RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 TNNT3P45378 269 aaPredicted RBP5.04□□□□□ -1.6
VPS13C-202ENST00000261517 USP5P45974 858 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 FAM135BQ49AJ0 1406 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 CCDC66A2RUB6 948 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 CCDC150Q8NCX0 1101 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 PDRG1Q9NUG6 133 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 RMND1Q9NWS8 449 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 EXOC5O00471 708 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 PCDH11XQ9BZA7 1347 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 PCDH11YQ9BZA8 1340 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 CCDC152Q4G0S7 254 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.03□□□□□ -1.6
VPS13C-202ENST00000261517 NUTM2FA1L443 756 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 ST5P78524 1137 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 MAP3K5Q99683 1374 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 APBB1IPQ7Z5R6 666 aaPredicted RBP5.03□□□□□ -1.6
VPS13C-202ENST00000261517 ANKRD24Q8TF21 1146 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 FEZ1Q99689 392 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 ANO10Q9NW15 660 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 FBXO3Q9UK99 471 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 CEP152O94986 1710 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 IFI16Q16666 785 aaKnown RBP5.03□□□□□ -1.6
VPS13C-202ENST00000261517 CCDC148Q8NFR7 591 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 GOLGA6L7A0A1B0GV03 622 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 BCL2L13Q9BXK5 485 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 FAM107BQ9H098 131 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 KCNG1Q9UIX4 513 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 PRDM15P57071 1507 aaPredicted RBP5.03□□□□□ -1.6
VPS13C-202ENST00000261517 KIAA0232Q92628 1395 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 ELL2O00472 640 aaPredicted RBP5.03□□□□□ -1.6
VPS13C-202ENST00000261517 TDO2P48775 406 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 JAKMIP3Q5VZ66 844 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 ANKRD2Q9GZV1 360 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 TNMDQ9H2S6 317 aa5.03□□□□□ -1.6
VPS13C-202ENST00000261517 BAG4O95429 457 aaKnown RBP5.03□□□□□ -1.6
VPS13C-202ENST00000261517 NEURL4Q96JN8 1562 aa5.03□□□□□ -1.61
VPS13C-202ENST00000261517 ZSCAN12O43309 604 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 LARP1BQ659C4 914 aaKnown RBP5.02□□□□□ -1.61
VPS13C-202ENST00000261517 IQCDQ96DY2 449 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 ECHDC1Q9NTX5 307 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 ANKARQ7Z5J8 1434 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 HLA-DOAP06340 250 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 CATIPQ7Z7H3 387 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 CTCFLQ8NI51 663 aaPredicted RBP5.02□□□□□ -1.61
VPS13C-202ENST00000261517 KRT18P05783 430 aaKnown RBP5.02□□□□□ -1.61
VPS13C-202ENST00000261517 CALRP27797 417 aaKnown RBP5.02□□□□□ -1.61
VPS13C-202ENST00000261517 FERMT1Q9BQL6 677 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 RTL9Q8NET4 1388 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 RPGRQ92834 1020 aaKnown RBP5.02□□□□□ -1.61
VPS13C-202ENST00000261517 LRP2BPQ9P2M1 347 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 METTL24Q5JXM2 366 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 CCDC183Q5T5S1 534 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 GZF1Q9H116 711 aaPredicted RBP5.02□□□□□ -1.61
VPS13C-202ENST00000261517 LIMCH1Q9UPQ0 1083 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 A2ML1A8K2U0 1454 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 HMGB1P1B2RPK0 211 aaPredicted RBP5.02□□□□□ -1.61
VPS13C-202ENST00000261517 SPRYD3Q8NCJ5 442 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 CCDC112Q8NEF3 446 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 MAST3O60307 1309 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 PARP10Q53GL7 1025 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 ERMNQ8TAM6 284 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 TTC12Q9H892 705 aaPredicted RBP5.02□□□□□ -1.61
VPS13C-202ENST00000261517 CALML3P27482 149 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 PRPHP41219 470 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 DCAF5Q96JK2 942 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 RBM42Q9BTD8 480 aaKnown RBP5.02□□□□□ -1.61
VPS13C-202ENST00000261517 AATKQ6ZMQ8 1374 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 TULP1O00294 542 aaPredicted RBP5.02□□□□□ -1.61
VPS13C-202ENST00000261517 NDC80O14777 642 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 TRAK2O60296 914 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 IL15P40933 162 aaPredicted RBP5.02□□□□□ -1.61
VPS13C-202ENST00000261517 SPAG1Q07617 926 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 AIMP1Q12904 312 aaKnown RBP5.02□□□□□ -1.61
VPS13C-202ENST00000261517 KRT28Q7Z3Y7 464 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 PHF23Q9BUL5 403 aaPredicted RBP5.02□□□□□ -1.61
VPS13C-202ENST00000261517 TRIM5Q9C035 493 aa5.02□□□□□ -1.61
VPS13C-202ENST00000261517 ABCA9Q8IUA7 1624 aa5.01□□□□□ -1.61
VPS13C-202ENST00000261517 IKQ13123 557 aaPredicted RBP5.01□□□□□ -1.61
VPS13C-202ENST00000261517 CEP128Q6ZU80 1094 aa5.01□□□□□ -1.61
VPS13C-202ENST00000261517 CTAGE1Q96RT6 745 aa5.01□□□□□ -1.61
VPS13C-202ENST00000261517 PLVAPQ9BX97 442 aa5.01□□□□□ -1.61
VPS13C-202ENST00000261517 SNX21Q969T3 373 aa5.01□□□□□ -1.61
VPS13C-202ENST00000261517 SPATA32Q96LK8 384 aa5.01□□□□□ -1.61
VPS13C-202ENST00000261517 SSH2Q76I76 1423 aa5.01□□□□□ -1.61
VPS13C-202ENST00000261517 CLUL1Q15846 466 aa5.01□□□□□ -1.61
VPS13C-202ENST00000261517 MAP3K11Q16584 847 aa5.01□□□□□ -1.61
VPS13C-202ENST00000261517 NUP62CLQ9H1M0 184 aa5.01□□□□□ -1.61
VPS13C-202ENST00000261517 LRRC59Q96AG4 307 aaKnown RBP5.01□□□□□ -1.61
VPS13C-202ENST00000261517 CRNKL1Q9BZJ0 848 aaKnown RBP5.01□□□□□ -1.61
VPS13C-202ENST00000261517 NAPBQ9H115 298 aa5.01□□□□□ -1.61
VPS13C-202ENST00000261517 EZRP15311 586 aaKnown RBP5.01□□□□□ -1.61
VPS13C-202ENST00000261517 LRRC45Q96CN5 670 aa5.01□□□□□ -1.61
VPS13C-202ENST00000261517 CACNA1FO60840 1977 aa5.01□□□□□ -1.61
VPS13C-202ENST00000261517 PLIN1O60240 522 aa5.01□□□□□ -1.61
VPS13C-202ENST00000261517 INTS4Q96HW7 963 aaKnown RBP5.01□□□□□ -1.61
VPS13C-202ENST00000261517 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.01□□□□□ -1.611e-7■■■■□ 22
VPS13C-202ENST00000261517 BLMP54132 1417 aaPredicted RBP5.01□□□□□ -1.61
VPS13C-202ENST00000261517 TRPM1Q7Z4N2 1603 aa5.01□□□□□ -1.61
VPS13C-202ENST00000261517 FLIIQ13045 1269 aa5.01□□□□□ -1.61
VPS13C-202ENST00000261517 SH2D4AQ9H788 454 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms