RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 CHPF2Q9P2E5 772 aa16.25■□□□□ 0.19
LDLR-201ENST00000252444 ITSN1Q15811 1721 aa16.25■□□□□ 0.19
LDLR-201ENST00000252444 NBPF6Q5VWK0 638 aa16.25■□□□□ 0.19
LDLR-201ENST00000252444 NBPF5PQ86XG9 351 aaPredicted RBP16.25■□□□□ 0.19
LDLR-201ENST00000252444 XAGE3Q8WTP9 111 aa16.25■□□□□ 0.19
LDLR-201ENST00000252444 NBPF4Q96M43 638 aa16.25■□□□□ 0.19
LDLR-201ENST00000252444 NLRP3Q96P20 1036 aa16.25■□□□□ 0.19
LDLR-201ENST00000252444 ANKRD20A12PQ8NF67 263 aa16.24■□□□□ 0.19
LDLR-201ENST00000252444 AIDAQ96BJ3 306 aa16.24■□□□□ 0.19
LDLR-201ENST00000252444 LRP2BPQ9P2M1 347 aa16.24■□□□□ 0.19
LDLR-201ENST00000252444 TPM3P06753 285 aa16.24■□□□□ 0.19
LDLR-201ENST00000252444 BRPF1P55201 1214 aaPredicted RBP16.24■□□□□ 0.19
LDLR-201ENST00000252444 TRAF1Q13077 416 aa16.24■□□□□ 0.19
LDLR-201ENST00000252444 ANKRD18AQ8IVF6 992 aa16.24■□□□□ 0.19
LDLR-201ENST00000252444 USP21Q9UK80 565 aa16.24■□□□□ 0.19
LDLR-201ENST00000252444 POLD1P28340 1107 aa16.24■□□□□ 0.19
LDLR-201ENST00000252444 SLKQ9H2G2 1235 aaPredicted RBP16.24■□□□□ 0.19
LDLR-201ENST00000252444 RAD50Q92878 1312 aa16.23■□□□□ 0.19
LDLR-201ENST00000252444 CCDC196A0A1B0GTZ2 297 aa16.23■□□□□ 0.19
LDLR-201ENST00000252444 EYA3Q99504 573 aa16.23■□□□□ 0.19
LDLR-201ENST00000252444 SH2B1Q9NRF2 756 aaPredicted RBP16.23■□□□□ 0.19
LDLR-201ENST00000252444 DZIP3Q86Y13 1208 aaKnown RBP16.23■□□□□ 0.19
LDLR-201ENST00000252444 RAI14Q9P0K7 980 aa16.23■□□□□ 0.19
LDLR-201ENST00000252444 FAM177BA6PVY3 158 aa16.23■□□□□ 0.19
LDLR-201ENST00000252444 BAG3O95817 575 aa16.23■□□□□ 0.19
LDLR-201ENST00000252444 MBD3O95983 291 aa16.23■□□□□ 0.19
LDLR-201ENST00000252444 BCL11BQ9C0K0 894 aaPredicted RBP16.22■□□□□ 0.19
LDLR-201ENST00000252444 STK32BQ9NY57 414 aa16.22■□□□□ 0.19
LDLR-201ENST00000252444 SETD1BQ9UPS6 1966 aaKnown RBP16.22■□□□□ 0.19
LDLR-201ENST00000252444 CCDC69A6NI79 296 aa16.22■□□□□ 0.19
LDLR-201ENST00000252444 BLOC1S2Q6QNY1 142 aa16.22■□□□□ 0.19
LDLR-201ENST00000252444 SIL1Q9H173 461 aa16.22■□□□□ 0.19
LDLR-201ENST00000252444 FBXO3Q9UK99 471 aa16.22■□□□□ 0.19
LDLR-201ENST00000252444 CPSF1Q10570 1443 aaKnown RBP16.22■□□□□ 0.19
LDLR-201ENST00000252444 GOLGA6L3A6NEY3 463 aa16.21■□□□□ 0.19
LDLR-201ENST00000252444 FAM83GA6ND36 823 aa16.21■□□□□ 0.19
LDLR-201ENST00000252444 EPB41L2O43491 1005 aaKnown RBP16.21■□□□□ 0.19
LDLR-201ENST00000252444 PHKG2P15735 406 aa16.21■□□□□ 0.19
LDLR-201ENST00000252444 METTL22Q9BUU2 404 aaPredicted RBP16.21■□□□□ 0.19
LDLR-201ENST00000252444 ADAMTS13Q76LX8 1427 aa16.21■□□□□ 0.19
LDLR-201ENST00000252444 DRC7Q8IY82 874 aa16.21■□□□□ 0.19
LDLR-201ENST00000252444 PARP3Q9Y6F1 533 aa16.21■□□□□ 0.19
LDLR-201ENST00000252444 CCDC87Q9NVE4 849 aa16.21■□□□□ 0.19
LDLR-201ENST00000252444 CCDC73Q6ZRK6 1079 aa16.21■□□□□ 0.18
LDLR-201ENST00000252444 COPS6Q7L5N1 327 aa16.21■□□□□ 0.18
LDLR-201ENST00000252444 BACH2Q9BYV9 841 aa16.21■□□□□ 0.18
LDLR-201ENST00000252444 TPM1P09493 284 aa16.2■□□□□ 0.18
LDLR-201ENST00000252444 NFATC2IPQ8NCF5 419 aa16.2■□□□□ 0.18
LDLR-201ENST00000252444 RBM17Q96I25 401 aaKnown RBP16.2■□□□□ 0.18
LDLR-201ENST00000252444 ARHGAP23Q9P227 1491 aa16.2■□□□□ 0.18
LDLR-201ENST00000252444 GNAT2P19087 354 aa16.2■□□□□ 0.18
LDLR-201ENST00000252444 PIP4K2AP48426 406 aaPredicted RBP16.2■□□□□ 0.18
LDLR-201ENST00000252444 TDO2P48775 406 aa16.2■□□□□ 0.18
LDLR-201ENST00000252444 PLCG2P16885 1265 aa16.2■□□□□ 0.18
LDLR-201ENST00000252444 NUCB1Q02818 461 aa16.2■□□□□ 0.18
LDLR-201ENST00000252444 ZNF804AQ7Z570 1209 aa16.2■□□□□ 0.18
LDLR-201ENST00000252444 ANKIB1Q9P2G1 1089 aa16.2■□□□□ 0.18
LDLR-201ENST00000252444 NOL7Q9UMY1 257 aaKnown RBP16.2■□□□□ 0.18
LDLR-201ENST00000252444 C1orf167Q5SNV9 1468 aa16.2■□□□□ 0.18
LDLR-201ENST00000252444 TRAPPC3LQ5T215 181 aa16.2■□□□□ 0.18
LDLR-201ENST00000252444 CABLES1Q8TDN4 633 aa16.2■□□□□ 0.18
LDLR-201ENST00000252444 UBAC1Q9BSL1 405 aa16.2■□□□□ 0.18
LDLR-201ENST00000252444 ZBTB3Q9H5J0 574 aa16.2■□□□□ 0.18
LDLR-201ENST00000252444 WDR33Q9C0J8 1336 aaKnown RBP16.19■□□□□ 0.18
LDLR-201ENST00000252444 PRR36Q9H6K5 1346 aa16.19■□□□□ 0.18
LDLR-201ENST00000252444 SPATA31A6Q5VVP1 1343 aa16.19■□□□□ 0.18
LDLR-201ENST00000252444 MSNP26038 577 aaKnown RBP16.19■□□□□ 0.18
LDLR-201ENST00000252444 TXLNAP40222 546 aa16.19■□□□□ 0.18
LDLR-201ENST00000252444 LDHAL6AQ6ZMR3 332 aa16.19■□□□□ 0.18
LDLR-201ENST00000252444 DZIP1Q86YF9 867 aaKnown RBP16.19■□□□□ 0.18
LDLR-201ENST00000252444 C8orf58Q8NAV2 365 aa16.19■□□□□ 0.18
LDLR-201ENST00000252444 WDHD1O75717 1129 aaPredicted RBP16.18■□□□□ 0.18
LDLR-201ENST00000252444 MCTP1Q6DN14 999 aa16.18■□□□□ 0.18
LDLR-201ENST00000252444 SPRYD3Q8NCJ5 442 aa16.18■□□□□ 0.18
LDLR-201ENST00000252444 SUPT20HQ8NEM7 779 aa16.18■□□□□ 0.18
LDLR-201ENST00000252444 RNF123Q5XPI4 1314 aa16.18■□□□□ 0.18
LDLR-201ENST00000252444 FKBP4Q02790 459 aaKnown RBP eCLIP16.18■□□□□ 0.18
LDLR-201ENST00000252444 KLHL34Q8N239 644 aa16.18■□□□□ 0.18
LDLR-201ENST00000252444 MROH1Q8NDA8 1641 aa16.18■□□□□ 0.18
LDLR-201ENST00000252444 OVOS2A0A0G2JMS6 1433 aa16.18■□□□□ 0.18
LDLR-201ENST00000252444 OVOS2A0A0J9YW53 1432 aa16.18■□□□□ 0.18
LDLR-201ENST00000252444 OVOS2Q6IE36 1432 aa16.18■□□□□ 0.18
LDLR-201ENST00000252444 VPS53Q5VIR6 699 aa16.18■□□□□ 0.18
LDLR-201ENST00000252444 BICDL1Q6ZP65 573 aa16.18■□□□□ 0.18
LDLR-201ENST00000252444 VSIG10Q8N0Z9 540 aa16.17■□□□□ 0.18
LDLR-201ENST00000252444 HDAC9Q9UKV0 1011 aa16.17■□□□□ 0.18
LDLR-201ENST00000252444 K7ELQ4 463 aaPredicted RBP16.17■□□□□ 0.18
LDLR-201ENST00000252444 TICAM2Q86XR7 235 aa16.17■□□□□ 0.18
LDLR-201ENST00000252444 ANAPC15P60006 121 aa16.17■□□□□ 0.18
LDLR-201ENST00000252444 UBE3BQ7Z3V4 1068 aa16.17■□□□□ 0.18
LDLR-201ENST00000252444 PHACTR3Q96KR7 559 aa16.17■□□□□ 0.18
LDLR-201ENST00000252444 KDRP35968 1356 aa16.17■□□□□ 0.18
LDLR-201ENST00000252444 JCADQ9P266 1359 aa16.17■□□□□ 0.18
LDLR-201ENST00000252444 BRINP3Q76B58 766 aa16.17■□□□□ 0.18
LDLR-201ENST00000252444 NOL8Q76FK4 1167 aaKnown RBP16.16■□□□□ 0.18
LDLR-201ENST00000252444 TMC4Q7Z404 712 aa16.16■□□□□ 0.18
LDLR-201ENST00000252444 NAT10Q9H0A0 1025 aaKnown RBP16.16■□□□□ 0.18
LDLR-201ENST00000252444 TRIM35Q9UPQ4 493 aa16.16■□□□□ 0.18
LDLR-201ENST00000252444 MAST3O60307 1309 aa16.16■□□□□ 0.18
LDLR-201ENST00000252444 ERBB3P21860 1342 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms