RNA–Protein interactions for RNA: ENST00000216414.12

CDKN3-201, Transcript of cyclin dependent kinase inhibitor 3, humanhuman

TSL 1 (best)

Gene CDKN3, Length 373 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN3-201ENST00000216414 SYT9Q86SS6 491 aa6.62□□□□□ -1.35
CDKN3-201ENST00000216414 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.62□□□□□ -1.35
CDKN3-201ENST00000216414 ELOA3Q8NG57 546 aa6.62□□□□□ -1.35
CDKN3-201ENST00000216414 L3MBTL2Q969R5 705 aa6.62□□□□□ -1.35
CDKN3-201ENST00000216414 TPSG1Q9NRR2 321 aa6.62□□□□□ -1.35
CDKN3-201ENST00000216414 ZNF358Q9NW07 568 aa6.62□□□□□ -1.35
CDKN3-201ENST00000216414 EFSO43281 561 aa6.61□□□□□ -1.35
CDKN3-201ENST00000216414 FOXD4L6Q3SYB3 417 aaPredicted RBP6.61□□□□□ -1.35
CDKN3-201ENST00000216414 TBCELQ5QJ74 424 aa6.61□□□□□ -1.35
CDKN3-201ENST00000216414 FOXD4L3Q6VB84 417 aaPredicted RBP6.61□□□□□ -1.35
CDKN3-201ENST00000216414 ZDHHC1Q8WTX9 485 aa6.61□□□□□ -1.35
CDKN3-201ENST00000216414 SCHIP1Q9P0W5 487 aaPredicted RBP6.61□□□□□ -1.35
CDKN3-201ENST00000216414 ZNF232Q9UNY5 417 aa6.61□□□□□ -1.35
CDKN3-201ENST00000216414 NOS2P35228 1153 aa6.6□□□□□ -1.35
CDKN3-201ENST00000216414 NCOA4Q13772 614 aa6.6□□□□□ -1.35
CDKN3-201ENST00000216414 MCM6Q14566 821 aa6.6□□□□□ -1.35
CDKN3-201ENST00000216414 NACC1Q96RE7 527 aa6.6□□□□□ -1.35
CDKN3-201ENST00000216414 TEAD4Q15561 434 aa6.59□□□□□ -1.35
CDKN3-201ENST00000216414 PRSS36Q5K4E3 855 aa6.59□□□□□ -1.35
CDKN3-201ENST00000216414 SLC9A9Q8IVB4 645 aa6.59□□□□□ -1.35
CDKN3-201ENST00000216414 FAM229AH3BQW9 127 aa6.58□□□□□ -1.36
CDKN3-201ENST00000216414 EML1O00423 815 aa6.58□□□□□ -1.36
CDKN3-201ENST00000216414 LZTS3O60299 673 aaPredicted RBP6.58□□□□□ -1.36
CDKN3-201ENST00000216414 SFSWAPQ12872 951 aaKnown RBP6.58□□□□□ -1.36
CDKN3-201ENST00000216414 TNS4Q8IZW8 715 aa6.58□□□□□ -1.36
CDKN3-201ENST00000216414 DEPDC4Q8N2C3 294 aa6.58□□□□□ -1.36
CDKN3-201ENST00000216414 RHPN1Q8TCX5 695 aa6.58□□□□□ -1.36
CDKN3-201ENST00000216414 COG6Q9Y2V7 657 aa6.58□□□□□ -1.36
CDKN3-201ENST00000216414 SERTM1A2A2V5 107 aa6.57□□□□□ -1.36
CDKN3-201ENST00000216414 M0R082 166 aa6.57□□□□□ -1.36
CDKN3-201ENST00000216414 SIN3BO75182 1162 aa6.57□□□□□ -1.36
CDKN3-201ENST00000216414 TRIM28Q13263 835 aaKnown RBP6.57□□□□□ -1.36
CDKN3-201ENST00000216414 SH3PXD2AQ5TCZ1 1133 aa6.57□□□□□ -1.36
CDKN3-201ENST00000216414 RAB44Q7Z6P3 723 aaPredicted RBP6.57□□□□□ -1.36
CDKN3-201ENST00000216414 ZNF417Q8TAU3 575 aa6.57□□□□□ -1.36
CDKN3-201ENST00000216414 ZNF587Q96SQ5 575 aaPredicted RBP6.57□□□□□ -1.36
CDKN3-201ENST00000216414 SLC30A3Q99726 388 aa6.57□□□□□ -1.36
CDKN3-201ENST00000216414 ALG2Q9H553 416 aa6.57□□□□□ -1.36
CDKN3-201ENST00000216414 GOLGA2P5Q9HBQ8 144 aa6.57□□□□□ -1.36
CDKN3-201ENST00000216414 USP17L5A8MUK1 530 aa6.56□□□□□ -1.36
CDKN3-201ENST00000216414 EPHA4P54764 986 aa6.56□□□□□ -1.36
CDKN3-201ENST00000216414 NEUROD1Q13562 356 aa6.56□□□□□ -1.36
CDKN3-201ENST00000216414 C8orf86Q6ZUL3 223 aa6.56□□□□□ -1.36
CDKN3-201ENST00000216414 WWC1Q8IX03 1113 aa6.56□□□□□ -1.36
CDKN3-201ENST00000216414 ADARB2-AS1A8MUL3 147 aa6.55□□□□□ -1.36
CDKN3-201ENST00000216414 SPEM2Q0P670 501 aa6.55□□□□□ -1.36
CDKN3-201ENST00000216414 LRP8Q14114 963 aa6.55□□□□□ -1.36
CDKN3-201ENST00000216414 NFATC2IPQ8NCF5 419 aa6.55□□□□□ -1.36
CDKN3-201ENST00000216414 CHMP3Q9Y3E7 222 aa6.55□□□□□ -1.36
CDKN3-201ENST00000216414 GPC6Q9Y625 555 aaPredicted RBP6.55□□□□□ -1.36
CDKN3-201ENST00000216414 ALBP02768 609 aa6.54□□□□□ -1.36
CDKN3-201ENST00000216414 ADH7P40394 386 aa6.54□□□□□ -1.36
CDKN3-201ENST00000216414 TRIM50Q86XT4 487 aa6.54□□□□□ -1.36
CDKN3-201ENST00000216414 TPCN2Q8NHX9 752 aa6.54□□□□□ -1.36
CDKN3-201ENST00000216414 TNFRSF25Q93038 417 aa6.54□□□□□ -1.36
CDKN3-201ENST00000216414 HSH2DQ96JZ2 352 aa6.54□□□□□ -1.36
CDKN3-201ENST00000216414 CEP63Q96MT8 703 aa6.54□□□□□ -1.36
CDKN3-201ENST00000216414 MDFIQ99750 246 aa6.54□□□□□ -1.36
CDKN3-201ENST00000216414 KRTAP9-9Q9BYP9 154 aa6.54□□□□□ -1.36
CDKN3-201ENST00000216414 KRTAP9-4Q9BYQ2 154 aa6.54□□□□□ -1.36
CDKN3-201ENST00000216414 BRD7Q9NPI1 651 aa6.54□□□□□ -1.36
CDKN3-201ENST00000216414 HCN4Q9Y3Q4 1203 aa6.54□□□□□ -1.36
CDKN3-201ENST00000216414 PSMA6P60900 246 aaKnown RBP6.53□□□□□ -1.36
CDKN3-201ENST00000216414 MICALL1Q8N3F8 863 aa6.53□□□□□ -1.36
CDKN3-201ENST00000216414 TSPAN10Q9H1Z9 355 aaPredicted RBP6.53□□□□□ -1.36
CDKN3-201ENST00000216414 KIAA1024Q9UPX6 916 aa6.53□□□□□ -1.36
CDKN3-201ENST00000216414 STARD13Q9Y3M8 1113 aa6.53□□□□□ -1.36
CDKN3-201ENST00000216414 SFI1A8K8P3 1242 aa6.52□□□□□ -1.37
CDKN3-201ENST00000216414 HYAL3O43820 417 aaPredicted RBP6.52□□□□□ -1.37
CDKN3-201ENST00000216414 H2AFB1P0C5Y9 115 aa6.52□□□□□ -1.37
CDKN3-201ENST00000216414 H2AFB2P0C5Z0 115 aa6.52□□□□□ -1.37
CDKN3-201ENST00000216414 ATP1A2P50993 1020 aa6.52□□□□□ -1.37
CDKN3-201ENST00000216414 TBC1D8BQ0IIM8 1120 aa6.52□□□□□ -1.37
CDKN3-201ENST00000216414 GRIK4Q16099 956 aa6.52□□□□□ -1.37
CDKN3-201ENST00000216414 CCDC102BQ68D86 513 aa6.52□□□□□ -1.37
CDKN3-201ENST00000216414 C7orf43Q8WVR3 580 aa6.52□□□□□ -1.37
CDKN3-201ENST00000216414 POM121Q96HA1 1249 aa6.52□□□□□ -1.37
CDKN3-201ENST00000216414 PHACTR1Q9C0D0 580 aa6.52□□□□□ -1.37
CDKN3-201ENST00000216414 ANKIB1Q9P2G1 1089 aa6.52□□□□□ -1.37
CDKN3-201ENST00000216414 C9orf172C9J069 976 aa6.51□□□□□ -1.37
CDKN3-201ENST00000216414 NID1P14543 1247 aa6.51□□□□□ -1.37
CDKN3-201ENST00000216414 COL9A3Q14050 684 aaPredicted RBP6.51□□□□□ -1.37
CDKN3-201ENST00000216414 TRAPPC3LQ5T215 181 aa6.51□□□□□ -1.37
CDKN3-201ENST00000216414 BHMTQ93088 406 aa6.51□□□□□ -1.37
CDKN3-201ENST00000216414 KCNH4Q9UQ05 1017 aa6.51□□□□□ -1.37
CDKN3-201ENST00000216414 USP17L3A6NCW0 530 aa6.5□□□□□ -1.37
CDKN3-201ENST00000216414 USP17L4A6NCW7 530 aa6.5□□□□□ -1.37
CDKN3-201ENST00000216414 ZBTB7BO15156 539 aaPredicted RBP6.5□□□□□ -1.37
CDKN3-201ENST00000216414 RAD21O60216 631 aa6.5□□□□□ -1.37
CDKN3-201ENST00000216414 CLDN10P78369 228 aa6.5□□□□□ -1.37
CDKN3-201ENST00000216414 C1orf53Q5VUE5 145 aa6.5□□□□□ -1.37
CDKN3-201ENST00000216414 USP17L2Q6R6M4 530 aa6.5□□□□□ -1.37
CDKN3-201ENST00000216414 USP17L1Q7RTZ2 530 aa6.5□□□□□ -1.37
CDKN3-201ENST00000216414 ZNF280CQ8ND82 737 aa6.5□□□□□ -1.37
CDKN3-201ENST00000216414 SUSD3Q96L08 255 aa6.5□□□□□ -1.37
CDKN3-201ENST00000216414 UBE2OQ9C0C9 1292 aaKnown RBP6.5□□□□□ -1.37
CDKN3-201ENST00000216414 IGFLR1Q9H665 355 aa6.5□□□□□ -1.37
CDKN3-201ENST00000216414 PRDM6Q9NQX0 595 aa6.5□□□□□ -1.37
CDKN3-201ENST00000216414 POM121CA8CG34 1229 aa6.49□□□□□ -1.37
CDKN3-201ENST00000216414 TYRO3Q06418 890 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms