-201ENST00000287008 MAP3K11Q16584 847 aa21.57■■□□□ 1.04
PCDH1-201ENST00000287008 BTG4Q9NY30 223 aa21.57■■□□□ 1.04
PCDH1-201ENST00000287008 IARSP41252 1262 aaKnown RBP21.56■■□□□ 1.04
PCDH1-201ENST00000287008 HDAC9Q9UKV0 1011 aa21.56■■□□□ 1.04
PCDH1-201ENST00000287008 TRPM2O94759 1503 aa21.56■■□□□ 1.04
PCDH1-201ENST00000287008 IP6K1Q92551 441 aa21.56■■□□□ 1.04
PCDH1-201ENST00000287008 STX8Q9UNK0 236 aa21.56■■□□□ 1.04
PCDH1-201ENST00000287008 KAT14Q9H8E8 782 aa21.56■■□□□ 1.04
PCDH1-201ENST00000287008 SEPT11Q9NVA2 429 aaKnown RBP21.56■■□□□ 1.04
PCDH1-201ENST00000287008 USP16Q9Y5T5 823 aa21.56■■□□□ 1.04
PCDH1-201ENST00000287008 CCT2P78371 535 aaKnown RBP21.56■■□□□ 1.04
PCDH1-201ENST00000287008 C8orf58Q8NAV2 365 aa21.56■■□□□ 1.04
PCDH1-201ENST00000287008 ZC3H12CQ9C0D7 883 aaKnown RBP21.55■■□□□ 1.04
PCDH1-201ENST00000287008 IQSEC3Q9UPP2 1182 aaPredicted RBP21.55■■□□□ 1.04
PCDH1-201ENST00000287008 DESP17661 470 aa21.55■■□□□ 1.04
PCDH1-201ENST00000287008 NCOA7Q8NI08 942 aa21.55■■□□□ 1.04
PCDH1-201ENST00000287008 ASXL1Q8IXJ9 1541 aa21.55■■□□□ 1.04
PCDH1-201ENST00000287008 MAP3K19Q56UN5 1328 aa21.55■■□□□ 1.04
PCDH1-201ENST00000287008 TRIM21P19474 475 aaKnown RBP21.55■■□□□ 1.04
PCDH1-201ENST00000287008 POLD1P28340 1107 aa21.55■■□□□ 1.04
PCDH1-201ENST00000287008 MICU3Q86XE3 530 aa21.54■■□□□ 1.04
PCDH1-201ENST00000287008 HMG20BQ9P0W2 317 aa21.54■■□□□ 1.04
PCDH1-201ENST00000287008 CYP7A1P22680 504 aa21.54■■□□□ 1.04
PCDH1-201ENST00000287008 VAT1LQ9HCJ6 419 aa21.54■■□□□ 1.04
PCDH1-201ENST00000287008 FILIP1Q7Z7B0 1213 aa21.53■■□□□ 1.04
PCDH1-201ENST00000287008 CDCA7Q9BWT1 371 aaPredicted RBP21.53■■□□□ 1.04
PCDH1-201ENST00000287008 SETQ01105 290 aaPredicted RBP21.53■■□□□ 1.04
PCDH1-201ENST00000287008 KIAA0556O60303 1618 aa21.53■■□□□ 1.04
PCDH1-201ENST00000287008 NEK1Q96PY6 1258 aa21.53■■□□□ 1.04
PCDH1-201ENST00000287008 UHRF1BP1Q6BDS2 1440 aa21.53■■□□□ 1.04
PCDH1-201ENST00000287008 TSHZ3Q63HK5 1081 aa21.52■■□□□ 1.04
PCDH1-201ENST00000287008 NSFL1CQ9UNZ2 370 aaKnown RBP21.52■■□□□ 1.04
PCDH1-201ENST00000287008 PCDH11XQ9BZA7 1347 aa21.52■■□□□ 1.04
PCDH1-201ENST00000287008 PCDH11YQ9BZA8 1340 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms