RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 GUCY2DQ02846 1103 aa16.99■□□□□ 0.31
CLN3-241ENST00000635861 C2orf54Q08AI8 447 aa16.99■□□□□ 0.31
CLN3-241ENST00000635861 DDX39BQ13838 428 aaKnown RBP16.99■□□□□ 0.31
CLN3-241ENST00000635861 TBCELQ5QJ74 424 aa16.99■□□□□ 0.31
CLN3-241ENST00000635861 ZNF585AQ6P3V2 769 aa16.99■□□□□ 0.31
CLN3-241ENST00000635861 KLC3Q6P597 504 aa16.99■□□□□ 0.31
CLN3-241ENST00000635861 CENPLQ8N0S6 344 aaPredicted RBP16.99■□□□□ 0.31
CLN3-241ENST00000635861 ITGB1BP2Q9UKP3 347 aa16.99■□□□□ 0.31
CLN3-241ENST00000635861 ACAD8Q9UKU7 415 aa16.99■□□□□ 0.31
CLN3-241ENST00000635861 LIPGQ9Y5X9 500 aa16.99■□□□□ 0.31
CLN3-241ENST00000635861 TRGV5A0A0B4J1U4 118 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 IQANK1A0A1B0GTG1 560 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 FOXE1O00358 373 aaPredicted RBP16.98■□□□□ 0.31
CLN3-241ENST00000635861 SH3BGRLO75368 114 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 KLHL2O95198 593 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 GPR75O95800 540 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 C2P06681 752 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 FBXO45P0C2W1 286 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 NR0B1P51843 470 aaKnown RBP16.98■□□□□ 0.31
CLN3-241ENST00000635861 HNRNPH2P55795 449 aaKnown RBP16.98■□□□□ 0.31
CLN3-241ENST00000635861 C10orf62Q5T681 223 aaPredicted RBP16.98■□□□□ 0.31
CLN3-241ENST00000635861 CES4AQ5XG92 561 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 MRM1Q6IN84 353 aaKnown RBP16.98■□□□□ 0.31
CLN3-241ENST00000635861 LYPD8Q6UX82 237 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 RNF111Q6ZNA4 994 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 NUDT13Q86X67 352 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 MYLK4Q86YV6 388 aaPredicted RBP16.98■□□□□ 0.31
CLN3-241ENST00000635861 CCDC71Q8IV32 467 aaPredicted RBP16.98■□□□□ 0.31
CLN3-241ENST00000635861 OR4N5Q8IXE1 308 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 L3MBTL4Q8NA19 623 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 KCTD4Q8WVF5 259 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 PKNOX2Q96KN3 472 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 MTERF1Q99551 399 aaKnown RBP16.98■□□□□ 0.31
CLN3-241ENST00000635861 ZNF559Q9BR84 538 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 ZNF717Q9BY31 904 aaPredicted RBP16.98■□□□□ 0.31
CLN3-241ENST00000635861 UCK2Q9BZX2 261 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 ZNF703Q9H7S9 590 aaPredicted RBP16.98■□□□□ 0.31
CLN3-241ENST00000635861 ZFP64Q9NPA5 681 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 ACKR4Q9NPB9 350 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 TNFRSF10DQ9UBN6 386 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 B4GALT7Q9UBV7 327 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 FAM215AQ9Y5M1 114 aa16.98■□□□□ 0.31
CLN3-241ENST00000635861 A0A0A6YYD5 115 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 ATP6AP2A0A1C7CYW4 349 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 CAPN14A8MX76 684 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 OR10H2O60403 315 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 ATP6AP2O75787 350 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 GLI4P10075 376 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 NR2F6P10588 404 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 GMPRP36959 345 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 PEX19P40855 299 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 SLC37A1P57057 533 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 RPS13P62277 151 aaKnown RBP16.97■□□□□ 0.31
CLN3-241ENST00000635861 KCNJ2P63252 427 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 GTF2H2Q13888 395 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 PFKFB4Q16877 469 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 SLC25A35Q3KQZ1 300 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 C1orf185Q5T7R7 199 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 C18orf63Q68DL7 685 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 GTF2H2CQ6P1K8 395 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 ADGRD1Q6QNK2 874 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 CYP20A1Q6UW02 462 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 ZDHHC24Q6UX98 284 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 LRRC25Q8N386 305 aaPredicted RBP16.97■□□□□ 0.31
CLN3-241ENST00000635861 CEP112Q8N8E3 955 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 MNS1Q8NEH6 495 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 OR5M9Q8NGP3 310 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 OR10Q1Q8NGQ4 319 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 WDR20Q8TBZ3 569 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 RIT1Q92963 219 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 PPWD1Q96BP3 646 aaKnown RBP16.97■□□□□ 0.31
CLN3-241ENST00000635861 SORBS1Q9BX66 1292 aaKnown RBP16.97■□□□□ 0.31
CLN3-241ENST00000635861 SNX15Q9NRS6 342 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 TMCO1Q9UM00 188 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 ASB4Q9Y574 426 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 MAP1AP78559 2803 aaPredicted RBP16.97■□□□□ 0.31
CLN3-241ENST00000635861 ITPR3Q14573 2671 aa16.97■□□□□ 0.31
CLN3-241ENST00000635861 ANKRD33BA6NCL7 494 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 SEMA3DO95025 777 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 SLC35E2P0CK97 266 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 BSGP35613 385 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 PIGAP37287 484 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 SERPINB8P50452 374 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 HERVK_113P63132 956 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 ERVK-8P63133 956 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 EBPQ15125 230 aaKnown RBP16.96■□□□□ 0.31
CLN3-241ENST00000635861 NTRK2Q16620 822 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 RIPPLY2Q5TAB7 128 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 MROH9Q5TGP6 573 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 RTL6Q6ICC9 239 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 DGAT2L6Q6ZPD8 337 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 TAGAPQ8N103 731 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 SREK1Q8WXA9 508 aaKnown RBP16.96■□□□□ 0.31
CLN3-241ENST00000635861 TP53INP1Q96A56 240 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 CNPPD1Q9BV87 410 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 ERVK-6Q9BXR3 956 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 WWTR1Q9GZV5 400 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 EXO5Q9H790 373 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 IPPKQ9H8X2 491 aa16.96■□□□□ 0.31
CLN3-241ENST00000635861 ERVK-19Q9WJR5 959 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms