RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 INPP5JQ15735 1006 aaPredicted RBP19.27■□□□□ 0.67
CLN3-240ENST00000631023 SPRED3Q2MJR0 410 aa19.27■□□□□ 0.67
CLN3-240ENST00000631023 C6orf163Q5TEZ5 329 aa19.27■□□□□ 0.67
CLN3-240ENST00000631023 KLHL29Q96CT2 875 aa19.27■□□□□ 0.67
CLN3-240ENST00000631023 CCT7Q99832 543 aa19.27■□□□□ 0.67
CLN3-240ENST00000631023 TRIM4Q9C037 500 aa19.27■□□□□ 0.67
CLN3-240ENST00000631023 TUBB1Q9H4B7 451 aa19.27■□□□□ 0.67
CLN3-240ENST00000631023 MAP10Q9P2G4 905 aa19.27■□□□□ 0.67
CLN3-240ENST00000631023 ZDHHC2Q9UIJ5 367 aa19.27■□□□□ 0.67
CLN3-240ENST00000631023 ESPL1Q14674 2120 aa19.26■□□□□ 0.67
CLN3-240ENST00000631023 TMEM233B4DJY2 109 aa19.26■□□□□ 0.67
CLN3-240ENST00000631023 MAN1A2O60476 641 aa19.26■□□□□ 0.67
CLN3-240ENST00000631023 CSNK2A2P19784 350 aaPredicted RBP19.26■□□□□ 0.67
CLN3-240ENST00000631023 ABCE1P61221 599 aaKnown RBP19.26■□□□□ 0.67
CLN3-240ENST00000631023 TUBA3CQ13748 450 aa19.26■□□□□ 0.67
CLN3-240ENST00000631023 NR6A1Q15406 480 aa19.26■□□□□ 0.67
CLN3-240ENST00000631023 NOXRED1Q6NXP6 359 aa19.26■□□□□ 0.67
CLN3-240ENST00000631023 RPUSD3Q6P087 351 aaKnown RBP19.26■□□□□ 0.67
CLN3-240ENST00000631023 TUBA3EQ6PEY2 450 aa19.26■□□□□ 0.67
CLN3-240ENST00000631023 Q6ZSR9 355 aa19.26■□□□□ 0.67
CLN3-240ENST00000631023 SAMD14Q8IZD0 417 aaPredicted RBP19.26■□□□□ 0.67
CLN3-240ENST00000631023 CNPPD1Q9BV87 410 aa19.26■□□□□ 0.67
CLN3-240ENST00000631023 HEY2Q9UBP5 337 aa19.26■□□□□ 0.67
CLN3-240ENST00000631023 UTS2RQ9UKP6 389 aa19.26■□□□□ 0.67
CLN3-240ENST00000631023 YARS2Q9Y2Z4 477 aaKnown RBP19.26■□□□□ 0.67
CLN3-240ENST00000631023 POLR3HQ9Y535 204 aaPredicted RBP19.26■□□□□ 0.67
CLN3-240ENST00000631023 PTGDR2Q9Y5Y4 395 aa19.26■□□□□ 0.67
CLN3-240ENST00000631023 EML6Q6ZMW3 1958 aa19.25■□□□□ 0.67
CLN3-240ENST00000631023 PRAMEF2O60811 474 aa19.25■□□□□ 0.67
CLN3-240ENST00000631023 ITGA10O75578 1167 aa19.25■□□□□ 0.67
CLN3-240ENST00000631023 ARRB2P32121 409 aa19.25■□□□□ 0.67
CLN3-240ENST00000631023 CD96P40200 585 aa19.25■□□□□ 0.67
CLN3-240ENST00000631023 CYB561P49447 251 aa19.25■□□□□ 0.67
CLN3-240ENST00000631023 RNF4P78317 190 aa19.25■□□□□ 0.67
CLN3-240ENST00000631023 ZNF267Q14586 743 aaPredicted RBP19.25■□□□□ 0.67
CLN3-240ENST00000631023 DGAT2L6Q6ZPD8 337 aa19.25■□□□□ 0.67
CLN3-240ENST00000631023 KIRREL3Q8IZU9 778 aa19.25■□□□□ 0.67
CLN3-240ENST00000631023 MMP21Q8N119 569 aa19.25■□□□□ 0.67
CLN3-240ENST00000631023 CISD2Q8N5K1 135 aaKnown RBP19.25■□□□□ 0.67
CLN3-240ENST00000631023 TMEM156Q8N614 296 aa19.25■□□□□ 0.67
CLN3-240ENST00000631023 VIPAS39Q9H9C1 493 aa19.25■□□□□ 0.67
CLN3-240ENST00000631023 CXorf21Q9HAI6 301 aa19.25■□□□□ 0.67
CLN3-240ENST00000631023 GIMAP4Q9NUV9 329 aa19.25■□□□□ 0.67
CLN3-240ENST00000631023 EHD3Q9NZN3 535 aa19.25■□□□□ 0.67
CLN3-240ENST00000631023 LRFN1Q9P244 771 aa19.25■□□□□ 0.67
CLN3-240ENST00000631023 MYOTQ9UBF9 498 aa19.25■□□□□ 0.67
CLN3-240ENST00000631023 EPB41L3Q9Y2J2 1087 aaPredicted RBP19.25■□□□□ 0.67
CLN3-240ENST00000631023 TMED5Q9Y3A6 229 aa19.25■□□□□ 0.67
CLN3-240ENST00000631023 COPG1Q9Y678 874 aaKnown RBP19.25■□□□□ 0.67
CLN3-240ENST00000631023 IGKV3-11P04433 115 aa19.24■□□□□ 0.67
CLN3-240ENST00000631023 NT5EP21589 574 aa19.24■□□□□ 0.67
CLN3-240ENST00000631023 BGNP21810 368 aa19.24■□□□□ 0.67
CLN3-240ENST00000631023 TRHRP34981 398 aaPredicted RBP19.24■□□□□ 0.67
CLN3-240ENST00000631023 SLC1A6P48664 564 aa19.24■□□□□ 0.67
CLN3-240ENST00000631023 ERVK-8P63133 956 aa19.24■□□□□ 0.67
CLN3-240ENST00000631023 C2orf80Q0P641 193 aa19.24■□□□□ 0.67
CLN3-240ENST00000631023 STX3Q13277 289 aa19.24■□□□□ 0.67
CLN3-240ENST00000631023 KIAA0040Q15053 153 aa19.24■□□□□ 0.67
CLN3-240ENST00000631023 OR1C1Q15619 314 aa19.24■□□□□ 0.67
CLN3-240ENST00000631023 GALNT12Q8IXK2 581 aa19.24■□□□□ 0.67
CLN3-240ENST00000631023 GOLGA6L1Q8N7Z2 621 aa19.24■□□□□ 0.67
CLN3-240ENST00000631023 ZNF321PQ8N8H1 164 aa19.24■□□□□ 0.67
CLN3-240ENST00000631023 CDC26Q8NHZ8 85 aa19.24■□□□□ 0.67
CLN3-240ENST00000631023 ANKRD10Q9NXR5 420 aa19.24■□□□□ 0.67
CLN3-240ENST00000631023 ERVK-19Q9WJR5 959 aa19.24■□□□□ 0.67
CLN3-240ENST00000631023 PIP5K1BO14986 540 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 ITM2AO43736 263 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 PRKNO60260 465 aaPredicted RBP19.23■□□□□ 0.67
CLN3-240ENST00000631023 CD46P15529 392 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 FEN1P39748 380 aaKnown RBP19.23■□□□□ 0.67
CLN3-240ENST00000631023 HLCSP50747 726 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 SSR4P51571 173 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 ZNF766Q5HY98 468 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 RNF111Q6ZNA4 994 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 IKBIPQ70UQ0 350 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 ATCAYQ86WG3 371 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 OR2T11Q8NH01 316 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 MGARPQ8TDB4 240 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 SNRNP40Q96DI7 357 aaKnown RBP19.23■□□□□ 0.67
CLN3-240ENST00000631023 PPP3R2Q96LZ3 170 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 C5orf34Q96MH7 638 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 MYNNQ9NPC7 610 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 MIEF1Q9NQG6 463 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 AGPAT4Q9NRZ5 378 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 RAP2CQ9Y3L5 183 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 PCDHGB6Q9Y5F9 930 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 MYO18BQ8IUG5 2567 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 A0A1W2PS29 197 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 OR6C76A6NM76 312 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 LSM1O15116 133 aaKnown RBP19.23■□□□□ 0.67
CLN3-240ENST00000631023 LYPLA1O75608 230 aaPredicted RBP19.23■□□□□ 0.67
CLN3-240ENST00000631023 ATP1B1P05026 303 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 DDCP20711 480 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 WDR4P57081 412 aaKnown RBP19.23■□□□□ 0.67
CLN3-240ENST00000631023 FOXK1P85037 733 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 INAQ16352 499 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 ZNF750Q32MQ0 723 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 GALNTL6Q49A17 601 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 SPINK14Q6IE38 97 aa19.23■□□□□ 0.67
CLN3-240ENST00000631023 SLC29A4Q7RTT9 530 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms