RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 GRM8O00222 908 aa20.5■□□□□ 0.87
USP4-201ENST00000265560 SUCLG2Q96I99 432 aa20.5■□□□□ 0.87
USP4-201ENST00000265560 METTL22Q9BUU2 404 aaPredicted RBP20.5■□□□□ 0.87
USP4-201ENST00000265560 PLEKHM2Q8IWE5 1019 aa20.49■□□□□ 0.87
USP4-201ENST00000265560 PXDNLA1KZ92 1463 aa20.49■□□□□ 0.87
USP4-201ENST00000265560 KAZALD1Q96I82 304 aa20.49■□□□□ 0.87
USP4-201ENST00000265560 BCL9O00512 1426 aa20.48■□□□□ 0.87
USP4-201ENST00000265560 TNS2Q63HR2 1409 aa20.48■□□□□ 0.87
USP4-201ENST00000265560 KLHDC4Q8TBB5 520 aa20.48■□□□□ 0.87
USP4-201ENST00000265560 BICC1Q9H694 974 aaKnown RBP20.48■□□□□ 0.87
USP4-201ENST00000265560 THRAP3Q9Y2W1 955 aaKnown RBP20.48■□□□□ 0.87
USP4-201ENST00000265560 UBE3BQ7Z3V4 1068 aa20.48■□□□□ 0.87
USP4-201ENST00000265560 ALDH1L1O75891 902 aa20.47■□□□□ 0.87
USP4-201ENST00000265560 GCKRQ14397 625 aa20.47■□□□□ 0.87
USP4-201ENST00000265560 EPHA10Q5JZY3 1008 aa20.47■□□□□ 0.87
USP4-201ENST00000265560 SLC4A3P48751 1232 aa20.46■□□□□ 0.87
USP4-201ENST00000265560 MFAP1P55081 439 aaKnown RBP20.46■□□□□ 0.87
USP4-201ENST00000265560 GSPT1P15170 499 aaKnown RBP20.45■□□□□ 0.86
USP4-201ENST00000265560 PLBD2Q8NHP8 589 aa20.45■□□□□ 0.86
USP4-201ENST00000265560 SSH3Q8TE77 659 aa20.45■□□□□ 0.86
USP4-201ENST00000265560 CDCA7Q9BWT1 371 aaPredicted RBP20.45■□□□□ 0.86
USP4-201ENST00000265560 SIL1Q9H173 461 aa20.45■□□□□ 0.86
USP4-201ENST00000265560 UBR2Q8IWV8 1755 aa20.45■□□□□ 0.86
USP4-201ENST00000265560 A0A087WZG4 1122 aa20.45■□□□□ 0.86
USP4-201ENST00000265560 ZBTB1Q9Y2K1 713 aa20.45■□□□□ 0.86
USP4-201ENST00000265560 LRRCC1Q9C099 1032 aa20.44■□□□□ 0.86
USP4-201ENST00000265560 VPS72Q15906 364 aa20.44■□□□□ 0.86
USP4-201ENST00000265560 BARGINQ6ZT62 677 aa20.44■□□□□ 0.86
USP4-201ENST00000265560 NUTM1Q86Y26 1132 aa20.44■□□□□ 0.86
USP4-201ENST00000265560 FNBP4Q8N3X1 1017 aaPredicted RBP20.44■□□□□ 0.86
USP4-201ENST00000265560 STARD3NLO95772 234 aa20.44■□□□□ 0.86
USP4-201ENST00000265560 OS9Q13438 667 aaPredicted RBP20.44■□□□□ 0.86
USP4-201ENST00000265560 DOT1LQ8TEK3 1739 aa20.43■□□□□ 0.86
USP4-201ENST00000265560 SMIM5Q71RC9 77 aa20.42■□□□□ 0.86
USP4-201ENST00000265560 TBC1D2BQ9UPU7 963 aa20.42■□□□□ 0.86
USP4-201ENST00000265560 ATP6V1AP38606 617 aa20.42■□□□□ 0.86
USP4-201ENST00000265560 AFF2P51816 1311 aa20.42■□□□□ 0.86
USP4-201ENST00000265560 CYP19A1P11511 503 aaPredicted RBP20.42■□□□□ 0.86
USP4-201ENST00000265560 N4BP2Q86UW6 1770 aaPredicted RBP20.41■□□□□ 0.86
USP4-201ENST00000265560 GPTP24298 496 aa20.41■□□□□ 0.86
USP4-201ENST00000265560 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.41■□□□□ 0.86
USP4-201ENST00000265560 WNK3Q9BYP7 1800 aa20.41■□□□□ 0.86
USP4-201ENST00000265560 POLA2Q14181 598 aa20.41■□□□□ 0.86
USP4-201ENST00000265560 PAPPAQ13219 1627 aa20.41■□□□□ 0.86
USP4-201ENST00000265560 IBTKQ9P2D0 1353 aaPredicted RBP20.41■□□□□ 0.86
USP4-201ENST00000265560 IPO9Q96P70 1041 aaKnown RBP20.4■□□□□ 0.86
USP4-201ENST00000265560 CHMP3Q9Y3E7 222 aa20.4■□□□□ 0.86
USP4-201ENST00000265560 HLFQ16534 295 aa20.4■□□□□ 0.86
USP4-201ENST00000265560 SPATA31A6Q5VVP1 1343 aa20.4■□□□□ 0.86
USP4-201ENST00000265560 BMP2KLQ5H9B9 411 aa20.4■□□□□ 0.86
USP4-201ENST00000265560 SYNE4Q8N205 404 aa20.4■□□□□ 0.86
USP4-201ENST00000265560 CCDC85AQ96PX6 553 aaPredicted RBP20.4■□□□□ 0.86
USP4-201ENST00000265560 NWD2Q9ULI1 1742 aa20.39■□□□□ 0.86
USP4-201ENST00000265560 LAMB4A4D0S4 1761 aa20.39■□□□□ 0.86
USP4-201ENST00000265560 RHPN1Q8TCX5 695 aa20.39■□□□□ 0.85
USP4-201ENST00000265560 MAP4K4O95819 1239 aaPredicted RBP20.38■□□□□ 0.85
USP4-201ENST00000265560 PDE1AP54750 535 aa20.38■□□□□ 0.85
USP4-201ENST00000265560 ARFGEF2Q9Y6D5 1785 aa20.38■□□□□ 0.85
USP4-201ENST00000265560 LOC102724428A0A0B4J2F2 783 aa20.38■□□□□ 0.85
USP4-201ENST00000265560 SIK1P57059 783 aa20.38■□□□□ 0.85
USP4-201ENST00000265560 ITPK1Q13572 414 aa20.38■□□□□ 0.85
USP4-201ENST00000265560 TTC22Q5TAA0 569 aa20.38■□□□□ 0.85
USP4-201ENST00000265560 VSIG10Q8N0Z9 540 aa20.38■□□□□ 0.85
USP4-201ENST00000265560 AFDNP55196 1824 aaKnown RBP20.37■□□□□ 0.85
USP4-201ENST00000265560 TBC1D9Q6ZT07 1266 aa20.37■□□□□ 0.85
USP4-201ENST00000265560 TEX13AQ9BXU3 409 aaPredicted RBP20.37■□□□□ 0.85
USP4-201ENST00000265560 ERBB4Q15303 1308 aa20.37■□□□□ 0.85
USP4-201ENST00000265560 FAM177BA6PVY3 158 aa20.36■□□□□ 0.85
USP4-201ENST00000265560 SDSP20132 328 aa20.36■□□□□ 0.85
USP4-201ENST00000265560 GJD4Q96KN9 370 aaPredicted RBP20.36■□□□□ 0.85
USP4-201ENST00000265560 CWC25Q9NXE8 425 aaPredicted RBP20.36■□□□□ 0.85
USP4-201ENST00000265560 KIF6Q6ZMV9 814 aa20.36■□□□□ 0.85
USP4-201ENST00000265560 FAM89AQ96GI7 184 aa20.36■□□□□ 0.85
USP4-201ENST00000265560 UTYO14607 1347 aa20.35■□□□□ 0.85
USP4-201ENST00000265560 LMBR1LQ6UX01 489 aa20.35■□□□□ 0.85
USP4-201ENST00000265560 MX1P20591 662 aa20.35■□□□□ 0.85
USP4-201ENST00000265560 PALLDQ8WX93 1383 aa20.34■□□□□ 0.85
USP4-201ENST00000265560 CRKLP46109 303 aaKnown RBP20.33■□□□□ 0.85
USP4-201ENST00000265560 MTX1Q13505 466 aa20.33■□□□□ 0.85
USP4-201ENST00000265560 RILPL2Q969X0 211 aa20.33■□□□□ 0.85
USP4-201ENST00000265560 UPF2Q9HAU5 1272 aaKnown RBP20.33■□□□□ 0.85
USP4-201ENST00000265560 TRIM6-TRIM34B2RNG4 842 aa20.33■□□□□ 0.84
USP4-201ENST00000265560 TCIRG1Q13488 830 aa20.32■□□□□ 0.84
USP4-201ENST00000265560 QTRT2Q9H974 415 aaKnown RBP20.32■□□□□ 0.84
USP4-201ENST00000265560 CASP7P55210 303 aa20.32■□□□□ 0.84
USP4-201ENST00000265560 DZIP3Q86Y13 1208 aaKnown RBP20.32■□□□□ 0.84
USP4-201ENST00000265560 KIF1BPQ96EK5 621 aa20.32■□□□□ 0.84
USP4-201ENST00000265560 SASH1O94885 1247 aa20.31■□□□□ 0.84
USP4-201ENST00000265560 INTS5Q6P9B9 1019 aaKnown RBP20.31■□□□□ 0.84
USP4-201ENST00000265560 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.31■□□□□ 0.84
USP4-201ENST00000265560 ZNF594Q96JF6 807 aaPredicted RBP20.31■□□□□ 0.84
USP4-201ENST00000265560 CCDC8Q9H0W5 538 aaPredicted RBP20.31■□□□□ 0.84
USP4-201ENST00000265560 G3BP1Q13283 466 aaKnown RBP eCLIP20.31■□□□□ 0.84
USP4-201ENST00000265560 GOLGB1Q14789 3259 aaKnown RBP20.3■□□□□ 0.84
USP4-201ENST00000265560 H7C1W4 665 aa20.3■□□□□ 0.84
USP4-201ENST00000265560 SEPT12Q8IYM1 358 aa20.3■□□□□ 0.84
USP4-201ENST00000265560 MAP3K15Q6ZN16 1313 aa20.3■□□□□ 0.84
USP4-201ENST00000265560 C22orf23Q9BZE7 217 aa20.3■□□□□ 0.84
USP4-201ENST00000265560 SALL3Q9BXA9 1300 aa20.3■□□□□ 0.84
USP4-201ENST00000265560 MYH14Q7Z406 1995 aaKnown RBP20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms