RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 TAS2R20P59543 309 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 CAMK2BQ13554 666 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 GTDC1Q4AE62 458 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 LIPJQ5W064 366 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 B3GNTL1Q67FW5 361 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 SLC39A4Q6P5W5 647 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 ABHD13Q7L211 337 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 COMTD1Q86VU5 262 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 MARCH2Q9P0N8 246 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 TTC24A2A3L6 582 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ARRDC5A6NEK1 342 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 FARS2O95363 451 aaKnown RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 HEXBP07686 556 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 POU4F3Q15319 338 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF674Q2M3X9 581 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 CNTN4Q8IWV2 1026 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 FRS2Q8WU20 508 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 FOXRED1Q96CU9 486 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 CD180Q99467 661 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ANKRD19PQ9H560 264 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 PLEKHA1Q9HB21 404 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 GBA2Q9HCG7 927 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ACOXLQ9NUZ1 547 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 A0A1W2PS29 197 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 BHLHE40O14503 412 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 PMS2P2O95744 297 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 HLA-DQA2P01906 255 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SSR2P43308 183 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 CLDN20P56880 219 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SLC35A2P78381 396 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 CHST9Q7L1S5 443 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 MRPL10Q7Z7H8 261 aaKnown RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 PDZD3Q86UT5 571 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SCGB1C1Q8TD33 95 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SYT11Q9BT88 431 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 EDEM2Q9BV94 578 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 BEX2Q9BXY8 128 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 GAR1Q9NY12 217 aaKnown RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 BTNL2Q9UIR0 455 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 DIP2CQ9Y2E4 1556 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 CIB4A0PJX0 185 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 A8MXE2 369 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 M0R129 80 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ADAM23O75077 832 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SLC25A12O75746 678 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 IMPA1P29218 277 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 OXTRP30559 389 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SHMT1P34896 483 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 B3GNT8Q7Z7M8 397 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 COMMD2Q86X83 199 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF709Q8N972 641 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 OR4Q3Q8NH05 313 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SLC25A31Q9H0C2 315 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SMPD4Q9NXE4 827 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ASIC5Q9NY37 505 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 C7orf72A4D263 438 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 TLX2O43763 284 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ALDOBP05062 364 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 PGAM2P15259 253 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 RPIAP49247 311 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 IDH3GP51553 393 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 MCCD1P59942 119 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 LARP4Q71RC2 724 aaKnown RBP eCLIP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF627Q7L945 461 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 MTURNQ8N3F0 131 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 OR52J3Q8NH60 311 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SOX17Q9H6I2 414 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 AMBNQ9NP70 447 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM129A0AVI4 362 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 DPM1O60762 260 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 GNRH1P01148 92 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SLC35E2BP0CK96 405 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ACPPP15309 386 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 CCR7P32248 378 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SNRPD2P62316 118 aaKnown RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 TCTE1Q5JU00 501 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ARL9Q6T311 187 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF280BQ86YH2 543 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF527Q8NB42 609 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 OR2L3Q8NG85 312 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 GPR150Q8NGU9 434 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 PMEPA1Q969W9 287 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM175Q9BSA9 504 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 PITHD1Q9GZP4 211 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 OR10A4Q9H209 315 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ZBTB20Q9HC78 741 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ABI2Q9NYB9 513 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SLC6A5Q9Y345 797 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 G3V2L1 256 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ANKRD28O15084 1053 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 LATS1O95835 1130 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 PDYNP01213 254 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SYPP08247 313 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ELK1P19419 428 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 TBPP20226 339 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 HOXD11P31277 338 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 RNF4P78317 190 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 C1orf87Q8N0U7 546 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SPICQ8N5J4 248 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 FAM83FQ8NEG4 500 aaPredicted RBP4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms