RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Exoc5Q3TPX4 708 aa18.22■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Dhx8A2A4P0 1244 aaKnown RBP18.22■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Cfap58B2RW38 873 aa18.22■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Zkscan16A2ALW2 728 aa18.22■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Odf2A3KGV1 830 aaKnown RBP18.22■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 ThemisQ8BGW0 636 aa18.22■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Cct2P80314 535 aaKnown RBP18.22■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Dusp9Q7TNL7 452 aa18.22■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Cfap69Q8BH53 942 aa18.22■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Mrvi1Q9WUX5 899 aaKnown RBP18.22■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Prpf4bQ61136 1007 aaKnown RBP18.21■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Kiaa0753Q6A000 959 aa18.21■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Tbc1d7Q9D0K0 293 aa18.21■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Zbtb45Q52KG4 520 aa18.21■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Ddx46Q569Z5 1032 aaKnown RBP18.21■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Ccdc178Q8CDV0 866 aa18.21■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Atf7Q8R0S1 413 aa18.21■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Nsfl1cQ9CZ44 370 aaKnown RBP18.21■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Kif3cO35066 796 aa18.21■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Tm6sf1P58749 370 aa18.21■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Pde4dQ01063 747 aa18.21■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Sugp2Q8CH09 1067 aa18.21■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Gadd45bP22339 160 aa18.2■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Slf2Q6P9P0 1278 aa18.2■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Rbm8a2A0A0N4SUH6 174 aa18.2■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Gigyf1Q99MR1 1044 aaKnown RBP18.2■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Rbm8aQ9CWZ3 174 aa18.2■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Nip7Q9CXK8 180 aaKnown RBP18.2■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Cdkl5Q3UTQ8 938 aa18.2■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Tnni2P13412 182 aa18.19■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Ccnl1Q52KE7 532 aaKnown RBP18.19■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Necab1Q8BG18 352 aa18.19■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Klf15Q9EPW2 415 aa18.18■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Igflr1Q3U4N7 345 aa18.18■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Pdcl2Q78Y63 240 aa18.18■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Tmco3Q8BH01 678 aa18.18■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Cep55Q8BT07 462 aa18.18■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Bicc1Q99MQ1 977 aaKnown RBP18.18■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Wdr33Q8K4P0 1330 aaKnown RBP18.18■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Slain2Q8CI08 581 aa18.18■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Rbbp8nlA2ABX0 614 aa18.17■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Rufy1Q8BIJ7 712 aa18.17■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Zbtb3Q91X45 518 aa18.17■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Cyp27a1Q9DBG1 533 aa18.17■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Abcc3B2RX12 1523 aa18.17■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Il4rP16382 810 aa18.17■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Cyp7a1Q64505 503 aa18.17■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Pdzrn3Q69ZS0 1063 aa18.17■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Sel1lQ9Z2G6 790 aa18.17■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Uggt1Q6P5E4 1551 aa18.16■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Zscan20B2KFW1 1030 aa18.16■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Hand2Q61039 217 aa18.16■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Prune1Q8BIW1 454 aa18.16■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Tpx2A2APB8 745 aaKnown RBP18.16■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Ube2hP62257 183 aa18.16■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Bms1Q6PGF5 1284 aaKnown RBP18.16■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 NapbP28663 298 aa18.15■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Chl1P70232 1209 aa18.15■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Kdm4cQ8VCD7 1054 aa18.15■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Mlh1Q9JK91 760 aa18.15■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Adamts13Q769J6 1426 aa18.15■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 CrklP47941 303 aa18.15■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Gse1Q3U3C9 1213 aa18.15■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Limch1Q3UH68 1057 aa18.15■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Ifit1bl2Q3U687 466 aa18.15■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 March6Q6ZQ89 909 aa18.15■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 SfswapQ3USH5 945 aaKnown RBP18.14■□□□□ 0.5
Ccdc88b-201ENSMUST00000113440 Slc39a6Q8C145 765 aa18.14■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Eif2ak4Q9QZ05 1648 aa18.14■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Slc5a4bQ91ZP4 660 aa18.14■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 A0A0U1RNP2 1173 aa18.14■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Prkab2Q6PAM0 271 aa18.14■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 SympkQ80X82 1284 aa18.14■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Frmd3Q8BHD4 595 aa18.14■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Plekhg1F6S200 1446 aa18.14■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Adcy5P84309 1262 aa18.13■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Ccdc158Q8CDI6 1109 aa18.13■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Bloc1s2Q9CWG9 143 aa18.13■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Adgrl1Q80TR1 1466 aa18.13■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Gas2l3Q3UWW6 683 aa18.13■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 SrrtQ99MR6 875 aaKnown RBP18.13■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Znf335A2A5K6 1337 aa18.13■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Mdm2P23804 489 aa18.13■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Tmx3Q8BXZ1 456 aa18.13■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Krt25Q8VCW2 446 aa18.13■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Otud6bQ8K2H2 294 aa18.12■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Igbp1bQ9QZ29 343 aa18.12■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Gm32742A0A1B0GT42 1604 aa18.12■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Atp10aO54827 1508 aa18.12■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Zbtb21E9Q444 1094 aa18.12■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Stat1P42225 749 aa18.12■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Ifit2Q64112 472 aa18.12■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Kdm4aQ8BW72 1064 aa18.12■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Rad17Q6NXW6 688 aa18.12■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Stk36Q69ZM6 1316 aa18.12■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Mctp2Q5RJH2 878 aa18.11■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Znf771Q8BJ90 317 aa18.11■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Dmrtc1Q9D9R7 182 aa18.11■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Hmg20bQ9Z104 317 aa18.11■□□□□ 0.49
Ccdc88b-201ENSMUST00000113440 Dmrt2Q8BG36 561 aa18.11■□□□□ 0.49
Retrieved 100 of 22,080 RNA–protein pairs in 27.9 ms